RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 SSH3Q8TE77 659 aa12.96□□□□□ -0.33
CCDC40-207ENST00000572253 KIF1BPQ96EK5 621 aa12.96□□□□□ -0.33
CCDC40-207ENST00000572253 SMC3Q9UQE7 1217 aa12.96□□□□□ -0.33
CCDC40-207ENST00000572253 DYNC1I1O14576 645 aa12.96□□□□□ -0.34
CCDC40-207ENST00000572253 GDPD2Q9HCC8 539 aa12.96□□□□□ -0.34
CCDC40-207ENST00000572253 RUFY2Q8WXA3 655 aa12.95□□□□□ -0.34
CCDC40-207ENST00000572253 RGPD1P0DJD0 1748 aa12.95□□□□□ -0.34
CCDC40-207ENST00000572253 OS9Q13438 667 aaPredicted RBP12.95□□□□□ -0.34
CCDC40-207ENST00000572253 UNC5CLQ8IV45 518 aa12.95□□□□□ -0.34
CCDC40-207ENST00000572253 USP44Q9H0E7 712 aa12.95□□□□□ -0.34
CCDC40-207ENST00000572253 RAD50Q92878 1312 aa12.95□□□□□ -0.34
CCDC40-207ENST00000572253 LIMCH1Q9UPQ0 1083 aa12.95□□□□□ -0.34
CCDC40-207ENST00000572253 PEAK1Q9H792 1746 aa12.94□□□□□ -0.34
CCDC40-207ENST00000572253 PXDNLA1KZ92 1463 aa12.94□□□□□ -0.34
CCDC40-207ENST00000572253 ZSCAN22P10073 491 aaPredicted RBP12.94□□□□□ -0.34
CCDC40-207ENST00000572253 PPP1R42Q7Z4L9 355 aa12.94□□□□□ -0.34
CCDC40-207ENST00000572253 RHPN1Q8TCX5 695 aa12.94□□□□□ -0.34
CCDC40-207ENST00000572253 MAP3K5Q99683 1374 aa12.94□□□□□ -0.34
CCDC40-207ENST00000572253 TMEM87AQ8NBN3 555 aa12.94□□□□□ -0.34
CCDC40-207ENST00000572253 EID1Q9Y6B2 187 aa12.94□□□□□ -0.34
CCDC40-207ENST00000572253 SGSM2O43147 1006 aa12.94□□□□□ -0.34
CCDC40-207ENST00000572253 GADD45BO75293 160 aaPredicted RBP12.94□□□□□ -0.34
CCDC40-207ENST00000572253 NLRP6P59044 892 aa12.94□□□□□ -0.34
CCDC40-207ENST00000572253 DIAPH3Q9NSV4 1193 aa12.94□□□□□ -0.34
CCDC40-207ENST00000572253 SRGAP3O43295 1099 aa12.93□□□□□ -0.34
CCDC40-207ENST00000572253 UBE2HP62256 183 aa12.93□□□□□ -0.34
CCDC40-207ENST00000572253 PLEKHG5O94827 1062 aa12.93□□□□□ -0.34
CCDC40-207ENST00000572253 MAP4K4O95819 1239 aaPredicted RBP12.93□□□□□ -0.34
CCDC40-207ENST00000572253 ZMYND15Q9H091 742 aa12.93□□□□□ -0.34
CCDC40-207ENST00000572253 STX6O43752 255 aa12.93□□□□□ -0.34
CCDC40-207ENST00000572253 GPATCH3Q96I76 525 aa12.93□□□□□ -0.34
CCDC40-207ENST00000572253 SNX14Q9Y5W7 946 aa12.92□□□□□ -0.34
CCDC40-207ENST00000572253 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.92□□□□□ -0.34
CCDC40-207ENST00000572253 NALCNQ8IZF0 1738 aa12.92□□□□□ -0.34
CCDC40-207ENST00000572253 ADAMTS13Q76LX8 1427 aa12.92□□□□□ -0.34
CCDC40-207ENST00000572253 PLEKHG1Q9ULL1 1385 aa12.92□□□□□ -0.34
CCDC40-207ENST00000572253 TPRNQ4KMQ1 711 aa12.92□□□□□ -0.34
CCDC40-207ENST00000572253 PKNOX2Q96KN3 472 aa12.91□□□□□ -0.34
CCDC40-207ENST00000572253 ZSCAN31Q96LW9 406 aaPredicted RBP12.91□□□□□ -0.34
CCDC40-207ENST00000572253 HDAC5Q9UQL6 1122 aa12.91□□□□□ -0.34
CCDC40-207ENST00000572253 CNPY2Q9Y2B0 182 aa12.91□□□□□ -0.34
CCDC40-207ENST00000572253 GLRX3O76003 335 aaKnown RBP12.91□□□□□ -0.34
CCDC40-207ENST00000572253 AK2P54819 239 aa12.91□□□□□ -0.34
CCDC40-207ENST00000572253 KLHL34Q8N239 644 aa12.91□□□□□ -0.34
CCDC40-207ENST00000572253 LTV1Q96GA3 475 aaPredicted RBP12.91□□□□□ -0.34
CCDC40-207ENST00000572253 USP25Q9UHP3 1055 aa12.91□□□□□ -0.34
CCDC40-207ENST00000572253 EIF2S2P20042 333 aaKnown RBP12.91□□□□□ -0.34
CCDC40-207ENST00000572253 POLA2Q14181 598 aa12.91□□□□□ -0.34
CCDC40-207ENST00000572253 TOPAZ1Q8N9V7 1692 aa12.91□□□□□ -0.34
CCDC40-207ENST00000572253 PTPRUQ92729 1446 aa12.91□□□□□ -0.34
CCDC40-207ENST00000572253 TSPOAP1O95153 1857 aa12.91□□□□□ -0.34
CCDC40-207ENST00000572253 FIBPO43427 364 aa12.9□□□□□ -0.34
CCDC40-207ENST00000572253 HMGN5P82970 282 aaKnown RBP12.9□□□□□ -0.34
CCDC40-207ENST00000572253 CWC27Q6UX04 472 aaKnown RBP12.9□□□□□ -0.34
CCDC40-207ENST00000572253 IL17REQ8NFR9 667 aa12.9□□□□□ -0.34
CCDC40-207ENST00000572253 SLC26A8Q96RN1 970 aa12.9□□□□□ -0.34
CCDC40-207ENST00000572253 F13A1P00488 732 aa12.9□□□□□ -0.34
CCDC40-207ENST00000572253 SYT1P21579 422 aa12.9□□□□□ -0.34
CCDC40-207ENST00000572253 CLASRPQ8N2M8 674 aaKnown RBP12.9□□□□□ -0.34
CCDC40-207ENST00000572253 PI4K2BQ8TCG2 481 aa12.9□□□□□ -0.34
CCDC40-207ENST00000572253 LSG1Q9H089 658 aaKnown RBP12.9□□□□□ -0.34
CCDC40-207ENST00000572253 SH2B1Q9NRF2 756 aaPredicted RBP12.9□□□□□ -0.34
CCDC40-207ENST00000572253 AMOTL2Q9Y2J4 779 aa12.9□□□□□ -0.34
CCDC40-207ENST00000572253 CEP170BQ9Y4F5 1589 aaPredicted RBP12.9□□□□□ -0.34
CCDC40-207ENST00000572253 TTC41PQ6P2S7 1318 aa12.9□□□□□ -0.35
CCDC40-207ENST00000572253 CASTP20810 708 aaKnown RBP12.89□□□□□ -0.35
CCDC40-207ENST00000572253 HOXC9P31274 260 aa12.89□□□□□ -0.35
CCDC40-207ENST00000572253 PLCB2Q00722 1185 aa12.89□□□□□ -0.35
CCDC40-207ENST00000572253 CACNA1FO60840 1977 aa12.89□□□□□ -0.35
CCDC40-207ENST00000572253 ADCY5O95622 1261 aa12.89□□□□□ -0.35
CCDC40-207ENST00000572253 DNAAF4Q8WXU2 420 aa12.89□□□□□ -0.35
CCDC40-207ENST00000572253 RPAP1Q9BWH6 1393 aaPredicted RBP12.89□□□□□ -0.35
CCDC40-207ENST00000572253 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.89□□□□□ -0.35
CCDC40-207ENST00000572253 ZKSCAN1P17029 563 aaPredicted RBP12.89□□□□□ -0.35
CCDC40-207ENST00000572253 TTC14Q96N46 770 aa12.89□□□□□ -0.35
CCDC40-207ENST00000572253 PHAXQ9H814 394 aaKnown RBP12.89□□□□□ -0.35
CCDC40-207ENST00000572253 FMN2Q9NZ56 1722 aa12.89□□□□□ -0.35
CCDC40-207ENST00000572253 DIP2BQ9P265 1576 aa12.89□□□□□ -0.35
CCDC40-207ENST00000572253 TPM3P06753 285 aa12.88□□□□□ -0.35
CCDC40-207ENST00000572253 HCLS1P14317 486 aaPredicted RBP12.88□□□□□ -0.35
CCDC40-207ENST00000572253 KCNJ4P48050 445 aa12.88□□□□□ -0.35
CCDC40-207ENST00000572253 PRIMPOLQ96LW4 560 aa12.88□□□□□ -0.35
CCDC40-207ENST00000572253 PDRG1Q9NUG6 133 aa12.88□□□□□ -0.35
CCDC40-207ENST00000572253 CYP46A1Q9Y6A2 500 aa12.88□□□□□ -0.35
CCDC40-207ENST00000572253 PDIA4P13667 645 aaKnown RBP12.88□□□□□ -0.35
CCDC40-207ENST00000572253 IL25Q9H293 177 aa12.88□□□□□ -0.35
CCDC40-207ENST00000572253 SPG7Q9UQ90 795 aa12.88□□□□□ -0.35
CCDC40-207ENST00000572253 RUFY3Q7L099 469 aa12.88□□□□□ -0.35
CCDC40-207ENST00000572253 ERC1Q8IUD2 1116 aa12.88□□□□□ -0.35
CCDC40-207ENST00000572253 PIBF1Q8WXW3 757 aa12.88□□□□□ -0.35
CCDC40-207ENST00000572253 RIMS1Q86UR5 1692 aaKnown RBP12.88□□□□□ -0.35
CCDC40-207ENST00000572253 FAM208AQ9UK61 1670 aaKnown RBP12.88□□□□□ -0.35
CCDC40-207ENST00000572253 GOLGA6L6A8MZA4 724 aa12.88□□□□□ -0.35
CCDC40-207ENST00000572253 HOXB7P09629 217 aa12.88□□□□□ -0.35
CCDC40-207ENST00000572253 JAKMIP1Q96N16 626 aaKnown RBP12.88□□□□□ -0.35
CCDC40-207ENST00000572253 XRN1Q8IZH2 1706 aaKnown RBP12.87□□□□□ -0.35
CCDC40-207ENST00000572253 IFIT2P09913 472 aaKnown RBP12.87□□□□□ -0.35
CCDC40-207ENST00000572253 LTKP29376 864 aa12.87□□□□□ -0.35
CCDC40-207ENST00000572253 C14orf37Q86TY3 774 aa12.87□□□□□ -0.35
CCDC40-207ENST00000572253 CCDC83Q8IWF9 413 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms