RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 PRR7Q8TB68 274 aa13.53□□□□□ -0.24
CIITA-208ENST00000572665 C14orf93Q9H972 538 aaKnown RBP13.53□□□□□ -0.24
CIITA-208ENST00000572665 COG6Q9Y2V7 657 aa13.53□□□□□ -0.24
CIITA-208ENST00000572665 RAD21O60216 631 aa13.52□□□□□ -0.25
CIITA-208ENST00000572665 NR1I2O75469 434 aa13.52□□□□□ -0.25
CIITA-208ENST00000572665 RNF19BQ6ZMZ0 732 aa13.52□□□□□ -0.25
CIITA-208ENST00000572665 SCUBE3Q8IX30 993 aa13.52□□□□□ -0.25
CIITA-208ENST00000572665 FNBP4Q8N3X1 1017 aaPredicted RBP13.52□□□□□ -0.25
CIITA-208ENST00000572665 TSC1Q92574 1164 aa13.52□□□□□ -0.25
CIITA-208ENST00000572665 SALL2Q9Y467 1007 aaPredicted RBP13.52□□□□□ -0.25
CIITA-208ENST00000572665 PXDNQ92626 1479 aa13.52□□□□□ -0.25
CIITA-208ENST00000572665 NRXN1Q9ULB1 1477 aa13.51□□□□□ -0.25
CIITA-208ENST00000572665 RAB3GAP2Q9H2M9 1393 aa13.51□□□□□ -0.25
CIITA-208ENST00000572665 PSME1Q06323 249 aa13.51□□□□□ -0.25
CIITA-208ENST00000572665 RGS12O14924 1447 aa13.5□□□□□ -0.25
CIITA-208ENST00000572665 ATAD2Q6PL18 1390 aa13.5□□□□□ -0.25
CIITA-208ENST00000572665 BRICD5Q6PL45 260 aa13.5□□□□□ -0.25
CIITA-208ENST00000572665 APBB1O00213 710 aa13.49□□□□□ -0.25
CIITA-208ENST00000572665 NYAP1Q6ZVC0 841 aa13.49□□□□□ -0.25
CIITA-208ENST00000572665 THAP11Q96EK4 314 aa13.49□□□□□ -0.25
CIITA-208ENST00000572665 POGKQ9P215 609 aa13.49□□□□□ -0.25
CIITA-208ENST00000572665 DLC1Q96QB1 1528 aa13.49□□□□□ -0.25
CIITA-208ENST00000572665 EIF3AQ14152 1382 aaKnown RBP13.48□□□□□ -0.25
CIITA-208ENST00000572665 PLEKHH1Q9ULM0 1364 aa13.48□□□□□ -0.25
CIITA-208ENST00000572665 CFAP70Q5T0N1 1121 aa13.48□□□□□ -0.25
CIITA-208ENST00000572665 USB1Q9BQ65 265 aaKnown RBP13.48□□□□□ -0.25
CIITA-208ENST00000572665 RGPD8O14715 1765 aaPredicted RBP13.48□□□□□ -0.25
CIITA-208ENST00000572665 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.47□□□□□ -0.25
CIITA-208ENST00000572665 SPATA31A3Q5VYP0 1347 aa13.47□□□□□ -0.25
CIITA-208ENST00000572665 TRAK2O60296 914 aa13.47□□□□□ -0.25
CIITA-208ENST00000572665 FMNL1O95466 1100 aaPredicted RBP13.47□□□□□ -0.25
CIITA-208ENST00000572665 XPCQ01831 940 aaPredicted RBP13.47□□□□□ -0.25
CIITA-208ENST00000572665 DESI1Q6ICB0 168 aa13.47□□□□□ -0.25
CIITA-208ENST00000572665 KRT28Q7Z3Y7 464 aa13.47□□□□□ -0.25
CIITA-208ENST00000572665 GJD4Q96KN9 370 aaPredicted RBP13.47□□□□□ -0.25
CIITA-208ENST00000572665 HMX1Q9NP08 348 aaPredicted RBP13.47□□□□□ -0.25
CIITA-208ENST00000572665 ATRNO75882 1429 aa13.47□□□□□ -0.25
CIITA-208ENST00000572665 LRRN4Q8WUT4 740 aa13.46□□□□□ -0.25
CIITA-208ENST00000572665 PRAM1Q96QH2 718 aa13.46□□□□□ -0.25
CIITA-208ENST00000572665 COPS2P61201 443 aa13.45□□□□□ -0.26
CIITA-208ENST00000572665 GDPD2Q9HCC8 539 aa13.45□□□□□ -0.26
CIITA-208ENST00000572665 TNS3Q68CZ2 1445 aa13.45□□□□□ -0.26
CIITA-208ENST00000572665 ANKARQ7Z5J8 1434 aa13.45□□□□□ -0.26
CIITA-208ENST00000572665 SBNO1A3KN83 1393 aa13.45□□□□□ -0.26
CIITA-208ENST00000572665 ARHGEF10O15013 1369 aa13.45□□□□□ -0.26
CIITA-208ENST00000572665 PTPN5P54829 565 aa13.44□□□□□ -0.26
CIITA-208ENST00000572665 CCDC125Q86Z20 511 aa13.44□□□□□ -0.26
CIITA-208ENST00000572665 ADGRB2O60241 1585 aa13.44□□□□□ -0.26
CIITA-208ENST00000572665 BCL9LQ86UU0 1499 aa13.43□□□□□ -0.26
CIITA-208ENST00000572665 USP32Q8NFA0 1604 aa13.43□□□□□ -0.26
CIITA-208ENST00000572665 SAFB2Q14151 953 aaKnown RBP eCLIP13.43□□□□□ -0.26
CIITA-208ENST00000572665 UNC5CLQ8IV45 518 aa13.43□□□□□ -0.26
CIITA-208ENST00000572665 DCAF11Q8TEB1 546 aa13.43□□□□□ -0.26
CIITA-208ENST00000572665 TRIM34Q9BYJ4 488 aa13.43□□□□□ -0.26
CIITA-208ENST00000572665 PRM3Q9NNZ6 103 aa13.43□□□□□ -0.26
CIITA-208ENST00000572665 TBC1D2BQ9UPU7 963 aa13.43□□□□□ -0.26
CIITA-208ENST00000572665 PER1O15534 1290 aaPredicted RBP13.42□□□□□ -0.26
CIITA-208ENST00000572665 GPRASP1Q5JY77 1395 aa13.42□□□□□ -0.26
CIITA-208ENST00000572665 NWD2Q9ULI1 1742 aa13.42□□□□□ -0.26
CIITA-208ENST00000572665 TRAK1Q9UPV9 953 aa13.41□□□□□ -0.26
CIITA-208ENST00000572665 NDUFB9Q9Y6M9 179 aa13.41□□□□□ -0.26
CIITA-208ENST00000572665 ADGRB1O14514 1584 aa13.41□□□□□ -0.26
CIITA-208ENST00000572665 SLIT2O94813 1529 aa13.4□□□□□ -0.26
CIITA-208ENST00000572665 LYPD8Q6UX82 237 aa13.4□□□□□ -0.26
CIITA-208ENST00000572665 MTRQ99707 1265 aa13.4□□□□□ -0.26
CIITA-208ENST00000572665 C1orf115Q9H7X2 142 aa13.4□□□□□ -0.26
CIITA-208ENST00000572665 ITSN1Q15811 1721 aa13.39□□□□□ -0.27
CIITA-208ENST00000572665 ABL2P42684 1182 aa13.39□□□□□ -0.27
CIITA-208ENST00000572665 MSS51Q4VC12 460 aa13.39□□□□□ -0.27
CIITA-208ENST00000572665 SPSB2Q99619 263 aa13.39□□□□□ -0.27
CIITA-208ENST00000572665 TULP4Q9NRJ4 1543 aa13.39□□□□□ -0.27
CIITA-208ENST00000572665 ZPR1O75312 459 aa13.38□□□□□ -0.27
CIITA-208ENST00000572665 JUNDP17535 347 aa13.38□□□□□ -0.27
CIITA-208ENST00000572665 PMFBP1Q8TBY8 1022 aa13.38□□□□□ -0.27
CIITA-208ENST00000572665 PLCH1Q4KWH8 1693 aa13.37□□□□□ -0.27
CIITA-208ENST00000572665 ABCA3Q99758 1704 aa13.37□□□□□ -0.27
CIITA-208ENST00000572665 WASLO00401 505 aaPredicted RBP13.37□□□□□ -0.27
CIITA-208ENST00000572665 FAM160A2Q8N612 972 aaPredicted RBP13.37□□□□□ -0.27
CIITA-208ENST00000572665 EPS8L1Q8TE68 723 aa13.37□□□□□ -0.27
CIITA-208ENST00000572665 RALGAPBQ86X10 1494 aa13.36□□□□□ -0.27
CIITA-208ENST00000572665 TLL1O43897 1013 aa13.36□□□□□ -0.27
CIITA-208ENST00000572665 GPR37L1O60883 481 aa13.36□□□□□ -0.27
CIITA-208ENST00000572665 SF3B2Q13435 895 aaKnown RBP13.36□□□□□ -0.27
CIITA-208ENST00000572665 VPS72Q15906 364 aa13.36□□□□□ -0.27
CIITA-208ENST00000572665 TJAP1Q5JTD0 557 aa13.36□□□□□ -0.27
CIITA-208ENST00000572665 NGDNQ8NEJ9 315 aaKnown RBP13.36□□□□□ -0.27
CIITA-208ENST00000572665 HIRIP3Q9BW71 556 aaPredicted RBP13.36□□□□□ -0.27
CIITA-208ENST00000572665 CCDC9Q9Y3X0 531 aaKnown RBP13.36□□□□□ -0.27
CIITA-208ENST00000572665 ARHGEF28Q8N1W1 1705 aaKnown RBP13.36□□□□□ -0.27
CIITA-208ENST00000572665 KIAA1210Q9ULL0 1709 aa13.36□□□□□ -0.27
CIITA-208ENST00000572665 NR6A1Q15406 480 aa13.35□□□□□ -0.27
CIITA-208ENST00000572665 GLI3P10071 1580 aa13.35□□□□□ -0.27
CIITA-208ENST00000572665 TRPM3Q9HCF6 1732 aaPredicted RBP13.35□□□□□ -0.27
CIITA-208ENST00000572665 ADH1BP00325 375 aa13.34□□□□□ -0.27
CIITA-208ENST00000572665 PTPRNQ16849 979 aa13.34□□□□□ -0.27
CIITA-208ENST00000572665 IL21Q9HBE4 155 aa13.34□□□□□ -0.27
CIITA-208ENST00000572665 PCDH10Q9P2E7 1040 aa13.34□□□□□ -0.27
CIITA-208ENST00000572665 ZNF330Q9Y3S2 320 aaPredicted RBP13.34□□□□□ -0.27
CIITA-208ENST00000572665 ALS2Q96Q42 1657 aa13.34□□□□□ -0.27
CIITA-208ENST00000572665 COL14A1Q05707 1796 aaKnown RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms