RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 NHSQ6T4R5 1651 aa8.52□□□□□ -1.05
VPS53-208ENST00000570650 CCDC7Q96M83 1385 aa8.51□□□□□ -1.05
VPS53-208ENST00000570650 HRO43593 1189 aa8.51□□□□□ -1.05
VPS53-208ENST00000570650 GRIN3BO60391 1043 aa8.51□□□□□ -1.05
VPS53-208ENST00000570650 SLC24A1O60721 1099 aa8.51□□□□□ -1.05
VPS53-208ENST00000570650 ARHGEF25Q86VW2 580 aa8.51□□□□□ -1.05
VPS53-208ENST00000570650 ACSBG1Q96GR2 724 aa8.51□□□□□ -1.05
VPS53-208ENST00000570650 SLC4A5Q9BY07 1137 aa8.51□□□□□ -1.05
VPS53-208ENST00000570650 HSPA6P17066 643 aa8.5□□□□□ -1.05
VPS53-208ENST00000570650 KCNH5Q8NCM2 988 aa8.5□□□□□ -1.05
VPS53-208ENST00000570650 NLGN2Q8NFZ4 835 aa8.5□□□□□ -1.05
VPS53-208ENST00000570650 ATP10DQ9P241 1426 aa8.49□□□□□ -1.05
VPS53-208ENST00000570650 GPBP1L1Q9HC44 474 aaPredicted RBP8.49□□□□□ -1.05
VPS53-208ENST00000570650 LRRC4BQ9NT99 713 aa8.49□□□□□ -1.05
VPS53-208ENST00000570650 TRPM1Q7Z4N2 1603 aa8.49□□□□□ -1.05
VPS53-208ENST00000570650 ABCC6O95255 1503 aa8.49□□□□□ -1.05
VPS53-208ENST00000570650 YBX3P16989 372 aaKnown RBP eCLIP8.48□□□□□ -1.05
VPS53-208ENST00000570650 SLC27A3Q5K4L6 730 aa8.48□□□□□ -1.05
VPS53-208ENST00000570650 CABP1Q9NZU7 370 aa8.48□□□□□ -1.05
VPS53-208ENST00000570650 PIK3C2AO00443 1686 aa8.48□□□□□ -1.05
VPS53-208ENST00000570650 CEP350Q5VT06 3117 aa8.48□□□□□ -1.05
VPS53-208ENST00000570650 COL24A1Q17RW2 1714 aa8.48□□□□□ -1.05
VPS53-208ENST00000570650 QSER1Q2KHR3 1735 aa8.48□□□□□ -1.05
VPS53-208ENST00000570650 PNPLA7Q6ZV29 1317 aa8.48□□□□□ -1.05
VPS53-208ENST00000570650 RGPD5Q99666 1765 aa8.48□□□□□ -1.05
VPS53-208ENST00000570650 BTAF1O14981 1849 aa8.47□□□□□ -1.05
VPS53-208ENST00000570650 RBM26Q5T8P6 1007 aaKnown RBP8.47□□□□□ -1.05
VPS53-208ENST00000570650 NPDC1Q9NQX5 325 aaPredicted RBP8.47□□□□□ -1.05
VPS53-208ENST00000570650 CENPJQ9HC77 1338 aaPredicted RBP8.47□□□□□ -1.05
VPS53-208ENST00000570650 KAT6BQ8WYB5 2073 aa8.46□□□□□ -1.05
VPS53-208ENST00000570650 BHMG1C9JSJ3 638 aaPredicted RBP8.46□□□□□ -1.06
VPS53-208ENST00000570650 IL2RBP14784 551 aa8.46□□□□□ -1.06
VPS53-208ENST00000570650 TFCP2L1Q9NZI6 479 aa8.46□□□□□ -1.06
VPS53-208ENST00000570650 QRICH2Q9H0J4 1663 aa8.46□□□□□ -1.06
VPS53-208ENST00000570650 KIAA1210Q9ULL0 1709 aa8.46□□□□□ -1.06
VPS53-208ENST00000570650 TRIM6-TRIM34B2RNG4 842 aa8.45□□□□□ -1.06
VPS53-208ENST00000570650 FAM198AQ9UFP1 575 aa8.45□□□□□ -1.06
VPS53-208ENST00000570650 TSKSQ9UJT2 592 aa8.45□□□□□ -1.06
VPS53-208ENST00000570650 TTC21BQ7Z4L5 1316 aa8.45□□□□□ -1.06
VPS53-208ENST00000570650 ADCY9O60503 1353 aa8.45□□□□□ -1.06
VPS53-208ENST00000570650 RAB3GAP2Q9H2M9 1393 aa8.45□□□□□ -1.06
VPS53-208ENST00000570650 NBPF1Q3BBV0 1214 aa8.44□□□□□ -1.06
VPS53-208ENST00000570650 ZNF526Q8TF50 670 aaPredicted RBP8.44□□□□□ -1.06
VPS53-208ENST00000570650 CDCA7LQ96GN5 454 aa8.44□□□□□ -1.06
VPS53-208ENST00000570650 NLRP2Q9NX02 1062 aa8.44□□□□□ -1.06
VPS53-208ENST00000570650 KIAA1468Q9P260 1216 aa8.44□□□□□ -1.06
VPS53-208ENST00000570650 RABGEF1Q9UJ41 708 aa8.44□□□□□ -1.06
VPS53-208ENST00000570650 TTC21AQ8NDW8 1320 aa8.44□□□□□ -1.06
VPS53-208ENST00000570650 NFAT5O94916 1531 aa8.44□□□□□ -1.06
VPS53-208ENST00000570650 PRSS12P56730 875 aa8.43□□□□□ -1.06
VPS53-208ENST00000570650 SMYD5Q6GMV2 418 aa8.43□□□□□ -1.06
VPS53-208ENST00000570650 RNF166Q96A37 237 aaPredicted RBP8.43□□□□□ -1.06
VPS53-208ENST00000570650 GOLGB1Q14789 3259 aaKnown RBP8.43□□□□□ -1.06
VPS53-208ENST00000570650 TUBGCP6Q96RT7 1819 aa8.43□□□□□ -1.06
VPS53-208ENST00000570650 C3orf80F5H4A9 247 aa8.42□□□□□ -1.06
VPS53-208ENST00000570650 KCNQ4P56696 695 aa8.42□□□□□ -1.06
VPS53-208ENST00000570650 PTGDRQ13258 359 aa8.42□□□□□ -1.06
VPS53-208ENST00000570650 CD2APQ9Y5K6 639 aa8.42□□□□□ -1.06
VPS53-208ENST00000570650 EVC2Q86UK5 1308 aa8.42□□□□□ -1.06
VPS53-208ENST00000570650 APLP1P51693 650 aa8.41□□□□□ -1.06
VPS53-208ENST00000570650 COL23A1Q86Y22 540 aaPredicted RBP8.41□□□□□ -1.06
VPS53-208ENST00000570650 SYTL4Q96C24 671 aaPredicted RBP8.41□□□□□ -1.06
VPS53-208ENST00000570650 SEPT9Q9UHD8 586 aaPredicted RBP8.41□□□□□ -1.06
VPS53-208ENST00000570650 ANKRD36BQ8N2N9 1353 aa8.4□□□□□ -1.06
VPS53-208ENST00000570650 MSL1Q68DK7 614 aa8.4□□□□□ -1.06
VPS53-208ENST00000570650 PADI6Q6TGC4 694 aa8.4□□□□□ -1.06
VPS53-208ENST00000570650 MRPL50Q8N5N7 158 aaKnown RBP8.4□□□□□ -1.06
VPS53-208ENST00000570650 TTC13Q8NBP0 860 aa8.4□□□□□ -1.06
VPS53-208ENST00000570650 DDX54Q8TDD1 881 aaKnown RBP8.4□□□□□ -1.06
VPS53-208ENST00000570650 ANKRD24Q8TF21 1146 aa8.4□□□□□ -1.06
VPS53-208ENST00000570650 NBPF3Q9H094 633 aa8.4□□□□□ -1.06
VPS53-208ENST00000570650 CCNL1Q9UK58 526 aaPredicted RBP8.4□□□□□ -1.06
VPS53-208ENST00000570650 USP31Q70CQ4 1352 aa8.39□□□□□ -1.07
VPS53-208ENST00000570650 KTN1Q86UP2 1357 aaKnown RBP8.39□□□□□ -1.07
VPS53-208ENST00000570650 GPR37O15354 613 aa8.39□□□□□ -1.07
VPS53-208ENST00000570650 RBM27Q9P2N5 1060 aaKnown RBP8.39□□□□□ -1.07
VPS53-208ENST00000570650 LY75O60449 1722 aa8.39□□□□□ -1.07
VPS53-208ENST00000570650 NSD2O96028 1365 aa8.38□□□□□ -1.07
VPS53-208ENST00000570650 SMAPO00193 183 aa8.38□□□□□ -1.07
VPS53-208ENST00000570650 PACS2Q86VP3 889 aa8.38□□□□□ -1.07
VPS53-208ENST00000570650 DNAJC5GQ8N7S2 189 aa8.38□□□□□ -1.07
VPS53-208ENST00000570650 USP47Q96K76 1375 aa8.37□□□□□ -1.07
VPS53-208ENST00000570650 IGSF1Q8N6C5 1336 aa8.37□□□□□ -1.07
VPS53-208ENST00000570650 TOMM70O94826 608 aa8.37□□□□□ -1.07
VPS53-208ENST00000570650 FCHSD2O94868 740 aa8.37□□□□□ -1.07
VPS53-208ENST00000570650 HMGB2P26583 209 aaKnown RBP8.37□□□□□ -1.07
VPS53-208ENST00000570650 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.37□□□□□ -1.07
VPS53-208ENST00000570650 FLAD1Q8NFF5 587 aa8.37□□□□□ -1.07
VPS53-208ENST00000570650 KCTD12Q96CX2 325 aaKnown RBP8.37□□□□□ -1.07
VPS53-208ENST00000570650 LTN1O94822 1766 aa8.37□□□□□ -1.07
VPS53-208ENST00000570650 USP54Q70EL1 1684 aa8.37□□□□□ -1.07
VPS53-208ENST00000570650 NME9Q86XW9 330 aa8.36□□□□□ -1.07
VPS53-208ENST00000570650 DOT1LQ8TEK3 1739 aa8.36□□□□□ -1.07
VPS53-208ENST00000570650 MON2Q7Z3U7 1717 aa8.35□□□□□ -1.07
VPS53-208ENST00000570650 COL13A1Q5TAT6 717 aaPredicted RBP8.35□□□□□ -1.07
VPS53-208ENST00000570650 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS53-208ENST00000570650 LAPTM4BQ86VI4 370 aa8.35□□□□□ -1.07
VPS53-208ENST00000570650 GPIHBP1Q8IV16 184 aa8.35□□□□□ -1.07
VPS53-208ENST00000570650 ZCRB1Q8TBF4 217 aaKnown RBP8.35□□□□□ -1.07
VPS53-208ENST00000570650 IP6K1Q92551 441 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms