RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 KCNQ3O43525 872 aa27.53■■■□□ 2
CLN3-219ENST00000565778 TGFB2P61812 414 aa27.53■■■□□ 2
CLN3-219ENST00000565778 PNNQ9H307 717 aaKnown RBP27.52■■■□□ 2
CLN3-219ENST00000565778 NARFQ9UHQ1 456 aa27.52■■■□□ 2
CLN3-219ENST00000565778 CICQ96RK0 1608 aaPredicted RBP27.52■■■□□ 2
CLN3-219ENST00000565778 A0A0G2JLW4 131 aa27.51■■□□□ 1.99
CLN3-219ENST00000565778 TM4SF1P30408 202 aa27.5■■□□□ 1.99
CLN3-219ENST00000565778 COL15A1P39059 1388 aa27.49■■□□□ 1.99
CLN3-219ENST00000565778 CHD4Q14839 1912 aa27.49■■□□□ 1.99
CLN3-219ENST00000565778 GOLGB1Q14789 3259 aaKnown RBP27.49■■□□□ 1.99
CLN3-219ENST00000565778 DDR1Q08345 913 aa27.48■■□□□ 1.99
CLN3-219ENST00000565778 PLEKHF1Q96S99 279 aa27.48■■□□□ 1.99
CLN3-219ENST00000565778 ZNF330Q9Y3S2 320 aaPredicted RBP27.48■■□□□ 1.99
CLN3-219ENST00000565778 C4AP0C0L4 1744 aa27.47■■□□□ 1.99
CLN3-219ENST00000565778 A0A087WZG4 1122 aa27.47■■□□□ 1.99
CLN3-219ENST00000565778 EIF5P55010 431 aaKnown RBP27.47■■□□□ 1.99
CLN3-219ENST00000565778 TAF7Q15545 349 aaPredicted RBP27.47■■□□□ 1.99
CLN3-219ENST00000565778 NPM2Q86SE8 214 aaKnown RBP27.47■■□□□ 1.99
CLN3-219ENST00000565778 A1BGP04217 495 aa27.46■■□□□ 1.99
CLN3-219ENST00000565778 UBR2Q8IWV8 1755 aa27.45■■□□□ 1.99
CLN3-219ENST00000565778 POLRMTO00411 1230 aaKnown RBP27.45■■□□□ 1.98
CLN3-219ENST00000565778 DPEP1P16444 411 aa27.45■■□□□ 1.98
CLN3-219ENST00000565778 MAPK8IP3Q9UPT6 1336 aa27.44■■□□□ 1.98
CLN3-219ENST00000565778 C10orf71Q711Q0 1435 aa27.44■■□□□ 1.98
CLN3-219ENST00000565778 NFE2L2Q16236 605 aa27.44■■□□□ 1.98
CLN3-219ENST00000565778 BCS1LQ9Y276 419 aa27.44■■□□□ 1.98
CLN3-219ENST00000565778 USP16Q9Y5T5 823 aa27.44■■□□□ 1.98
CLN3-219ENST00000565778 NFIXQ14938 502 aa27.43■■□□□ 1.98
CLN3-219ENST00000565778 BCL2L12Q9HB09 334 aa27.43■■□□□ 1.98
CLN3-219ENST00000565778 MIS18AQ9NYP9 233 aa27.43■■□□□ 1.98
CLN3-219ENST00000565778 PXDNLA1KZ92 1463 aa27.43■■□□□ 1.98
CLN3-219ENST00000565778 SIPA1L3O60292 1781 aaPredicted RBP27.43■■□□□ 1.98
CLN3-219ENST00000565778 SNRPA1P09661 255 aaKnown RBP27.42■■□□□ 1.98
CLN3-219ENST00000565778 IL6STP40189 918 aaPredicted RBP27.42■■□□□ 1.98
CLN3-219ENST00000565778 TBC1D2BQ9UPU7 963 aa27.42■■□□□ 1.98
CLN3-219ENST00000565778 MYBBP1AQ9BQG0 1328 aaKnown RBP27.41■■□□□ 1.98
CLN3-219ENST00000565778 PRAMEF22A3QJZ6 481 aa27.4■■□□□ 1.98
CLN3-219ENST00000565778 BICDL1Q6ZP65 573 aa27.4■■□□□ 1.98
CLN3-219ENST00000565778 SERPINB2P05120 415 aa27.39■■□□□ 1.98
CLN3-219ENST00000565778 PNISRQ8TF01 805 aaKnown RBP27.39■■□□□ 1.98
CLN3-219ENST00000565778 KCNA3P22001 575 aa27.38■■□□□ 1.97
CLN3-219ENST00000565778 PIM2Q9P1W9 311 aa27.38■■□□□ 1.97
CLN3-219ENST00000565778 ZEB1P37275 1124 aaPredicted RBP27.37■■□□□ 1.97
CLN3-219ENST00000565778 PIP4K2AP48426 406 aaPredicted RBP27.36■■□□□ 1.97
CLN3-219ENST00000565778 THUMPD2Q9BTF0 503 aaKnown RBP27.36■■□□□ 1.97
CLN3-219ENST00000565778 KIF13BQ9NQT8 1826 aa27.36■■□□□ 1.97
CLN3-219ENST00000565778 CHRNA5P30532 468 aa27.35■■□□□ 1.97
CLN3-219ENST00000565778 RIPK4P57078 832 aa27.35■■□□□ 1.97
CLN3-219ENST00000565778 ARHGAP27Q6ZUM4 889 aa27.35■■□□□ 1.97
CLN3-219ENST00000565778 N4BP2Q86UW6 1770 aaPredicted RBP27.35■■□□□ 1.97
CLN3-219ENST00000565778 TBC1D9BQ66K14 1250 aa27.34■■□□□ 1.97
CLN3-219ENST00000565778 DZIP3Q86Y13 1208 aaKnown RBP27.34■■□□□ 1.97
CLN3-219ENST00000565778 WDR43Q15061 677 aaKnown RBP eCLIP27.32■■□□□ 1.96
CLN3-219ENST00000565778 DALRD3Q5D0E6 543 aaKnown RBP27.32■■□□□ 1.96
CLN3-219ENST00000565778 CAMTA2O94983 1202 aa27.3■■□□□ 1.96
CLN3-219ENST00000565778 TMPOP42166 694 aaKnown RBP27.3■■□□□ 1.96
CLN3-219ENST00000565778 SETDB2Q96T68 719 aa27.3■■□□□ 1.96
CLN3-219ENST00000565778 PRKRIP1Q9H875 184 aaPredicted RBP27.3■■□□□ 1.96
CLN3-219ENST00000565778 CCDC146Q8IYE0 955 aa27.29■■□□□ 1.96
CLN3-219ENST00000565778 KIAA1551Q9HCM1 1747 aa27.29■■□□□ 1.96
CLN3-219ENST00000565778 NBPF26B4DH59 902 aa27.28■■□□□ 1.96
CLN3-219ENST00000565778 EIF4A1P60842 406 aaKnown RBP27.28■■□□□ 1.96
CLN3-219ENST00000565778 NEUROD2Q15784 382 aa27.28■■□□□ 1.96
CLN3-219ENST00000565778 NBPF10Q6P3W6 841 aaKnown RBP27.28■■□□□ 1.96
CLN3-219ENST00000565778 NBPF15Q8N660 670 aa27.28■■□□□ 1.96
CLN3-219ENST00000565778 GIGYF1O75420 1035 aaPredicted RBP27.27■■□□□ 1.96
CLN3-219ENST00000565778 DLG5Q8TDM6 1919 aa27.26■■□□□ 1.95
CLN3-219ENST00000565778 H0YIN7 160 aa27.26■■□□□ 1.95
CLN3-219ENST00000565778 NPHP1O15259 732 aa27.26■■□□□ 1.95
CLN3-219ENST00000565778 LMOD3Q0VAK6 560 aa27.26■■□□□ 1.95
CLN3-219ENST00000565778 C2CD5Q86YS7 1000 aa27.26■■□□□ 1.95
CLN3-219ENST00000565778 ZNF526Q8TF50 670 aaPredicted RBP27.26■■□□□ 1.95
CLN3-219ENST00000565778 ADAMTS8Q9UP79 889 aa27.26■■□□□ 1.95
CLN3-219ENST00000565778 RRP7AQ9Y3A4 280 aaKnown RBP27.26■■□□□ 1.95
CLN3-219ENST00000565778 ATP10DQ9P241 1426 aa27.25■■□□□ 1.95
CLN3-219ENST00000565778 CLEC4GQ6UXB4 293 aa27.25■■□□□ 1.95
CLN3-219ENST00000565778 RUNDC1Q96C34 613 aa27.25■■□□□ 1.95
CLN3-219ENST00000565778 TSPYL4Q9UJ04 414 aa27.25■■□□□ 1.95
CLN3-219ENST00000565778 CCDC24Q8N4L8 307 aa27.24■■□□□ 1.95
CLN3-219ENST00000565778 NGEFQ8N5V2 710 aa27.24■■□□□ 1.95
CLN3-219ENST00000565778 GPBP1L1Q9HC44 474 aaPredicted RBP27.24■■□□□ 1.95
CLN3-219ENST00000565778 ZNF652Q9Y2D9 606 aa27.24■■□□□ 1.95
CLN3-219ENST00000565778 CARMIL3Q8ND23 1372 aa27.23■■□□□ 1.95
CLN3-219ENST00000565778 C1QTNF8P60827 252 aa27.23■■□□□ 1.95
CLN3-219ENST00000565778 PDE6BP35913 854 aa27.22■■□□□ 1.95
CLN3-219ENST00000565778 PRR5LQ6MZQ0 368 aa27.22■■□□□ 1.95
CLN3-219ENST00000565778 BRIP1Q9BX63 1249 aa27.22■■□□□ 1.95
CLN3-219ENST00000565778 AFDNP55196 1824 aaKnown RBP27.21■■□□□ 1.95
CLN3-219ENST00000565778 TTLL6Q8N841 843 aa27.21■■□□□ 1.95
CLN3-219ENST00000565778 ADCY9O60503 1353 aa27.21■■□□□ 1.95
CLN3-219ENST00000565778 CNBD1Q8NA66 436 aa27.2■■□□□ 1.94
CLN3-219ENST00000565778 MYL6BP14649 208 aa27.19■■□□□ 1.94
CLN3-219ENST00000565778 ZNF622Q969S3 477 aaKnown RBP eCLIP27.19■■□□□ 1.94
CLN3-219ENST00000565778 BABAM1Q9NWV8 329 aa27.19■■□□□ 1.94
CLN3-219ENST00000565778 PDZRN3Q9UPQ7 1066 aa27.19■■□□□ 1.94
CLN3-219ENST00000565778 NRXN2Q9P2S2 1712 aa27.19■■□□□ 1.94
CLN3-219ENST00000565778 ST5P78524 1137 aa27.18■■□□□ 1.94
CLN3-219ENST00000565778 NBPF5PQ86XG9 351 aaPredicted RBP27.18■■□□□ 1.94
CLN3-219ENST00000565778 C9orf131Q5VYM1 1079 aa27.17■■□□□ 1.94
CLN3-219ENST00000565778 NIP7Q9Y221 180 aaKnown RBP eCLIP27.17■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms