RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 MMP10P09238 476 aa17.24■□□□□ 0.35
CNOT1-220ENST00000569916 SRP68Q9UHB9 627 aaKnown RBP17.24■□□□□ 0.35
CNOT1-220ENST00000569916 BCORQ6W2J9 1755 aa17.23■□□□□ 0.35
CNOT1-220ENST00000569916 WDR43Q15061 677 aaKnown RBP eCLIP17.23■□□□□ 0.35
CNOT1-220ENST00000569916 NLGN1Q8N2Q7 840 aa17.23■□□□□ 0.35
CNOT1-220ENST00000569916 THUMPD2Q9BTF0 503 aaKnown RBP17.23■□□□□ 0.35
CNOT1-220ENST00000569916 DCAF8L1A6NGE4 600 aa17.22■□□□□ 0.35
CNOT1-220ENST00000569916 STARD3NLO95772 234 aa17.22■□□□□ 0.35
CNOT1-220ENST00000569916 TAF7Q15545 349 aaPredicted RBP17.22■□□□□ 0.35
CNOT1-220ENST00000569916 CCDC146Q8IYE0 955 aa17.22■□□□□ 0.35
CNOT1-220ENST00000569916 TEX13AQ9BXU3 409 aaPredicted RBP17.22■□□□□ 0.35
CNOT1-220ENST00000569916 CD2APQ9Y5K6 639 aa17.22■□□□□ 0.35
CNOT1-220ENST00000569916 ADAMTS8Q9UP79 889 aa17.21■□□□□ 0.35
CNOT1-220ENST00000569916 CHD4Q14839 1912 aa17.21■□□□□ 0.35
CNOT1-220ENST00000569916 AFDNP55196 1824 aaKnown RBP17.21■□□□□ 0.35
CNOT1-220ENST00000569916 C10orf71Q711Q0 1435 aa17.21■□□□□ 0.34
CNOT1-220ENST00000569916 N4BP2Q86UW6 1770 aaPredicted RBP17.2■□□□□ 0.34
CNOT1-220ENST00000569916 PRAMEF22A3QJZ6 481 aa17.2■□□□□ 0.34
CNOT1-220ENST00000569916 CANXP27824 592 aaKnown RBP17.2■□□□□ 0.34
CNOT1-220ENST00000569916 TMPOP42166 694 aaKnown RBP17.2■□□□□ 0.34
CNOT1-220ENST00000569916 RIPK4P57078 832 aa17.2■□□□□ 0.34
CNOT1-220ENST00000569916 FKBP8Q14318 412 aa17.2■□□□□ 0.34
CNOT1-220ENST00000569916 NRXN2Q9P2S2 1712 aa17.2■□□□□ 0.34
CNOT1-220ENST00000569916 EIF5P55010 431 aaKnown RBP17.19■□□□□ 0.34
CNOT1-220ENST00000569916 USPL1Q5W0Q7 1092 aa17.19■□□□□ 0.34
CNOT1-220ENST00000569916 RUNDC1Q96C34 613 aa17.19■□□□□ 0.34
CNOT1-220ENST00000569916 MIS18AQ9NYP9 233 aa17.19■□□□□ 0.34
CNOT1-220ENST00000569916 NARFQ9UHQ1 456 aa17.19■□□□□ 0.34
CNOT1-220ENST00000569916 USP16Q9Y5T5 823 aa17.19■□□□□ 0.34
CNOT1-220ENST00000569916 BRCA1P38398 1863 aaKnown RBP17.18■□□□□ 0.34
CNOT1-220ENST00000569916 ZPR1O75312 459 aa17.18■□□□□ 0.34
CNOT1-220ENST00000569916 SNRPA1P09661 255 aaKnown RBP17.18■□□□□ 0.34
CNOT1-220ENST00000569916 PNISRQ8TF01 805 aaKnown RBP17.18■□□□□ 0.34
CNOT1-220ENST00000569916 RRP7AQ9Y3A4 280 aaKnown RBP17.18■□□□□ 0.34
CNOT1-220ENST00000569916 A1BGP04217 495 aa17.17■□□□□ 0.34
CNOT1-220ENST00000569916 DDR1Q08345 913 aa17.17■□□□□ 0.34
CNOT1-220ENST00000569916 LMOD3Q0VAK6 560 aa17.17■□□□□ 0.34
CNOT1-220ENST00000569916 BCL2L12Q9HB09 334 aa17.17■□□□□ 0.34
CNOT1-220ENST00000569916 PXDNLA1KZ92 1463 aa17.17■□□□□ 0.34
CNOT1-220ENST00000569916 IL6STP40189 918 aaPredicted RBP17.16■□□□□ 0.34
CNOT1-220ENST00000569916 CCDC184Q52MB2 194 aa17.16■□□□□ 0.34
CNOT1-220ENST00000569916 PARP3Q9Y6F1 533 aa17.16■□□□□ 0.34
CNOT1-220ENST00000569916 A0A087WZG4 1122 aa17.15■□□□□ 0.34
CNOT1-220ENST00000569916 TM4SF1P30408 202 aa17.15■□□□□ 0.34
CNOT1-220ENST00000569916 GPR162Q16538 588 aa17.15■□□□□ 0.34
CNOT1-220ENST00000569916 POLRMTO00411 1230 aaKnown RBP17.14■□□□□ 0.33
CNOT1-220ENST00000569916 YBX3P16989 372 aaKnown RBP eCLIP17.14■□□□□ 0.33
CNOT1-220ENST00000569916 PIP4K2AP48426 406 aaPredicted RBP17.14■□□□□ 0.33
CNOT1-220ENST00000569916 EIF4A1P60842 406 aaKnown RBP17.14■□□□□ 0.33
CNOT1-220ENST00000569916 NEUROD2Q15784 382 aa17.14■□□□□ 0.33
CNOT1-220ENST00000569916 PELP1Q8IZL8 1130 aaKnown RBP17.14■□□□□ 0.33
CNOT1-220ENST00000569916 TRIM35Q9UPQ4 493 aa17.14■□□□□ 0.33
CNOT1-220ENST00000569916 ZNF330Q9Y3S2 320 aaPredicted RBP17.14■□□□□ 0.33
CNOT1-220ENST00000569916 NFIXQ14938 502 aa17.13■□□□□ 0.33
CNOT1-220ENST00000569916 DLEC1Q9Y238 1755 aa17.12■□□□□ 0.33
CNOT1-220ENST00000569916 UTRNP46939 3433 aa17.12■□□□□ 0.33
CNOT1-220ENST00000569916 NBPF26B4DH59 902 aa17.12■□□□□ 0.33
CNOT1-220ENST00000569916 ANP32CO43423 234 aa17.12■□□□□ 0.33
CNOT1-220ENST00000569916 GIGYF1O75420 1035 aaPredicted RBP17.12■□□□□ 0.33
CNOT1-220ENST00000569916 NBPF10Q6P3W6 841 aaKnown RBP17.12■□□□□ 0.33
CNOT1-220ENST00000569916 NBPF15Q8N660 670 aa17.12■□□□□ 0.33
CNOT1-220ENST00000569916 TSPYL4Q9UJ04 414 aa17.12■□□□□ 0.33
CNOT1-220ENST00000569916 TBC1D2BQ9UPU7 963 aa17.12■□□□□ 0.33
CNOT1-220ENST00000569916 GOLGB1Q14789 3259 aaKnown RBP17.11■□□□□ 0.33
CNOT1-220ENST00000569916 YY1P25490 414 aa17.11■□□□□ 0.33
CNOT1-220ENST00000569916 BABAM1Q9NWV8 329 aa17.11■□□□□ 0.33
CNOT1-220ENST00000569916 ANKRD31Q8N7Z5 1873 aa17.11■□□□□ 0.33
CNOT1-220ENST00000569916 ARFGEF1Q9Y6D6 1849 aa17.1■□□□□ 0.33
CNOT1-220ENST00000569916 CAMTA2O94983 1202 aa17.1■□□□□ 0.33
CNOT1-220ENST00000569916 TGFB2P61812 414 aa17.1■□□□□ 0.33
CNOT1-220ENST00000569916 DZIP3Q86Y13 1208 aaKnown RBP17.1■□□□□ 0.33
CNOT1-220ENST00000569916 NPM2Q86SE8 214 aaKnown RBP17.09■□□□□ 0.33
CNOT1-220ENST00000569916 WWC3Q9ULE0 1092 aa17.09■□□□□ 0.33
CNOT1-220ENST00000569916 NUP98P52948 1817 aa17.08■□□□□ 0.33
CNOT1-220ENST00000569916 APAF1O14727 1248 aa17.08■□□□□ 0.32
CNOT1-220ENST00000569916 TBC1D9BQ66K14 1250 aa17.08■□□□□ 0.32
CNOT1-220ENST00000569916 COL11A2P13942 1736 aaPredicted RBP17.07■□□□□ 0.32
CNOT1-220ENST00000569916 CARMIL3Q8ND23 1372 aa17.07■□□□□ 0.32
CNOT1-220ENST00000569916 A0A0G2JLW4 131 aa17.07■□□□□ 0.32
CNOT1-220ENST00000569916 CHL1O00533 1208 aa17.07■□□□□ 0.32
CNOT1-220ENST00000569916 GRIN3BO60391 1043 aa17.07■□□□□ 0.32
CNOT1-220ENST00000569916 SERPINB2P05120 415 aa17.07■□□□□ 0.32
CNOT1-220ENST00000569916 BICDL1Q6ZP65 573 aa17.07■□□□□ 0.32
CNOT1-220ENST00000569916 MRS2Q9HD23 443 aa17.07■□□□□ 0.32
CNOT1-220ENST00000569916 DPEP1P16444 411 aa17.06■□□□□ 0.32
CNOT1-220ENST00000569916 KCNA3P22001 575 aa17.05■□□□□ 0.32
CNOT1-220ENST00000569916 ERBB4Q15303 1308 aa17.04■□□□□ 0.32
CNOT1-220ENST00000569916 LAS1LQ9Y4W2 734 aaKnown RBP17.04■□□□□ 0.32
CNOT1-220ENST00000569916 ANKRD36CQ5JPF3 1778 aa17.03■□□□□ 0.32
CNOT1-220ENST00000569916 RGL2O15211 777 aa17.03■□□□□ 0.32
CNOT1-220ENST00000569916 CHRNA5P30532 468 aa17.03■□□□□ 0.32
CNOT1-220ENST00000569916 KRT24Q2M2I5 525 aa17.03■□□□□ 0.32
CNOT1-220ENST00000569916 CLEC4GQ6UXB4 293 aa17.03■□□□□ 0.32
CNOT1-220ENST00000569916 CFAP44Q96MT7 982 aa17.03■□□□□ 0.32
CNOT1-220ENST00000569916 MYL6BP14649 208 aa17.02■□□□□ 0.32
CNOT1-220ENST00000569916 ZNF652Q9Y2D9 606 aa17.02■□□□□ 0.32
CNOT1-220ENST00000569916 CACNA1SQ13698 1873 aa17.01■□□□□ 0.31
CNOT1-220ENST00000569916 ZNF853P0CG23 659 aa17.01■□□□□ 0.31
CNOT1-220ENST00000569916 EIF2S2P20042 333 aaKnown RBP17.01■□□□□ 0.31
CNOT1-220ENST00000569916 PDIA6Q15084 440 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms