RNA–Protein interactions for RNA: ENST00000565393.2

TCF4-228, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 314 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-228ENST00000565393 ITGB4P16144 1822 aa8.53□□□□□ -1.04
TCF4-228ENST00000565393 POLRMTO00411 1230 aaKnown RBP8.53□□□□□ -1.04
TCF4-228ENST00000565393 NPHP1O15259 732 aa8.53□□□□□ -1.04
TCF4-228ENST00000565393 KCNQ3O43525 872 aa8.53□□□□□ -1.04
TCF4-228ENST00000565393 KCNA3P22001 575 aa8.53□□□□□ -1.04
TCF4-228ENST00000565393 DCTN1Q14203 1278 aa8.53□□□□□ -1.04
TCF4-228ENST00000565393 NFIXQ14938 502 aa8.53□□□□□ -1.04
TCF4-228ENST00000565393 QSER1Q2KHR3 1735 aa8.53□□□□□ -1.04
TCF4-228ENST00000565393 PNNQ9H307 717 aaKnown RBP8.52□□□□□ -1.05
TCF4-228ENST00000565393 BCL2L12Q9HB09 334 aa8.52□□□□□ -1.05
TCF4-228ENST00000565393 MIS18AQ9NYP9 233 aa8.52□□□□□ -1.05
TCF4-228ENST00000565393 USP16Q9Y5T5 823 aa8.52□□□□□ -1.05
TCF4-228ENST00000565393 H0YIN7 160 aa8.51□□□□□ -1.05
TCF4-228ENST00000565393 HTATSF1O43719 755 aaKnown RBP8.51□□□□□ -1.05
TCF4-228ENST00000565393 SNRPA1P09661 255 aaKnown RBP8.51□□□□□ -1.05
TCF4-228ENST00000565393 EIF5P55010 431 aaKnown RBP8.51□□□□□ -1.05
TCF4-228ENST00000565393 TAF7Q15545 349 aaPredicted RBP8.51□□□□□ -1.05
TCF4-228ENST00000565393 C9orf131Q5VYM1 1079 aa8.51□□□□□ -1.05
TCF4-228ENST00000565393 SETDB2Q96T68 719 aa8.51□□□□□ -1.05
TCF4-228ENST00000565393 ATP10DQ9P241 1426 aa8.51□□□□□ -1.05
TCF4-228ENST00000565393 COL15A1P39059 1388 aa8.5□□□□□ -1.05
TCF4-228ENST00000565393 HEG1Q9ULI3 1381 aa8.5□□□□□ -1.05
TCF4-228ENST00000565393 TUBGCP6Q96RT7 1819 aa8.5□□□□□ -1.05
TCF4-228ENST00000565393 IL6STP40189 918 aaPredicted RBP8.5□□□□□ -1.05
TCF4-228ENST00000565393 PIP4K2AP48426 406 aaPredicted RBP8.5□□□□□ -1.05
TCF4-228ENST00000565393 DDX10Q13206 875 aaKnown RBP8.5□□□□□ -1.05
TCF4-228ENST00000565393 TBC1D9BQ66K14 1250 aa8.5□□□□□ -1.05
TCF4-228ENST00000565393 DZIP3Q86Y13 1208 aaKnown RBP8.5□□□□□ -1.05
TCF4-228ENST00000565393 C2CD5Q86YS7 1000 aa8.5□□□□□ -1.05
TCF4-228ENST00000565393 CCDC24Q8N4L8 307 aa8.5□□□□□ -1.05
TCF4-228ENST00000565393 ZNF622Q969S3 477 aaKnown RBP eCLIP8.5□□□□□ -1.053e-6■■■■□ 24.2
TCF4-228ENST00000565393 PXDNLA1KZ92 1463 aa8.5□□□□□ -1.05
TCF4-228ENST00000565393 PRAMEF22A3QJZ6 481 aa8.49□□□□□ -1.05
TCF4-228ENST00000565393 PDE6BP35913 854 aa8.49□□□□□ -1.05
TCF4-228ENST00000565393 NGEFQ8N5V2 710 aa8.49□□□□□ -1.05
TCF4-228ENST00000565393 TTLL6Q8N841 843 aa8.49□□□□□ -1.05
TCF4-228ENST00000565393 RNF181Q9P0P0 153 aa8.49□□□□□ -1.05
TCF4-228ENST00000565393 ZNF219Q9P2Y4 722 aaPredicted RBP8.49□□□□□ -1.05
TCF4-228ENST00000565393 CICQ96RK0 1608 aaPredicted RBP8.49□□□□□ -1.05
TCF4-228ENST00000565393 TAF1LQ8IZX4 1826 aa8.49□□□□□ -1.05
TCF4-228ENST00000565393 COL24A1Q17RW2 1714 aa8.49□□□□□ -1.05
TCF4-228ENST00000565393 C10orf71Q711Q0 1435 aa8.48□□□□□ -1.05
TCF4-228ENST00000565393 C16orf71Q8IYS4 520 aaPredicted RBP8.48□□□□□ -1.05
TCF4-228ENST00000565393 PNISRQ8TF01 805 aaKnown RBP8.48□□□□□ -1.05
TCF4-228ENST00000565393 BRIP1Q9BX63 1249 aa8.48□□□□□ -1.05
TCF4-228ENST00000565393 COL3A1P02461 1466 aaPredicted RBP8.48□□□□□ -1.05
TCF4-228ENST00000565393 MAPK8IP3Q9UPT6 1336 aa8.48□□□□□ -1.05
TCF4-228ENST00000565393 CEMIPQ8WUJ3 1361 aa8.48□□□□□ -1.05
TCF4-228ENST00000565393 UBR3Q6ZT12 1888 aa8.47□□□□□ -1.05
TCF4-228ENST00000565393 FAM177BA6PVY3 158 aa8.47□□□□□ -1.05
TCF4-228ENST00000565393 GTF2E1P29083 439 aaPredicted RBP8.47□□□□□ -1.05
TCF4-228ENST00000565393 RALBP1Q15311 655 aa8.47□□□□□ -1.05
TCF4-228ENST00000565393 PLEKHF1Q96S99 279 aa8.47□□□□□ -1.05
TCF4-228ENST00000565393 RRAGCQ9HB90 399 aa8.47□□□□□ -1.05
TCF4-228ENST00000565393 RRP7AQ9Y3A4 280 aaKnown RBP8.47□□□□□ -1.05
TCF4-228ENST00000565393 KCPQ6ZWJ8 1503 aa8.46□□□□□ -1.05
TCF4-228ENST00000565393 KIF3CO14782 793 aa8.46□□□□□ -1.06
TCF4-228ENST00000565393 C21orf2O43822 256 aa8.46□□□□□ -1.06
TCF4-228ENST00000565393 CAMTA2O94983 1202 aa8.46□□□□□ -1.06
TCF4-228ENST00000565393 RIPK4P57078 832 aa8.46□□□□□ -1.06
TCF4-228ENST00000565393 ST5P78524 1137 aa8.46□□□□□ -1.06
TCF4-228ENST00000565393 NFE2L2Q16236 605 aa8.46□□□□□ -1.06
TCF4-228ENST00000565393 PRR5LQ6MZQ0 368 aa8.46□□□□□ -1.06
TCF4-228ENST00000565393 TPTE2Q6XPS3 522 aa8.46□□□□□ -1.06
TCF4-228ENST00000565393 NBPF5PQ86XG9 351 aaPredicted RBP8.46□□□□□ -1.06
TCF4-228ENST00000565393 CNBD1Q8NA66 436 aa8.46□□□□□ -1.06
TCF4-228ENST00000565393 THUMPD2Q9BTF0 503 aaKnown RBP8.46□□□□□ -1.06
TCF4-228ENST00000565393 NMRK2Q9NPI5 230 aa8.46□□□□□ -1.06
TCF4-228ENST00000565393 ZNF652Q9Y2D9 606 aa8.46□□□□□ -1.06
TCF4-228ENST00000565393 KDM2BQ8NHM5 1336 aa8.46□□□□□ -1.06
TCF4-228ENST00000565393 MRC1P22897 1456 aa8.45□□□□□ -1.06
TCF4-228ENST00000565393 NBPF26B4DH59 902 aa8.45□□□□□ -1.06
TCF4-228ENST00000565393 TOMM70O94826 608 aa8.45□□□□□ -1.06
TCF4-228ENST00000565393 MYL6BP14649 208 aa8.45□□□□□ -1.06
TCF4-228ENST00000565393 HSPA6P17066 643 aa8.45□□□□□ -1.06
TCF4-228ENST00000565393 RASSF7Q02833 373 aa8.45□□□□□ -1.06
TCF4-228ENST00000565393 NEUROD2Q15784 382 aa8.45□□□□□ -1.06
TCF4-228ENST00000565393 NBPF10Q6P3W6 841 aaKnown RBP8.45□□□□□ -1.06
TCF4-228ENST00000565393 CLEC4GQ6UXB4 293 aa8.45□□□□□ -1.06
TCF4-228ENST00000565393 NBPF15Q8N660 670 aa8.45□□□□□ -1.06
TCF4-228ENST00000565393 PDZRN3Q9UPQ7 1066 aa8.45□□□□□ -1.06
TCF4-228ENST00000565393 NIP7Q9Y221 180 aaKnown RBP eCLIP8.45□□□□□ -1.06
TCF4-228ENST00000565393 ZNF831Q5JPB2 1677 aa8.45□□□□□ -1.06
TCF4-228ENST00000565393 ADCY9O60503 1353 aa8.45□□□□□ -1.06
TCF4-228ENST00000565393 LMNB1P20700 586 aa8.44□□□□□ -1.06
TCF4-228ENST00000565393 EIF4A1P60842 406 aaKnown RBP8.44□□□□□ -1.06
TCF4-228ENST00000565393 DPY19L2Q6NUT2 758 aa8.44□□□□□ -1.06
TCF4-228ENST00000565393 CNKSR1Q969H4 720 aa8.44□□□□□ -1.06
TCF4-228ENST00000565393 CARMIL3Q8ND23 1372 aa8.44□□□□□ -1.06
TCF4-228ENST00000565393 C4AP0C0L4 1744 aa8.43□□□□□ -1.06
TCF4-228ENST00000565393 EIF2S2P20042 333 aaKnown RBP8.43□□□□□ -1.06
TCF4-228ENST00000565393 WDR43Q15061 677 aaKnown RBP eCLIP8.43□□□□□ -1.06
TCF4-228ENST00000565393 HLFQ16534 295 aa8.43□□□□□ -1.06
TCF4-228ENST00000565393 STYK1Q6J9G0 422 aa8.43□□□□□ -1.06
TCF4-228ENST00000565393 MASTLQ96GX5 879 aa8.43□□□□□ -1.06
TCF4-228ENST00000565393 TSPYL4Q9UJ04 414 aa8.43□□□□□ -1.06
TCF4-228ENST00000565393 LAS1LQ9Y4W2 734 aaKnown RBP8.43□□□□□ -1.06
TCF4-228ENST00000565393 SCN11AQ9UI33 1791 aa8.43□□□□□ -1.06
TCF4-228ENST00000565393 SRGNP10124 158 aa8.42□□□□□ -1.06
TCF4-228ENST00000565393 TMPOP42166 694 aaKnown RBP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms