RNA–Protein interactions for RNA: ENST00000569784.1

SCAPER-223, Transcript of S-phase cyclin A associated protein in the ER, human

TSL 4

Gene SCAPER, Length 580 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCAPER-223	ENST00000569784	WWC3	Q9ULE0	1092 aa		11.55	□□□□□ -0.56
SCAPER-223	ENST00000569784	SENP3-EIF4A1	A0A087X0R7	540 aa		11.54	□□□□□ -0.56
SCAPER-223	ENST00000569784	PTCD1	O75127	700 aa	Known RBP	11.54	□□□□□ -0.56
SCAPER-223	ENST00000569784	CLCN6	P51797	869 aa		11.54	□□□□□ -0.56
SCAPER-223	ENST00000569784	CC2D1B	Q5T0F9	858 aa	Known RBP	11.54	□□□□□ -0.56
SCAPER-223	ENST00000569784	PLEKHG2	Q9H7P9	1386 aa		11.54	□□□□□ -0.56
SCAPER-223	ENST00000569784	ITPK1	Q13572	414 aa		11.53	□□□□□ -0.56
SCAPER-223	ENST00000569784	ZNF467	Q7Z7K2	595 aa	Predicted RBP	11.53	□□□□□ -0.56
SCAPER-223	ENST00000569784	YBX3	P16989	372 aa	Known RBP eCLIP	11.52	□□□□□ -0.57
SCAPER-223	ENST00000569784	AEBP1	Q8IUX7	1158 aa		11.52	□□□□□ -0.57
SCAPER-223	ENST00000569784	NLGN1	Q8N2Q7	840 aa		11.52	□□□□□ -0.57
SCAPER-223	ENST00000569784	PARP3	Q9Y6F1	533 aa		11.52	□□□□□ -0.57
SCAPER-223	ENST00000569784	DIAPH1	O60610	1272 aa	Known RBP	11.51	□□□□□ -0.57
SCAPER-223	ENST00000569784	MMP10	P09238	476 aa		11.51	□□□□□ -0.57
SCAPER-223	ENST00000569784	HMOX1	P09601	288 aa		11.51	□□□□□ -0.57
SCAPER-223	ENST00000569784	POTEI	P0CG38	1075 aa		11.51	□□□□□ -0.57
SCAPER-223	ENST00000569784	NFATC2IP	Q8NCF5	419 aa		11.51	□□□□□ -0.57
SCAPER-223	ENST00000569784	ZNF526	Q8TF50	670 aa	Predicted RBP	11.51	□□□□□ -0.57
SCAPER-223	ENST00000569784	CCDC87	Q9NVE4	849 aa		11.51	□□□□□ -0.57
SCAPER-223	ENST00000569784	KIF7	Q2M1P5	1343 aa		11.51	□□□□□ -0.57
SCAPER-223	ENST00000569784	U2SURP	O15042	1029 aa	Known RBP	11.5	□□□□□ -0.57
SCAPER-223	ENST00000569784	C1QTNF8	P60827	252 aa		11.5	□□□□□ -0.57
SCAPER-223	ENST00000569784	AKAP4	Q5JQC9	854 aa		11.5	□□□□□ -0.57
SCAPER-223	ENST00000569784	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.5	□□□□□ -0.57
SCAPER-223	ENST00000569784	RPS6KA4	O75676	772 aa		11.49	□□□□□ -0.57
SCAPER-223	ENST00000569784	IL13	P35225	146 aa		11.49	□□□□□ -0.57
SCAPER-223	ENST00000569784	RC3H1	Q5TC82	1133 aa	Known RBP	11.49	□□□□□ -0.57
SCAPER-223	ENST00000569784	AMIGO3	Q86WK7	504 aa		11.49	□□□□□ -0.57
SCAPER-223	ENST00000569784	ARHGEF1	Q92888	912 aa	Known RBP	11.49	□□□□□ -0.57
SCAPER-223	ENST00000569784	ZPR1	O75312	459 aa		11.48	□□□□□ -0.57
SCAPER-223	ENST00000569784	PSEN1	P49768	467 aa		11.48	□□□□□ -0.57
SCAPER-223	ENST00000569784	NPM2	Q86SE8	214 aa	Known RBP	11.48	□□□□□ -0.57
SCAPER-223	ENST00000569784	TTC5	Q8N0Z6	440 aa		11.48	□□□□□ -0.57
SCAPER-223	ENST00000569784	CFAP53	Q96M91	514 aa		11.48	□□□□□ -0.57
SCAPER-223	ENST00000569784	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.48	□□□□□ -0.57
SCAPER-223	ENST00000569784	BCS1L	Q9Y276	419 aa		11.48	□□□□□ -0.57
SCAPER-223	ENST00000569784	CNTNAP4	Q9C0A0	1308 aa		11.48	□□□□□ -0.57
SCAPER-223	ENST00000569784	KDM6A	O15550	1401 aa	Predicted RBP	11.48	□□□□□ -0.57
SCAPER-223	ENST00000569784	SCN11A	Q9UI33	1791 aa		11.48	□□□□□ -0.57
SCAPER-223	ENST00000569784	VIRMA	Q69YN4	1812 aa	Known RBP	11.47	□□□□□ -0.57
SCAPER-223	ENST00000569784	COL5A3	P25940	1745 aa	Predicted RBP	11.47	□□□□□ -0.57
SCAPER-223	ENST00000569784	ZNF831	Q5JPB2	1677 aa		11.47	□□□□□ -0.57
SCAPER-223	ENST00000569784	CIC	Q96RK0	1608 aa	Predicted RBP	11.47	□□□□□ -0.57
SCAPER-223	ENST00000569784	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.47	□□□□□ -0.57
SCAPER-223	ENST00000569784	CRKL	P46109	303 aa	Known RBP	11.47	□□□□□ -0.57
SCAPER-223	ENST00000569784	ZFP91	Q96JP5	570 aa	Predicted RBP	11.47	□□□□□ -0.57
SCAPER-223	ENST00000569784	KDR	P35968	1356 aa		11.46	□□□□□ -0.57
SCAPER-223	ENST00000569784	TGFB2	P61812	414 aa		11.46	□□□□□ -0.57
SCAPER-223	ENST00000569784	ARHGAP27	Q6ZUM4	889 aa		11.46	□□□□□ -0.57
SCAPER-223	ENST00000569784	SLC52A2	Q9HAB3	445 aa		11.46	□□□□□ -0.57
SCAPER-223	ENST00000569784	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.46	□□□□□ -0.58
SCAPER-223	ENST00000569784	ATP10D	Q9P241	1426 aa		11.45	□□□□□ -0.58
SCAPER-223	ENST00000569784		A0A0G2JLW4	131 aa		11.45	□□□□□ -0.58
SCAPER-223	ENST00000569784	RNMT	O43148	476 aa	Known RBP	11.45	□□□□□ -0.58
SCAPER-223	ENST00000569784	FCHSD2	O94868	740 aa		11.45	□□□□□ -0.58
SCAPER-223	ENST00000569784	TEF	Q10587	303 aa		11.45	□□□□□ -0.58
SCAPER-223	ENST00000569784	PDAP1	Q13442	181 aa	Known RBP	11.45	□□□□□ -0.58
SCAPER-223	ENST00000569784	C4A	P0C0L4	1744 aa		11.44	□□□□□ -0.58
SCAPER-223	ENST00000569784	TTLL13P	A6NNM8	815 aa		11.44	□□□□□ -0.58
SCAPER-223	ENST00000569784	NPHP1	O15259	732 aa		11.44	□□□□□ -0.58
SCAPER-223	ENST00000569784	GYS1	P13807	737 aa		11.44	□□□□□ -0.58
SCAPER-223	ENST00000569784	TIE1	P35590	1138 aa		11.44	□□□□□ -0.58
SCAPER-223	ENST00000569784	SLC39A6	Q13433	755 aa		11.44	□□□□□ -0.58
SCAPER-223	ENST00000569784	SLC4A9	Q96Q91	983 aa		11.44	□□□□□ -0.58
SCAPER-223	ENST00000569784	LGR6	Q9HBX8	967 aa		11.44	□□□□□ -0.58
SCAPER-223	ENST00000569784	NUDC	Q9Y266	331 aa		11.44	□□□□□ -0.58
SCAPER-223	ENST00000569784	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.44	□□□□□ -0.58
SCAPER-223	ENST00000569784	ATMIN	O43313	823 aa	Predicted RBP	11.43	□□□□□ -0.58
SCAPER-223	ENST00000569784	NEFM	P07197	916 aa		11.43	□□□□□ -0.58
SCAPER-223	ENST00000569784	ATN1	P54259	1190 aa	Predicted RBP	11.43	□□□□□ -0.58
SCAPER-223	ENST00000569784	MTHFSD	Q2M296	383 aa	Known RBP	11.43	□□□□□ -0.58
SCAPER-223	ENST00000569784	DNAJC10	Q8IXB1	793 aa		11.43	□□□□□ -0.58
SCAPER-223	ENST00000569784	GAS2L2	Q8NHY3	880 aa		11.43	□□□□□ -0.58
SCAPER-223	ENST00000569784	TMEM106C	Q9BVX2	250 aa		11.43	□□□□□ -0.58
SCAPER-223	ENST00000569784	SRP68	Q9UHB9	627 aa	Known RBP	11.43	□□□□□ -0.58
SCAPER-223	ENST00000569784	DPEP1	P16444	411 aa		11.42	□□□□□ -0.58
SCAPER-223	ENST00000569784	CANX	P27824	592 aa	Known RBP	11.42	□□□□□ -0.58
SCAPER-223	ENST00000569784	USPL1	Q5W0Q7	1092 aa		11.42	□□□□□ -0.58
SCAPER-223	ENST00000569784	ASTL	Q6HA08	431 aa	Predicted RBP	11.42	□□□□□ -0.58
SCAPER-223	ENST00000569784	PIM2	Q9P1W9	311 aa		11.42	□□□□□ -0.58
SCAPER-223	ENST00000569784	TJP1	Q07157	1748 aa		11.42	□□□□□ -0.58
SCAPER-223	ENST00000569784	USP42	Q9H9J4	1324 aa	Known RBP	11.41	□□□□□ -0.58
SCAPER-223	ENST00000569784	GNAT3	A8MTJ3	354 aa		11.41	□□□□□ -0.58
SCAPER-223	ENST00000569784	STARD3NL	O95772	234 aa		11.41	□□□□□ -0.58
SCAPER-223	ENST00000569784	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.41	□□□□□ -0.58
SCAPER-223	ENST00000569784	RTF1	Q92541	710 aa	Known RBP	11.41	□□□□□ -0.58
SCAPER-223	ENST00000569784	MYH14	Q7Z406	1995 aa	Known RBP	11.41	□□□□□ -0.58
SCAPER-223	ENST00000569784	KIF13B	Q9NQT8	1826 aa		11.4	□□□□□ -0.58
SCAPER-223	ENST00000569784	PXDNL	A1KZ92	1463 aa		11.4	□□□□□ -0.58
SCAPER-223	ENST00000569784	PER1	O15534	1290 aa	Predicted RBP	11.4	□□□□□ -0.58
SCAPER-223	ENST00000569784	DALRD3	Q5D0E6	543 aa	Known RBP	11.4	□□□□□ -0.58
SCAPER-223	ENST00000569784	DCBLD2	Q96PD2	775 aa		11.4	□□□□□ -0.58
SCAPER-223	ENST00000569784		A0A087WZG4	1122 aa		11.39	□□□□□ -0.59
SCAPER-223	ENST00000569784	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.39	□□□□□ -0.59
SCAPER-223	ENST00000569784	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.39	□□□□□ -0.59
SCAPER-223	ENST00000569784	INTS5	Q6P9B9	1019 aa	Known RBP	11.39	□□□□□ -0.59
SCAPER-223	ENST00000569784	BICDL1	Q6ZP65	573 aa		11.39	□□□□□ -0.59
SCAPER-223	ENST00000569784	C10orf71	Q711Q0	1435 aa		11.39	□□□□□ -0.59
SCAPER-223	ENST00000569784	VSIG10	Q8N0Z9	540 aa		11.39	□□□□□ -0.59
SCAPER-223	ENST00000569784	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms