RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 MYBBP1AQ9BQG0 1328 aaKnown RBP8.64□□□□□ -1.03
NUP88-206ENST00000573169 DOT1LQ8TEK3 1739 aa8.64□□□□□ -1.03
NUP88-206ENST00000573169 SHANK3Q9BYB0 1731 aa8.64□□□□□ -1.03
NUP88-206ENST00000573169 PPP1R37O75864 691 aa8.64□□□□□ -1.03
NUP88-206ENST00000573169 PLCG2P16885 1265 aa8.64□□□□□ -1.03
NUP88-206ENST00000573169 MS4A4AQ96JQ5 239 aa8.64□□□□□ -1.03
NUP88-206ENST00000573169 POLR3GLQ9BT43 218 aa8.64□□□□□ -1.03
NUP88-206ENST00000573169 MTFR1LQ9H019 292 aa8.64□□□□□ -1.03
NUP88-206ENST00000573169 OCEL1Q9H607 264 aa8.64□□□□□ -1.03
NUP88-206ENST00000573169 EMILIN1Q9Y6C2 1016 aa8.64□□□□□ -1.03
NUP88-206ENST00000573169 RTL1A6NKG5 1358 aa8.63□□□□□ -1.03
NUP88-206ENST00000573169 SEC24BO95487 1268 aa8.63□□□□□ -1.03
NUP88-206ENST00000573169 SLC39A7Q92504 469 aa8.63□□□□□ -1.03
NUP88-206ENST00000573169 SYT17Q9BSW7 474 aa8.63□□□□□ -1.03
NUP88-206ENST00000573169 KIF20BQ96Q89 1820 aa8.63□□□□□ -1.03
NUP88-206ENST00000573169 KAT6BQ8WYB5 2073 aa8.63□□□□□ -1.03
NUP88-206ENST00000573169 PNPLA7Q6ZV29 1317 aa8.62□□□□□ -1.03
NUP88-206ENST00000573169 TATP17735 454 aaPredicted RBP8.62□□□□□ -1.03
NUP88-206ENST00000573169 PDE4AP27815 886 aa8.62□□□□□ -1.03
NUP88-206ENST00000573169 CDCA8Q53HL2 280 aa8.62□□□□□ -1.03
NUP88-206ENST00000573169 SLC27A3Q5K4L6 730 aa8.62□□□□□ -1.03
NUP88-206ENST00000573169 RAPGEF4Q8WZA2 1011 aa8.62□□□□□ -1.03
NUP88-206ENST00000573169 ARXQ96QS3 562 aa8.62□□□□□ -1.03
NUP88-206ENST00000573169 SCUBE2Q9NQ36 999 aa8.62□□□□□ -1.03
NUP88-206ENST00000573169 FLT4P35916 1363 aa8.61□□□□□ -1.03
NUP88-206ENST00000573169 TFCP2L1Q9NZI6 479 aa8.61□□□□□ -1.03
NUP88-206ENST00000573169 CCNL1Q9UK58 526 aaPredicted RBP8.61□□□□□ -1.03
NUP88-206ENST00000573169 CYP27B1O15528 508 aa8.6□□□□□ -1.03
NUP88-206ENST00000573169 C7P10643 843 aa8.6□□□□□ -1.03
NUP88-206ENST00000573169 PRKCSHP14314 528 aaPredicted RBP8.6□□□□□ -1.03
NUP88-206ENST00000573169 TNNT2P45379 298 aaPredicted RBP8.6□□□□□ -1.03
NUP88-206ENST00000573169 IRX5P78411 483 aaPredicted RBP8.6□□□□□ -1.03
NUP88-206ENST00000573169 NBR1Q14596 966 aa8.6□□□□□ -1.03
NUP88-206ENST00000573169 MPRIPQ6WCQ1 1025 aa8.6□□□□□ -1.03
NUP88-206ENST00000573169 DDRGK1Q96HY6 314 aa8.6□□□□□ -1.03
NUP88-206ENST00000573169 RCAN3Q9UKA8 241 aa8.6□□□□□ -1.03
NUP88-206ENST00000573169 TUBGCP6Q96RT7 1819 aa8.59□□□□□ -1.03
NUP88-206ENST00000573169 SMIM5Q71RC9 77 aa8.59□□□□□ -1.03
NUP88-206ENST00000573169 COL23A1Q86Y22 540 aaPredicted RBP8.59□□□□□ -1.03
NUP88-206ENST00000573169 EYA1Q99502 592 aa8.59□□□□□ -1.03
NUP88-206ENST00000573169 POLKQ9UBT6 870 aa8.59□□□□□ -1.03
NUP88-206ENST00000573169 LY75O60449 1722 aa8.59□□□□□ -1.03
NUP88-206ENST00000573169 CGNL1Q0VF96 1302 aa8.58□□□□□ -1.04
NUP88-206ENST00000573169 PCDH11XQ9BZA7 1347 aa8.58□□□□□ -1.04
NUP88-206ENST00000573169 PCDH11YQ9BZA8 1340 aa8.58□□□□□ -1.04
NUP88-206ENST00000573169 MSL1Q68DK7 614 aa8.58□□□□□ -1.04
NUP88-206ENST00000573169 L3MBTL3Q96JM7 780 aaPredicted RBP8.58□□□□□ -1.04
NUP88-206ENST00000573169 KIF24Q5T7B8 1368 aa8.58□□□□□ -1.04
NUP88-206ENST00000573169 TOGARAM1Q9Y4F4 1720 aa8.57□□□□□ -1.04
NUP88-206ENST00000573169 PER1O15534 1290 aaPredicted RBP8.57□□□□□ -1.04
NUP88-206ENST00000573169 AMIGO3Q86WK7 504 aa8.57□□□□□ -1.04
NUP88-206ENST00000573169 SPNS2Q8IVW8 549 aa8.57□□□□□ -1.04
NUP88-206ENST00000573169 NLGN2Q8NFZ4 835 aa8.57□□□□□ -1.04
NUP88-206ENST00000573169 EXOC6Q8TAG9 804 aa8.57□□□□□ -1.04
NUP88-206ENST00000573169 SLC16A10Q8TF71 515 aa8.57□□□□□ -1.04
NUP88-206ENST00000573169 PIGBQ92521 554 aa8.57□□□□□ -1.04
NUP88-206ENST00000573169 PANK3Q9H999 370 aa8.57□□□□□ -1.04
NUP88-206ENST00000573169 PALLDQ8WX93 1383 aa8.57□□□□□ -1.04
NUP88-206ENST00000573169 NCAPD2Q15021 1401 aa8.56□□□□□ -1.04
NUP88-206ENST00000573169 POLD1P28340 1107 aa8.56□□□□□ -1.04
NUP88-206ENST00000573169 EIF4A2Q14240 407 aaKnown RBP8.56□□□□□ -1.04
NUP88-206ENST00000573169 GPR162Q16538 588 aa8.56□□□□□ -1.04
NUP88-206ENST00000573169 PDCD7Q8N8D1 485 aaKnown RBP8.56□□□□□ -1.04
NUP88-206ENST00000573169 BOLA1Q9Y3E2 137 aa8.56□□□□□ -1.04
NUP88-206ENST00000573169 QSER1Q2KHR3 1735 aa8.56□□□□□ -1.04
NUP88-206ENST00000573169 KDM2BQ8NHM5 1336 aa8.55□□□□□ -1.04
NUP88-206ENST00000573169 MAP2P11137 1827 aaKnown RBP8.55□□□□□ -1.04
NUP88-206ENST00000573169 ZNF784Q8NCA9 323 aaPredicted RBP8.55□□□□□ -1.04
NUP88-206ENST00000573169 SPG7Q9UQ90 795 aa8.55□□□□□ -1.04
NUP88-206ENST00000573169 MAP3K5Q99683 1374 aa8.55□□□□□ -1.04
NUP88-206ENST00000573169 COL24A1Q17RW2 1714 aa8.54□□□□□ -1.04
NUP88-206ENST00000573169 PKD1L3Q7Z443 1732 aa8.54□□□□□ -1.04
NUP88-206ENST00000573169 ANKRD26Q9UPS8 1709 aa8.54□□□□□ -1.04
NUP88-206ENST00000573169 ITGB4P16144 1822 aa8.54□□□□□ -1.04
NUP88-206ENST00000573169 C5P01031 1676 aa8.54□□□□□ -1.04
NUP88-206ENST00000573169 PHF14O94880 888 aa8.54□□□□□ -1.04
NUP88-206ENST00000573169 PHKG2P15735 406 aa8.54□□□□□ -1.04
NUP88-206ENST00000573169 DPY19L2Q6NUT2 758 aa8.54□□□□□ -1.04
NUP88-206ENST00000573169 MICALL2Q8IY33 904 aa8.54□□□□□ -1.04
NUP88-206ENST00000573169 ASAP1Q9ULH1 1129 aa8.54□□□□□ -1.04
NUP88-206ENST00000573169 NEFMP07197 916 aa8.53□□□□□ -1.04
NUP88-206ENST00000573169 ITPK1Q13572 414 aa8.53□□□□□ -1.04
NUP88-206ENST00000573169 LINC00116Q8NCU8 138 aa8.53□□□□□ -1.04
NUP88-206ENST00000573169 SMARCC1Q92922 1105 aaPredicted RBP8.53□□□□□ -1.04
NUP88-206ENST00000573169 LARP6Q9BRS8 491 aaKnown RBP8.53□□□□□ -1.04
NUP88-206ENST00000573169 TMOD3Q9NYL9 352 aa8.53□□□□□ -1.04
NUP88-206ENST00000573169 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.52□□□□□ -1.05
NUP88-206ENST00000573169 LOC102724428A0A0B4J2F2 783 aa8.52□□□□□ -1.05
NUP88-206ENST00000573169 YBX3P16989 372 aaKnown RBP eCLIP8.52□□□□□ -1.05
NUP88-206ENST00000573169 SIK1P57059 783 aa8.52□□□□□ -1.05
NUP88-206ENST00000573169 AEBP1Q8IUX7 1158 aa8.52□□□□□ -1.05
NUP88-206ENST00000573169 IFNL2Q8IZJ0 200 aa8.52□□□□□ -1.05
NUP88-206ENST00000573169 TMC2Q8TDI7 906 aa8.52□□□□□ -1.05
NUP88-206ENST00000573169 DDX27Q96GQ7 796 aaKnown RBP8.52□□□□□ -1.05
NUP88-206ENST00000573169 AK7Q96M32 723 aa8.52□□□□□ -1.05
NUP88-206ENST00000573169 ATG3Q9NT62 314 aa8.52□□□□□ -1.05
NUP88-206ENST00000573169 TAF1LQ8IZX4 1826 aa8.52□□□□□ -1.05
NUP88-206ENST00000573169 C4BP0C0L5 1744 aa8.51□□□□□ -1.05
NUP88-206ENST00000573169 CENPQQ7L2Z9 268 aaPredicted RBP8.51□□□□□ -1.05
NUP88-206ENST00000573169 MORC1Q86VD1 984 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms