RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 HEG1Q9ULI3 1381 aa14.47□□□□□ -0.09
VPS39-208ENST00000564994 KCNQ3O43525 872 aa14.47□□□□□ -0.09
VPS39-208ENST00000564994 USPL1Q5W0Q7 1092 aa14.47□□□□□ -0.09
VPS39-208ENST00000564994 COL15A1P39059 1388 aa14.47□□□□□ -0.09
VPS39-208ENST00000564994 A0A0G2JLW4 131 aa14.46□□□□□ -0.09
VPS39-208ENST00000564994 TM4SF1P30408 202 aa14.46□□□□□ -0.09
VPS39-208ENST00000564994 TGFB2P61812 414 aa14.46□□□□□ -0.09
VPS39-208ENST00000564994 ZPR1O75312 459 aa14.45□□□□□ -0.1
VPS39-208ENST00000564994 CANXP27824 592 aaKnown RBP14.45□□□□□ -0.1
VPS39-208ENST00000564994 DCTN1Q14203 1278 aa14.45□□□□□ -0.1
VPS39-208ENST00000564994 MCM10Q7L590 875 aa14.45□□□□□ -0.1
VPS39-208ENST00000564994 BCL2L12Q9HB09 334 aa14.45□□□□□ -0.1
VPS39-208ENST00000564994 NRXN2Q9P2S2 1712 aa14.45□□□□□ -0.1
VPS39-208ENST00000564994 NARFQ9UHQ1 456 aa14.45□□□□□ -0.1
VPS39-208ENST00000564994 BTBD11A6QL63 1104 aa14.44□□□□□ -0.1
VPS39-208ENST00000564994 POLRMTO00411 1230 aaKnown RBP14.44□□□□□ -0.1
VPS39-208ENST00000564994 STARD3NLO95772 234 aa14.44□□□□□ -0.1
VPS39-208ENST00000564994 DPEP1P16444 411 aa14.44□□□□□ -0.1
VPS39-208ENST00000564994 EIF5P55010 431 aaKnown RBP14.44□□□□□ -0.1
VPS39-208ENST00000564994 ARFGEF1Q9Y6D6 1849 aa14.43□□□□□ -0.1
VPS39-208ENST00000564994 KCNA3P22001 575 aa14.43□□□□□ -0.1
VPS39-208ENST00000564994 FMNL2Q96PY5 1086 aa14.43□□□□□ -0.1
VPS39-208ENST00000564994 SCN7AQ01118 1682 aa14.42□□□□□ -0.1
VPS39-208ENST00000564994 NFIXQ14938 502 aa14.42□□□□□ -0.1
VPS39-208ENST00000564994 RTF1Q92541 710 aaKnown RBP14.42□□□□□ -0.1
VPS39-208ENST00000564994 PLEKHF1Q96S99 279 aa14.42□□□□□ -0.1
VPS39-208ENST00000564994 TEX13AQ9BXU3 409 aaPredicted RBP14.42□□□□□ -0.1
VPS39-208ENST00000564994 ADCY9O60503 1353 aa14.42□□□□□ -0.1
VPS39-208ENST00000564994 ATP10DQ9P241 1426 aa14.41□□□□□ -0.1
VPS39-208ENST00000564994 PRAMEF22A3QJZ6 481 aa14.41□□□□□ -0.1
VPS39-208ENST00000564994 HTATSF1O43719 755 aaKnown RBP14.41□□□□□ -0.1
VPS39-208ENST00000564994 A1BGP04217 495 aa14.41□□□□□ -0.1
VPS39-208ENST00000564994 DDX10Q13206 875 aaKnown RBP14.41□□□□□ -0.1
VPS39-208ENST00000564994 BCS1LQ9Y276 419 aa14.41□□□□□ -0.1
VPS39-208ENST00000564994 BCORQ6W2J9 1755 aa14.4□□□□□ -0.1
VPS39-208ENST00000564994 KDM3BQ7LBC6 1761 aa14.4□□□□□ -0.1
VPS39-208ENST00000564994 USP16Q9Y5T5 823 aa14.4□□□□□ -0.1
VPS39-208ENST00000564994 DLEC1Q9Y238 1755 aa14.39□□□□□ -0.11
VPS39-208ENST00000564994 CHRNA5P30532 468 aa14.39□□□□□ -0.11
VPS39-208ENST00000564994 IL6STP40189 918 aaPredicted RBP14.39□□□□□ -0.11
VPS39-208ENST00000564994 TBC1D2BQ9UPU7 963 aa14.39□□□□□ -0.11
VPS39-208ENST00000564994 ANKRD31Q8N7Z5 1873 aa14.38□□□□□ -0.11
VPS39-208ENST00000564994 A0A087WZG4 1122 aa14.38□□□□□ -0.11
VPS39-208ENST00000564994 PIP4K2AP48426 406 aaPredicted RBP14.38□□□□□ -0.11
VPS39-208ENST00000564994 RALBP1Q15311 655 aa14.38□□□□□ -0.11
VPS39-208ENST00000564994 MIS18AQ9NYP9 233 aa14.38□□□□□ -0.11
VPS39-208ENST00000564994 ZNF330Q9Y3S2 320 aaPredicted RBP14.38□□□□□ -0.11
VPS39-208ENST00000564994 LAMB4A4D0S4 1761 aa14.37□□□□□ -0.11
VPS39-208ENST00000564994 CARMIL3Q8ND23 1372 aa14.37□□□□□ -0.11
VPS39-208ENST00000564994 SERPINB2P05120 415 aa14.37□□□□□ -0.11
VPS39-208ENST00000564994 C1QTNF8P60827 252 aa14.37□□□□□ -0.11
VPS39-208ENST00000564994 TAF7Q15545 349 aaPredicted RBP14.37□□□□□ -0.11
VPS39-208ENST00000564994 TBC1D9BQ66K14 1250 aa14.37□□□□□ -0.11
VPS39-208ENST00000564994 BICDL1Q6ZP65 573 aa14.37□□□□□ -0.11
VPS39-208ENST00000564994 PIM2Q9P1W9 311 aa14.37□□□□□ -0.11
VPS39-208ENST00000564994 SBF1O95248 1867 aa14.36□□□□□ -0.11
VPS39-208ENST00000564994 GIGYF1O75420 1035 aaPredicted RBP14.36□□□□□ -0.11
VPS39-208ENST00000564994 SNRPA1P09661 255 aaKnown RBP14.36□□□□□ -0.11
VPS39-208ENST00000564994 NFE2L2Q16236 605 aa14.36□□□□□ -0.11
VPS39-208ENST00000564994 THUMPD2Q9BTF0 503 aaKnown RBP14.36□□□□□ -0.11
VPS39-208ENST00000564994 CAMTA2O94983 1202 aa14.35□□□□□ -0.11
VPS39-208ENST00000564994 NEFMP07197 916 aa14.35□□□□□ -0.11
VPS39-208ENST00000564994 ARHGAP27Q6ZUM4 889 aa14.35□□□□□ -0.11
VPS39-208ENST00000564994 NBPF26B4DH59 902 aa14.34□□□□□ -0.11
VPS39-208ENST00000564994 DALRD3Q5D0E6 543 aaKnown RBP14.34□□□□□ -0.11
VPS39-208ENST00000564994 NBPF10Q6P3W6 841 aaKnown RBP14.34□□□□□ -0.11
VPS39-208ENST00000564994 NBPF15Q8N660 670 aa14.34□□□□□ -0.11
VPS39-208ENST00000564994 ZNF526Q8TF50 670 aaPredicted RBP14.34□□□□□ -0.11
VPS39-208ENST00000564994 COL11A2P13942 1736 aaPredicted RBP14.34□□□□□ -0.11
VPS39-208ENST00000564994 MYBBP1AQ9BQG0 1328 aaKnown RBP14.34□□□□□ -0.11
VPS39-208ENST00000564994 MAPK8IP3Q9UPT6 1336 aa14.34□□□□□ -0.11
VPS39-208ENST00000564994 DZIP3Q86Y13 1208 aaKnown RBP14.33□□□□□ -0.12
VPS39-208ENST00000564994 PNNQ9H307 717 aaKnown RBP14.33□□□□□ -0.12
VPS39-208ENST00000564994 GPBP1L1Q9HC44 474 aaPredicted RBP14.33□□□□□ -0.12
VPS39-208ENST00000564994 PRR5LQ6MZQ0 368 aa14.32□□□□□ -0.12
VPS39-208ENST00000564994 CCDC24Q8N4L8 307 aa14.32□□□□□ -0.12
VPS39-208ENST00000564994 CCDC88AQ3V6T2 1871 aa14.31□□□□□ -0.12
VPS39-208ENST00000564994 EIF4A1P60842 406 aaKnown RBP14.31□□□□□ -0.12
VPS39-208ENST00000564994 NPM2Q86SE8 214 aaKnown RBP14.31□□□□□ -0.12
VPS39-208ENST00000564994 C2CD5Q86YS7 1000 aa14.31□□□□□ -0.12
VPS39-208ENST00000564994 PNISRQ8TF01 805 aaKnown RBP14.31□□□□□ -0.12
VPS39-208ENST00000564994 CACNA1SQ13698 1873 aa14.31□□□□□ -0.12
VPS39-208ENST00000564994 RIPK4P57078 832 aa14.3□□□□□ -0.12
VPS39-208ENST00000564994 SETDB2Q96T68 719 aa14.3□□□□□ -0.12
VPS39-208ENST00000564994 NUP98P52948 1817 aa14.29□□□□□ -0.12
VPS39-208ENST00000564994 TMPOP42166 694 aaKnown RBP14.29□□□□□ -0.12
VPS39-208ENST00000564994 C9orf131Q5VYM1 1079 aa14.29□□□□□ -0.12
VPS39-208ENST00000564994 BRIP1Q9BX63 1249 aa14.29□□□□□ -0.12
VPS39-208ENST00000564994 CEP350Q5VT06 3117 aa14.29□□□□□ -0.12
VPS39-208ENST00000564994 SENP3-EIF4A1A0A087X0R7 540 aa14.28□□□□□ -0.12
VPS39-208ENST00000564994 H0YIN7 160 aa14.28□□□□□ -0.12
VPS39-208ENST00000564994 KIF3CO14782 793 aa14.28□□□□□ -0.12
VPS39-208ENST00000564994 CLEC4GQ6UXB4 293 aa14.28□□□□□ -0.12
VPS39-208ENST00000564994 CCDC146Q8IYE0 955 aa14.28□□□□□ -0.12
VPS39-208ENST00000564994 TTLL6Q8N841 843 aa14.28□□□□□ -0.12
VPS39-208ENST00000564994 ARFGEF2Q9Y6D5 1785 aa14.27□□□□□ -0.12
VPS39-208ENST00000564994 PRELPP51888 382 aa14.27□□□□□ -0.13
VPS39-208ENST00000564994 RASSF7Q02833 373 aa14.27□□□□□ -0.13
VPS39-208ENST00000564994 HLFQ16534 295 aa14.27□□□□□ -0.13
VPS39-208ENST00000564994 CNBD1Q8NA66 436 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms