RNA–Protein interactions for RNA: ENST00000564703.1

RAB40C-208, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 921 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-208ENST00000564703 CANXP27824 592 aaKnown RBP20.78■□□□□ 0.92
RAB40C-208ENST00000564703 RFC4P35249 363 aa20.78■□□□□ 0.92
RAB40C-208ENST00000564703 INTS5Q6P9B9 1019 aaKnown RBP20.78■□□□□ 0.92
RAB40C-208ENST00000564703 PDGFDQ9GZP0 370 aaPredicted RBP20.78■□□□□ 0.92
RAB40C-208ENST00000564703 GIGYF1O75420 1035 aaPredicted RBP20.77■□□□□ 0.92
RAB40C-208ENST00000564703 ZBTB7AO95365 584 aa20.77■□□□□ 0.92
RAB40C-208ENST00000564703 WDR63Q8IWG1 891 aa20.77■□□□□ 0.92
RAB40C-208ENST00000564703 MTFR1LQ9H019 292 aa20.77■□□□□ 0.92
RAB40C-208ENST00000564703 ATF5Q9Y2D1 282 aaPredicted RBP20.77■□□□□ 0.92
RAB40C-208ENST00000564703 UBR2Q8IWV8 1755 aa20.77■□□□□ 0.91
RAB40C-208ENST00000564703 PRAMEF22A3QJZ6 481 aa20.75■□□□□ 0.91
RAB40C-208ENST00000564703 A1BGP04217 495 aa20.75■□□□□ 0.91
RAB40C-208ENST00000564703 ZNF853P0CG23 659 aa20.75■□□□□ 0.91
RAB40C-208ENST00000564703 SMIM5Q71RC9 77 aa20.75■□□□□ 0.91
RAB40C-208ENST00000564703 ARHGEF1Q92888 912 aaKnown RBP20.75■□□□□ 0.91
RAB40C-208ENST00000564703 MBIPQ9NS73 344 aa20.75■□□□□ 0.91
RAB40C-208ENST00000564703 ZNF330Q9Y3S2 320 aaPredicted RBP20.75■□□□□ 0.91
RAB40C-208ENST00000564703 IL16Q14005 1332 aa20.75■□□□□ 0.91
RAB40C-208ENST00000564703 ARXQ96QS3 562 aa20.74■□□□□ 0.91
RAB40C-208ENST00000564703 ZBTB1Q9Y2K1 713 aa20.74■□□□□ 0.91
RAB40C-208ENST00000564703 A0A087WZG4 1122 aa20.73■□□□□ 0.91
RAB40C-208ENST00000564703 ZPR1O75312 459 aa20.73■□□□□ 0.91
RAB40C-208ENST00000564703 EIF2S2P20042 333 aaKnown RBP20.73■□□□□ 0.91
RAB40C-208ENST00000564703 COL5A3P25940 1745 aaPredicted RBP20.73■□□□□ 0.91
RAB40C-208ENST00000564703 TJP1Q07157 1748 aa20.73■□□□□ 0.91
RAB40C-208ENST00000564703 MYH14Q7Z406 1995 aaKnown RBP20.72■□□□□ 0.91
RAB40C-208ENST00000564703 POLD1P28340 1107 aa20.72■□□□□ 0.91
RAB40C-208ENST00000564703 AMIGO3Q86WK7 504 aa20.72■□□□□ 0.91
RAB40C-208ENST00000564703 KDM3BQ7LBC6 1761 aa20.72■□□□□ 0.91
RAB40C-208ENST00000564703 QSER1Q2KHR3 1735 aa20.71■□□□□ 0.91
RAB40C-208ENST00000564703 IL6STP40189 918 aaPredicted RBP20.71■□□□□ 0.91
RAB40C-208ENST00000564703 CHMP4AQ9BY43 222 aa20.71■□□□□ 0.91
RAB40C-208ENST00000564703 PPP1R1BQ9UD71 204 aaPredicted RBP20.71■□□□□ 0.91
RAB40C-208ENST00000564703 UBR3Q6ZT12 1888 aa20.71■□□□□ 0.91
RAB40C-208ENST00000564703 CICQ96RK0 1608 aaPredicted RBP20.71■□□□□ 0.91
RAB40C-208ENST00000564703 EIF5P55010 431 aaKnown RBP20.7■□□□□ 0.9
RAB40C-208ENST00000564703 NLGN1Q8N2Q7 840 aa20.7■□□□□ 0.9
RAB40C-208ENST00000564703 SOS1Q07889 1333 aaPredicted RBP20.7■□□□□ 0.9
RAB40C-208ENST00000564703 MYH16Q9H6N6 1097 aa20.69■□□□□ 0.9
RAB40C-208ENST00000564703 ELL2O00472 640 aaPredicted RBP20.68■□□□□ 0.9
RAB40C-208ENST00000564703 HOXB7P09629 217 aa20.68■□□□□ 0.9
RAB40C-208ENST00000564703 GOLGA2Q08379 1002 aa20.68■□□□□ 0.9
RAB40C-208ENST00000564703 DUSP27Q5VZP5 1158 aa20.68■□□□□ 0.9
RAB40C-208ENST00000564703 MSL1Q68DK7 614 aa20.68■□□□□ 0.9
RAB40C-208ENST00000564703 TUBGCP6Q96RT7 1819 aa20.68■□□□□ 0.9
RAB40C-208ENST00000564703 PIP4K2AP48426 406 aaPredicted RBP20.67■□□□□ 0.9
RAB40C-208ENST00000564703 KRT24Q2M2I5 525 aa20.67■□□□□ 0.9
RAB40C-208ENST00000564703 TSR2Q969E8 191 aaKnown RBP20.67■□□□□ 0.9
RAB40C-208ENST00000564703 NARFQ9UHQ1 456 aa20.67■□□□□ 0.9
RAB40C-208ENST00000564703 CASZ1Q86V15 1759 aa20.67■□□□□ 0.9
RAB40C-208ENST00000564703 NECTIN2Q92692 538 aa20.66■□□□□ 0.9
RAB40C-208ENST00000564703 TBC1D2BQ9UPU7 963 aa20.66■□□□□ 0.9
RAB40C-208ENST00000564703 ERBB4Q15303 1308 aa20.66■□□□□ 0.9
RAB40C-208ENST00000564703 COL15A1P39059 1388 aa20.66■□□□□ 0.9
RAB40C-208ENST00000564703 MYL6BP14649 208 aa20.65■□□□□ 0.9
RAB40C-208ENST00000564703 HDGFL1Q5TGJ6 251 aa20.65■□□□□ 0.9
RAB40C-208ENST00000564703 USPL1Q5W0Q7 1092 aa20.65■□□□□ 0.9
RAB40C-208ENST00000564703 DZIP3Q86Y13 1208 aaKnown RBP20.65■□□□□ 0.9
RAB40C-208ENST00000564703 SRP68Q9UHB9 627 aaKnown RBP20.65■□□□□ 0.9
RAB40C-208ENST00000564703 USP42Q9H9J4 1324 aaKnown RBP20.64■□□□□ 0.89
RAB40C-208ENST00000564703 NBPF26B4DH59 902 aa20.64■□□□□ 0.89
RAB40C-208ENST00000564703 GYS1P13807 737 aa20.64■□□□□ 0.89
RAB40C-208ENST00000564703 NBPF10Q6P3W6 841 aaKnown RBP20.64■□□□□ 0.89
RAB40C-208ENST00000564703 NBPF15Q8N660 670 aa20.64■□□□□ 0.89
RAB40C-208ENST00000564703 PTGER2P43116 358 aa20.63■□□□□ 0.89
RAB40C-208ENST00000564703 C8orf58Q8NAV2 365 aa20.63■□□□□ 0.89
RAB40C-208ENST00000564703 HNRNPUQ00839 825 aaKnown RBP eCLIP20.62■□□□□ 0.89
RAB40C-208ENST00000564703 DBF4Q9UBU7 674 aaPredicted RBP20.62■□□□□ 0.89
RAB40C-208ENST00000564703 ZNF521Q96K83 1311 aa20.61■□□□□ 0.89
RAB40C-208ENST00000564703 FANCIQ9NVI1 1328 aa20.61■□□□□ 0.89
RAB40C-208ENST00000564703 E9PSI1 815 aa20.61■□□□□ 0.89
RAB40C-208ENST00000564703 TWISTNBQ3B726 338 aaPredicted RBP20.61■□□□□ 0.89
RAB40C-208ENST00000564703 CCDC30Q5VVM6 783 aa20.61■□□□□ 0.89
RAB40C-208ENST00000564703 DDX21Q9NR30 783 aaKnown RBP eCLIP20.61■□□□□ 0.89
RAB40C-208ENST00000564703 PARP3Q9Y6F1 533 aa20.61■□□□□ 0.89
RAB40C-208ENST00000564703 MMP10P09238 476 aa20.6■□□□□ 0.89
RAB40C-208ENST00000564703 KIF6Q6ZMV9 814 aa20.6■□□□□ 0.89
RAB40C-208ENST00000564703 SGIP1Q9BQI5 828 aa20.6■□□□□ 0.89
RAB40C-208ENST00000564703 ZNF652Q9Y2D9 606 aa20.6■□□□□ 0.89
RAB40C-208ENST00000564703 EXOSC9Q06265 439 aaKnown RBP20.59■□□□□ 0.89
RAB40C-208ENST00000564703 FKBP8Q14318 412 aa20.59■□□□□ 0.89
RAB40C-208ENST00000564703 TSPYL6Q8N831 410 aa20.59■□□□□ 0.89
RAB40C-208ENST00000564703 SPINK5Q9NQ38 1064 aaPredicted RBP20.59■□□□□ 0.89
RAB40C-208ENST00000564703 LAMB4A4D0S4 1761 aa20.59■□□□□ 0.89
RAB40C-208ENST00000564703 KLHL34Q8N239 644 aa20.58■□□□□ 0.89
RAB40C-208ENST00000564703 STK31Q9BXU1 1019 aa20.58■□□□□ 0.89
RAB40C-208ENST00000564703 HYPKQ9NX55 129 aa20.58■□□□□ 0.89
RAB40C-208ENST00000564703 CHPF2Q9P2E5 772 aa20.58■□□□□ 0.89
RAB40C-208ENST00000564703 ANXA1P04083 346 aa20.57■□□□□ 0.88
RAB40C-208ENST00000564703 SLFN5Q08AF3 891 aa20.57■□□□□ 0.88
RAB40C-208ENST00000564703 AIMP1Q12904 312 aaKnown RBP20.57■□□□□ 0.88
RAB40C-208ENST00000564703 PDIA6Q15084 440 aa20.57■□□□□ 0.88
RAB40C-208ENST00000564703 CLEC4GQ6UXB4 293 aa20.57■□□□□ 0.88
RAB40C-208ENST00000564703 BICDL1Q6ZP65 573 aa20.57■□□□□ 0.88
RAB40C-208ENST00000564703 CAMTA2O94983 1202 aa20.56■□□□□ 0.88
RAB40C-208ENST00000564703 COPS6Q7L5N1 327 aa20.56■□□□□ 0.88
RAB40C-208ENST00000564703 LRP5O75197 1615 aa20.56■□□□□ 0.88
RAB40C-208ENST00000564703 ERVV-1B6SEH8 477 aa20.55■□□□□ 0.88
RAB40C-208ENST00000564703 TM4SF1P30408 202 aa20.55■□□□□ 0.88
RAB40C-208ENST00000564703 PROSER3Q2NL68 480 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms