RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 U2AF1Q01081 240 aaKnown RBP eCLIP24.3■■□□□ 1.48
CHD3-214ENST00000572579 KIF13BQ9NQT8 1826 aa24.29■■□□□ 1.48
CHD3-214ENST00000572579 CANXP27824 592 aaKnown RBP24.29■■□□□ 1.48
CHD3-214ENST00000572579 EIF5P55010 431 aaKnown RBP24.29■■□□□ 1.48
CHD3-214ENST00000572579 TEFQ10587 303 aa24.29■■□□□ 1.48
CHD3-214ENST00000572579 NFIXQ14938 502 aa24.29■■□□□ 1.48
CHD3-214ENST00000572579 BCS1LQ9Y276 419 aa24.29■■□□□ 1.48
CHD3-214ENST00000572579 ZPR1O75312 459 aa24.28■■□□□ 1.48
CHD3-214ENST00000572579 COL15A1P39059 1388 aa24.28■■□□□ 1.48
CHD3-214ENST00000572579 GIGYF1O75420 1035 aaPredicted RBP24.27■■□□□ 1.48
CHD3-214ENST00000572579 FCHSD2O94868 740 aa24.27■■□□□ 1.48
CHD3-214ENST00000572579 CHRNA5P30532 468 aa24.27■■□□□ 1.48
CHD3-214ENST00000572579 TTC5Q8N0Z6 440 aa24.27■■□□□ 1.48
CHD3-214ENST00000572579 NUDCQ9Y266 331 aa24.27■■□□□ 1.48
CHD3-214ENST00000572579 HEG1Q9ULI3 1381 aa24.27■■□□□ 1.48
CHD3-214ENST00000572579 MCM10Q7L590 875 aa24.26■■□□□ 1.47
CHD3-214ENST00000572579 N4BP2Q86UW6 1770 aaPredicted RBP24.25■■□□□ 1.47
CHD3-214ENST00000572579 DCTN1Q14203 1278 aa24.25■■□□□ 1.47
CHD3-214ENST00000572579 PRAMEF22A3QJZ6 481 aa24.24■■□□□ 1.47
CHD3-214ENST00000572579 STARD3NLO95772 234 aa24.24■■□□□ 1.47
CHD3-214ENST00000572579 A1BGP04217 495 aa24.24■■□□□ 1.47
CHD3-214ENST00000572579 ZNF526Q8TF50 670 aaPredicted RBP24.24■■□□□ 1.47
CHD3-214ENST00000572579 UBR2Q8IWV8 1755 aa24.24■■□□□ 1.47
CHD3-214ENST00000572579 BTBD11A6QL63 1104 aa24.23■■□□□ 1.47
CHD3-214ENST00000572579 VIRMAQ69YN4 1812 aaKnown RBP24.22■■□□□ 1.47
CHD3-214ENST00000572579 ARHGAP27Q6ZUM4 889 aa24.22■■□□□ 1.47
CHD3-214ENST00000572579 USP16Q9Y5T5 823 aa24.22■■□□□ 1.47
CHD3-214ENST00000572579 FMNL2Q96PY5 1086 aa24.21■■□□□ 1.47
CHD3-214ENST00000572579 PIM2Q9P1W9 311 aa24.21■■□□□ 1.47
CHD3-214ENST00000572579 SERPINB2P05120 415 aa24.2■■□□□ 1.46
CHD3-214ENST00000572579 GPBP1L1Q9HC44 474 aaPredicted RBP24.2■■□□□ 1.46
CHD3-214ENST00000572579 TBC1D2BQ9UPU7 963 aa24.2■■□□□ 1.46
CHD3-214ENST00000572579 SIPA1L3O60292 1781 aaPredicted RBP24.19■■□□□ 1.46
CHD3-214ENST00000572579 SENP3-EIF4A1A0A087X0R7 540 aa24.19■■□□□ 1.46
CHD3-214ENST00000572579 PLEKHF1Q96S99 279 aa24.19■■□□□ 1.46
CHD3-214ENST00000572579 TEX13AQ9BXU3 409 aaPredicted RBP24.19■■□□□ 1.46
CHD3-214ENST00000572579 PIP4K2AP48426 406 aaPredicted RBP24.18■■□□□ 1.46
CHD3-214ENST00000572579 TBC1D9BQ66K14 1250 aa24.18■■□□□ 1.46
CHD3-214ENST00000572579 BICDL1Q6ZP65 573 aa24.18■■□□□ 1.46
CHD3-214ENST00000572579 IL6STP40189 918 aaPredicted RBP24.17■■□□□ 1.46
CHD3-214ENST00000572579 DALRD3Q5D0E6 543 aaKnown RBP24.17■■□□□ 1.46
CHD3-214ENST00000572579 CEP350Q5VT06 3117 aa24.17■■□□□ 1.46
CHD3-214ENST00000572579 CARMIL3Q8ND23 1372 aa24.16■■□□□ 1.46
CHD3-214ENST00000572579 MIS18AQ9NYP9 233 aa24.16■■□□□ 1.46
CHD3-214ENST00000572579 A0A087WZG4 1122 aa24.15■■□□□ 1.46
CHD3-214ENST00000572579 KIF3CO14782 793 aa24.15■■□□□ 1.46
CHD3-214ENST00000572579 HTATSF1O43719 755 aaKnown RBP24.15■■□□□ 1.46
CHD3-214ENST00000572579 CAMTA2O94983 1202 aa24.15■■□□□ 1.46
CHD3-214ENST00000572579 BRCA1P38398 1863 aaKnown RBP24.14■■□□□ 1.45
CHD3-214ENST00000572579 RTF1Q92541 710 aaKnown RBP24.14■■□□□ 1.45
CHD3-214ENST00000572579 ZNF330Q9Y3S2 320 aaPredicted RBP24.14■■□□□ 1.45
CHD3-214ENST00000572579 NBPF26B4DH59 902 aa24.13■■□□□ 1.45
CHD3-214ENST00000572579 NBPF10Q6P3W6 841 aaKnown RBP24.13■■□□□ 1.45
CHD3-214ENST00000572579 CCDC24Q8N4L8 307 aa24.13■■□□□ 1.45
CHD3-214ENST00000572579 NBPF15Q8N660 670 aa24.13■■□□□ 1.45
CHD3-214ENST00000572579 C9orf131Q5VYM1 1079 aa24.12■■□□□ 1.45
CHD3-214ENST00000572579 SNRPA1P09661 255 aaKnown RBP24.11■■□□□ 1.45
CHD3-214ENST00000572579 PRELPP51888 382 aa24.11■■□□□ 1.45
CHD3-214ENST00000572579 TAF7Q15545 349 aaPredicted RBP24.11■■□□□ 1.45
CHD3-214ENST00000572579 THUMPD2Q9BTF0 503 aaKnown RBP24.11■■□□□ 1.45
CHD3-214ENST00000572579 NRXN2Q9P2S2 1712 aa24.1■■□□□ 1.45
CHD3-214ENST00000572579 PRR5LQ6MZQ0 368 aa24.09■■□□□ 1.45
CHD3-214ENST00000572579 C2CD5Q86YS7 1000 aa24.09■■□□□ 1.45
CHD3-214ENST00000572579 AFDNP55196 1824 aaKnown RBP24.08■■□□□ 1.45
CHD3-214ENST00000572579 NFE2L2Q16236 605 aa24.07■■□□□ 1.44
CHD3-214ENST00000572579 DZIP3Q86Y13 1208 aaKnown RBP24.07■■□□□ 1.44
CHD3-214ENST00000572579 NMRK2Q9NPI5 230 aa24.07■■□□□ 1.44
CHD3-214ENST00000572579 RASSF7Q02833 373 aa24.06■■□□□ 1.44
CHD3-214ENST00000572579 DDX10Q13206 875 aaKnown RBP24.06■■□□□ 1.44
CHD3-214ENST00000572579 BRIP1Q9BX63 1249 aa24.05■■□□□ 1.44
CHD3-214ENST00000572579 TTLL6Q8N841 843 aa24.04■■□□□ 1.44
CHD3-214ENST00000572579 H0YIN7 160 aa24.03■■□□□ 1.44
CHD3-214ENST00000572579 SETDB2Q96T68 719 aa24.03■■□□□ 1.44
CHD3-214ENST00000572579 RNF181Q9P0P0 153 aa24.03■■□□□ 1.44
CHD3-214ENST00000572579 ARFGEF1Q9Y6D6 1849 aa24.03■■□□□ 1.44
CHD3-214ENST00000572579 EIF4A1P60842 406 aaKnown RBP24.02■■□□□ 1.44
CHD3-214ENST00000572579 RALBP1Q15311 655 aa24.02■■□□□ 1.44
CHD3-214ENST00000572579 HLFQ16534 295 aa24.01■■□□□ 1.43
CHD3-214ENST00000572579 SCN7AQ01118 1682 aa24■■□□□ 1.43
CHD3-214ENST00000572579 NFKBIEO00221 500 aa24■■□□□ 1.43
CHD3-214ENST00000572579 CLEC4GQ6UXB4 293 aa24■■□□□ 1.43
CHD3-214ENST00000572579 ZNF622Q969S3 477 aaKnown RBP eCLIP23.99■■□□□ 1.432e-6■■■■□ 22.1
CHD3-214ENST00000572579 HSPA6P17066 643 aa23.98■■□□□ 1.43
CHD3-214ENST00000572579 PDE6BP35913 854 aa23.98■■□□□ 1.43
CHD3-214ENST00000572579 CNBD1Q8NA66 436 aa23.98■■□□□ 1.43
CHD3-214ENST00000572579 NPM2Q86SE8 214 aaKnown RBP23.97■■□□□ 1.43
CHD3-214ENST00000572579 ANKRD31Q8N7Z5 1873 aa23.97■■□□□ 1.43
CHD3-214ENST00000572579 PNISRQ8TF01 805 aaKnown RBP23.97■■□□□ 1.43
CHD3-214ENST00000572579 SRGNP10124 158 aa23.96■■□□□ 1.43
CHD3-214ENST00000572579 ZNF219Q9P2Y4 722 aaPredicted RBP23.96■■□□□ 1.43
CHD3-214ENST00000572579 C21orf2O43822 256 aa23.95■■□□□ 1.42
CHD3-214ENST00000572579 TOMM70O94826 608 aa23.95■■□□□ 1.42
CHD3-214ENST00000572579 NEFMP07197 916 aa23.95■■□□□ 1.42
CHD3-214ENST00000572579 NGEFQ8N5V2 710 aa23.95■■□□□ 1.42
CHD3-214ENST00000572579 LMNB1P20700 586 aa23.94■■□□□ 1.42
CHD3-214ENST00000572579 TMPOP42166 694 aaKnown RBP23.94■■□□□ 1.42
CHD3-214ENST00000572579 RIPK4P57078 832 aa23.94■■□□□ 1.42
CHD3-214ENST00000572579 TTLL7Q6ZT98 887 aa23.94■■□□□ 1.42
CHD3-214ENST00000572579 RRAGCQ9HB90 399 aa23.94■■□□□ 1.42
CHD3-214ENST00000572579 MAPK8IP3Q9UPT6 1336 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms