RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 TEX13AQ9BXU3 409 aaPredicted RBP12.93□□□□□ -0.34
CLN6-209ENST00000569336 RPS6KA4O75676 772 aa12.92□□□□□ -0.34
CLN6-209ENST00000569336 STARD3NLO95772 234 aa12.92□□□□□ -0.34
CLN6-209ENST00000569336 TRAPPC3LQ5T215 181 aa12.92□□□□□ -0.34
CLN6-209ENST00000569336 PNISRQ8TF01 805 aaKnown RBP12.92□□□□□ -0.34
CLN6-209ENST00000569336 ARXQ96QS3 562 aa12.92□□□□□ -0.34
CLN6-209ENST00000569336 CCDC87Q9NVE4 849 aa12.92□□□□□ -0.34
CLN6-209ENST00000569336 UTRNP46939 3433 aa12.91□□□□□ -0.34
CLN6-209ENST00000569336 RFC4P35249 363 aa12.91□□□□□ -0.34
CLN6-209ENST00000569336 TMPOP42166 694 aaKnown RBP12.91□□□□□ -0.34
CLN6-209ENST00000569336 DCTN1Q14203 1278 aa12.91□□□□□ -0.34
CLN6-209ENST00000569336 TAF7Q15545 349 aaPredicted RBP12.91□□□□□ -0.34
CLN6-209ENST00000569336 DNAJC10Q8IXB1 793 aa12.91□□□□□ -0.34
CLN6-209ENST00000569336 ZNF496Q96IT1 587 aaPredicted RBP12.91□□□□□ -0.34
CLN6-209ENST00000569336 ADAMTS8Q9UP79 889 aa12.91□□□□□ -0.34
CLN6-209ENST00000569336 COL15A1P39059 1388 aa12.91□□□□□ -0.34
CLN6-209ENST00000569336 CYP19A1P11511 503 aaPredicted RBP12.9□□□□□ -0.34
CLN6-209ENST00000569336 RIPK4P57078 832 aa12.9□□□□□ -0.34
CLN6-209ENST00000569336 AMIGO3Q86WK7 504 aa12.9□□□□□ -0.34
CLN6-209ENST00000569336 CCDC146Q8IYE0 955 aa12.9□□□□□ -0.34
CLN6-209ENST00000569336 MSL1Q68DK7 614 aa12.89□□□□□ -0.35
CLN6-209ENST00000569336 MRS2Q9HD23 443 aa12.89□□□□□ -0.35
CLN6-209ENST00000569336 ARFGEF2Q9Y6D5 1785 aa12.89□□□□□ -0.35
CLN6-209ENST00000569336 ANKRD31Q8N7Z5 1873 aa12.89□□□□□ -0.35
CLN6-209ENST00000569336 SOS1Q07889 1333 aaPredicted RBP12.88□□□□□ -0.35
CLN6-209ENST00000569336 INTS5Q6P9B9 1019 aaKnown RBP12.88□□□□□ -0.35
CLN6-209ENST00000569336 NPM2Q86SE8 214 aaKnown RBP12.88□□□□□ -0.35
CLN6-209ENST00000569336 FHDC1Q9C0D6 1143 aaPredicted RBP12.88□□□□□ -0.35
CLN6-209ENST00000569336 USP42Q9H9J4 1324 aaKnown RBP12.88□□□□□ -0.35
CLN6-209ENST00000569336 SNRPA1P09661 255 aaKnown RBP12.87□□□□□ -0.35
CLN6-209ENST00000569336 NLGN1Q8N2Q7 840 aa12.87□□□□□ -0.35
CLN6-209ENST00000569336 ARHGEF1Q92888 912 aaKnown RBP12.87□□□□□ -0.35
CLN6-209ENST00000569336 BABAM1Q9NWV8 329 aa12.87□□□□□ -0.35
CLN6-209ENST00000569336 ZBTB1Q9Y2K1 713 aa12.87□□□□□ -0.35
CLN6-209ENST00000569336 ZPR1O75312 459 aa12.86□□□□□ -0.35
CLN6-209ENST00000569336 NEUROD2Q15784 382 aa12.86□□□□□ -0.35
CLN6-209ENST00000569336 KLHL34Q8N239 644 aa12.86□□□□□ -0.35
CLN6-209ENST00000569336 RRP7AQ9Y3A4 280 aaKnown RBP12.86□□□□□ -0.35
CLN6-209ENST00000569336 CCDC88AQ3V6T2 1871 aa12.86□□□□□ -0.35
CLN6-209ENST00000569336 A0A087WZG4 1122 aa12.85□□□□□ -0.35
CLN6-209ENST00000569336 IL6STP40189 918 aaPredicted RBP12.85□□□□□ -0.35
CLN6-209ENST00000569336 CALD1Q05682 793 aaKnown RBP12.85□□□□□ -0.35
CLN6-209ENST00000569336 SMIM5Q71RC9 77 aa12.85□□□□□ -0.35
CLN6-209ENST00000569336 SYT17Q9BSW7 474 aa12.85□□□□□ -0.35
CLN6-209ENST00000569336 THUMPD2Q9BTF0 503 aaKnown RBP12.85□□□□□ -0.35
CLN6-209ENST00000569336 TSPYL4Q9UJ04 414 aa12.85□□□□□ -0.35
CLN6-209ENST00000569336 KCNQ3O43525 872 aa12.84□□□□□ -0.35
CLN6-209ENST00000569336 GYS1P13807 737 aa12.84□□□□□ -0.35
CLN6-209ENST00000569336 CANXP27824 592 aaKnown RBP12.84□□□□□ -0.35
CLN6-209ENST00000569336 NARFQ9UHQ1 456 aa12.84□□□□□ -0.35
CLN6-209ENST00000569336 C10orf71Q711Q0 1435 aa12.84□□□□□ -0.35
CLN6-209ENST00000569336 COL11A2P13942 1736 aaPredicted RBP12.84□□□□□ -0.35
CLN6-209ENST00000569336 MMP10P09238 476 aa12.83□□□□□ -0.36
CLN6-209ENST00000569336 EIF5P55010 431 aaKnown RBP12.83□□□□□ -0.36
CLN6-209ENST00000569336 GPR162Q16538 588 aa12.83□□□□□ -0.36
CLN6-209ENST00000569336 CD2APQ9Y5K6 639 aa12.83□□□□□ -0.36
CLN6-209ENST00000569336 APAF1O14727 1248 aa12.82□□□□□ -0.36
CLN6-209ENST00000569336 EIF4A1P60842 406 aaKnown RBP12.82□□□□□ -0.36
CLN6-209ENST00000569336 CCDC184Q52MB2 194 aa12.82□□□□□ -0.36
CLN6-209ENST00000569336 MIS18AQ9NYP9 233 aa12.82□□□□□ -0.36
CLN6-209ENST00000569336 TRIM35Q9UPQ4 493 aa12.82□□□□□ -0.36
CLN6-209ENST00000569336 ZNF330Q9Y3S2 320 aaPredicted RBP12.82□□□□□ -0.36
CLN6-209ENST00000569336 PARP3Q9Y6F1 533 aa12.82□□□□□ -0.36
CLN6-209ENST00000569336 SBF1O95248 1867 aa12.82□□□□□ -0.36
CLN6-209ENST00000569336 MYH3P11055 1940 aa12.82□□□□□ -0.36
CLN6-209ENST00000569336 LAMB2P55268 1798 aa12.81□□□□□ -0.36
CLN6-209ENST00000569336 USPL1Q5W0Q7 1092 aa12.81□□□□□ -0.36
CLN6-209ENST00000569336 PELP1Q8IZL8 1130 aaKnown RBP12.81□□□□□ -0.36
CLN6-209ENST00000569336 SRP68Q9UHB9 627 aaKnown RBP12.81□□□□□ -0.36
CLN6-209ENST00000569336 ERBB4Q15303 1308 aa12.81□□□□□ -0.36
CLN6-209ENST00000569336 A1BGP04217 495 aa12.8□□□□□ -0.36
CLN6-209ENST00000569336 USP16Q9Y5T5 823 aa12.8□□□□□ -0.36
CLN6-209ENST00000569336 DICER1Q9UPY3 1922 aaKnown RBP12.8□□□□□ -0.36
CLN6-209ENST00000569336 PRAMEF22A3QJZ6 481 aa12.79□□□□□ -0.36
CLN6-209ENST00000569336 GNAI1P63096 354 aa12.79□□□□□ -0.36
CLN6-209ENST00000569336 FKBP8Q14318 412 aa12.79□□□□□ -0.36
CLN6-209ENST00000569336 NCBP3Q53F19 620 aaKnown RBP12.79□□□□□ -0.36
CLN6-209ENST00000569336 CFAP44Q96MT7 982 aa12.79□□□□□ -0.36
CLN6-209ENST00000569336 ZNF652Q9Y2D9 606 aa12.79□□□□□ -0.36
CLN6-209ENST00000569336 LAS1LQ9Y4W2 734 aaKnown RBP12.79□□□□□ -0.36
CLN6-209ENST00000569336 CARMIL3Q8ND23 1372 aa12.79□□□□□ -0.36
CLN6-209ENST00000569336 PXDNLA1KZ92 1463 aa12.78□□□□□ -0.36
CLN6-209ENST00000569336 CHL1O00533 1208 aa12.78□□□□□ -0.36
CLN6-209ENST00000569336 RGL2O15211 777 aa12.78□□□□□ -0.36
CLN6-209ENST00000569336 CCDC27Q2M243 656 aa12.78□□□□□ -0.36
CLN6-209ENST00000569336 DZIP3Q86Y13 1208 aaKnown RBP12.78□□□□□ -0.36
CLN6-209ENST00000569336 IFT57Q9NWB7 429 aa12.78□□□□□ -0.36
CLN6-209ENST00000569336 HOXB7P09629 217 aa12.77□□□□□ -0.37
CLN6-209ENST00000569336 NGEFQ8N5V2 710 aa12.77□□□□□ -0.37
CLN6-209ENST00000569336 NLGN2Q8NFZ4 835 aa12.77□□□□□ -0.37
CLN6-209ENST00000569336 FER1L6Q2WGJ9 1857 aa12.76□□□□□ -0.37
CLN6-209ENST00000569336 POLRMTO00411 1230 aaKnown RBP12.76□□□□□ -0.37
CLN6-209ENST00000569336 CLEC4GQ6UXB4 293 aa12.76□□□□□ -0.37
CLN6-209ENST00000569336 TBC1D2BQ9UPU7 963 aa12.76□□□□□ -0.37
CLN6-209ENST00000569336 NBPF26B4DH59 902 aa12.75□□□□□ -0.37
CLN6-209ENST00000569336 CAPN15O75808 1086 aa12.75□□□□□ -0.37
CLN6-209ENST00000569336 CAMTA2O94983 1202 aa12.75□□□□□ -0.37
CLN6-209ENST00000569336 TM4SF1P30408 202 aa12.75□□□□□ -0.37
CLN6-209ENST00000569336 PIP4K2AP48426 406 aaPredicted RBP12.75□□□□□ -0.37
CLN6-209ENST00000569336 TGFB2P61812 414 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms