RNA–Protein interactions for RNA: ENST00000564676.5

CDH1-206, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 969 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-206ENST00000564676 NEUROD2Q15784 382 aa13.09□□□□□ -0.31
CDH1-206ENST00000564676 UBR3Q6ZT12 1888 aa13.09□□□□□ -0.31
CDH1-206ENST00000564676 FMNL2Q96PY5 1086 aa13.09□□□□□ -0.31
CDH1-206ENST00000564676 ARXQ96QS3 562 aa13.09□□□□□ -0.31
CDH1-206ENST00000564676 SGIP1Q9BQI5 828 aa13.09□□□□□ -0.31
CDH1-206ENST00000564676 THUMPD2Q9BTF0 503 aaKnown RBP13.09□□□□□ -0.31
CDH1-206ENST00000564676 RRP7AQ9Y3A4 280 aaKnown RBP13.09□□□□□ -0.31
CDH1-206ENST00000564676 ZBTB22O15209 634 aa13.08□□□□□ -0.32
CDH1-206ENST00000564676 STARD3NLO95772 234 aa13.08□□□□□ -0.32
CDH1-206ENST00000564676 CYP19A1P11511 503 aaPredicted RBP13.08□□□□□ -0.32
CDH1-206ENST00000564676 RFC4P35249 363 aa13.08□□□□□ -0.32
CDH1-206ENST00000564676 LMOD3Q0VAK6 560 aa13.08□□□□□ -0.32
CDH1-206ENST00000564676 CCDC184Q52MB2 194 aa13.08□□□□□ -0.32
CDH1-206ENST00000564676 TEX13AQ9BXU3 409 aaPredicted RBP13.08□□□□□ -0.32
CDH1-206ENST00000564676 CCDC87Q9NVE4 849 aa13.08□□□□□ -0.32
CDH1-206ENST00000564676 MIS18AQ9NYP9 233 aa13.08□□□□□ -0.32
CDH1-206ENST00000564676 MYH14Q7Z406 1995 aaKnown RBP13.08□□□□□ -0.32
CDH1-206ENST00000564676 KCPQ6ZWJ8 1503 aa13.08□□□□□ -0.32
CDH1-206ENST00000564676 HEG1Q9ULI3 1381 aa13.07□□□□□ -0.32
CDH1-206ENST00000564676 SIPA1L3O60292 1781 aaPredicted RBP13.07□□□□□ -0.32
CDH1-206ENST00000564676 INTS5Q6P9B9 1019 aaKnown RBP13.07□□□□□ -0.32
CDH1-206ENST00000564676 KLHL34Q8N239 644 aa13.07□□□□□ -0.32
CDH1-206ENST00000564676 PNISRQ8TF01 805 aaKnown RBP13.07□□□□□ -0.32
CDH1-206ENST00000564676 ARHGEF1Q92888 912 aaKnown RBP13.07□□□□□ -0.32
CDH1-206ENST00000564676 MRS2Q9HD23 443 aa13.07□□□□□ -0.32
CDH1-206ENST00000564676 COL5A3P25940 1745 aaPredicted RBP13.07□□□□□ -0.32
CDH1-206ENST00000564676 TJP1Q07157 1748 aa13.06□□□□□ -0.32
CDH1-206ENST00000564676 CANXP27824 592 aaKnown RBP13.05□□□□□ -0.32
CDH1-206ENST00000564676 FHDC1Q9C0D6 1143 aaPredicted RBP13.05□□□□□ -0.32
CDH1-206ENST00000564676 ZBTB1Q9Y2K1 713 aa13.05□□□□□ -0.32
CDH1-206ENST00000564676 UBR2Q8IWV8 1755 aa13.04□□□□□ -0.32
CDH1-206ENST00000564676 SNRPA1P09661 255 aaKnown RBP13.04□□□□□ -0.32
CDH1-206ENST00000564676 SOS1Q07889 1333 aaPredicted RBP13.04□□□□□ -0.32
CDH1-206ENST00000564676 CICQ96RK0 1608 aaPredicted RBP13.03□□□□□ -0.32
CDH1-206ENST00000564676 APAF1O14727 1248 aa13.03□□□□□ -0.32
CDH1-206ENST00000564676 ZPR1O75312 459 aa13.03□□□□□ -0.32
CDH1-206ENST00000564676 NPM2Q86SE8 214 aaKnown RBP13.03□□□□□ -0.32
CDH1-206ENST00000564676 NLGN1Q8N2Q7 840 aa13.03□□□□□ -0.32
CDH1-206ENST00000564676 SYT17Q9BSW7 474 aa13.03□□□□□ -0.32
CDH1-206ENST00000564676 SRP68Q9UHB9 627 aaKnown RBP13.03□□□□□ -0.32
CDH1-206ENST00000564676 TSPYL4Q9UJ04 414 aa13.03□□□□□ -0.32
CDH1-206ENST00000564676 ZNF330Q9Y3S2 320 aaPredicted RBP13.03□□□□□ -0.32
CDH1-206ENST00000564676 USP16Q9Y5T5 823 aa13.03□□□□□ -0.32
CDH1-206ENST00000564676 PRAMEF22A3QJZ6 481 aa13.02□□□□□ -0.33
CDH1-206ENST00000564676 A1BGP04217 495 aa13.02□□□□□ -0.33
CDH1-206ENST00000564676 POLA2Q14181 598 aa13.02□□□□□ -0.33
CDH1-206ENST00000564676 TRIM35Q9UPQ4 493 aa13.02□□□□□ -0.33
CDH1-206ENST00000564676 LAS1LQ9Y4W2 734 aaKnown RBP13.02□□□□□ -0.33
CDH1-206ENST00000564676 A0A087WZG4 1122 aa13.01□□□□□ -0.33
CDH1-206ENST00000564676 MMP10P09238 476 aa13.01□□□□□ -0.33
CDH1-206ENST00000564676 GYS1P13807 737 aa13.01□□□□□ -0.33
CDH1-206ENST00000564676 EIF4A1P60842 406 aaKnown RBP13.01□□□□□ -0.33
CDH1-206ENST00000564676 USP42Q9H9J4 1324 aaKnown RBP13.01□□□□□ -0.33
CDH1-206ENST00000564676 COL24A1Q17RW2 1714 aa13.01□□□□□ -0.33
CDH1-206ENST00000564676 COL15A1P39059 1388 aa13□□□□□ -0.33
CDH1-206ENST00000564676 EIF5P55010 431 aaKnown RBP13□□□□□ -0.33
CDH1-206ENST00000564676 USPL1Q5W0Q7 1092 aa13□□□□□ -0.33
CDH1-206ENST00000564676 BABAM1Q9NWV8 329 aa13□□□□□ -0.33
CDH1-206ENST00000564676 NARFQ9UHQ1 456 aa13□□□□□ -0.33
CDH1-206ENST00000564676 GIGYF1O75420 1035 aaPredicted RBP12.99□□□□□ -0.33
CDH1-206ENST00000564676 IL6STP40189 918 aaPredicted RBP12.99□□□□□ -0.33
CDH1-206ENST00000564676 FKBP8Q14318 412 aa12.99□□□□□ -0.33
CDH1-206ENST00000564676 PARP3Q9Y6F1 533 aa12.99□□□□□ -0.33
CDH1-206ENST00000564676 PIP4K2AP48426 406 aaPredicted RBP12.98□□□□□ -0.33
CDH1-206ENST00000564676 CD2APQ9Y5K6 639 aa12.98□□□□□ -0.33
CDH1-206ENST00000564676 C4AP0C0L4 1744 aa12.97□□□□□ -0.33
CDH1-206ENST00000564676 SENP3-EIF4A1A0A087X0R7 540 aa12.97□□□□□ -0.33
CDH1-206ENST00000564676 CHL1O00533 1208 aa12.97□□□□□ -0.33
CDH1-206ENST00000564676 CALD1Q05682 793 aaKnown RBP12.97□□□□□ -0.33
CDH1-206ENST00000564676 FAM9BQ8IZU0 186 aa12.97□□□□□ -0.33
CDH1-206ENST00000564676 TBC1D2BQ9UPU7 963 aa12.97□□□□□ -0.33
CDH1-206ENST00000564676 KDM3BQ7LBC6 1761 aa12.97□□□□□ -0.33
CDH1-206ENST00000564676 NLGN2Q8NFZ4 835 aa12.96□□□□□ -0.33
CDH1-206ENST00000564676 NBPF26B4DH59 902 aa12.95□□□□□ -0.34
CDH1-206ENST00000564676 EIF2S2P20042 333 aaKnown RBP12.95□□□□□ -0.34
CDH1-206ENST00000564676 NBPF10Q6P3W6 841 aaKnown RBP12.95□□□□□ -0.34
CDH1-206ENST00000564676 DZIP3Q86Y13 1208 aaKnown RBP12.95□□□□□ -0.34
CDH1-206ENST00000564676 PELP1Q8IZL8 1130 aaKnown RBP12.95□□□□□ -0.34
CDH1-206ENST00000564676 NGEFQ8N5V2 710 aa12.95□□□□□ -0.34
CDH1-206ENST00000564676 NBPF15Q8N660 670 aa12.95□□□□□ -0.34
CDH1-206ENST00000564676 CFAP44Q96MT7 982 aa12.95□□□□□ -0.34
CDH1-206ENST00000564676 BCL2L12Q9HB09 334 aa12.95□□□□□ -0.34
CDH1-206ENST00000564676 TM4SF1P30408 202 aa12.94□□□□□ -0.34
CDH1-206ENST00000564676 GNAI1P63096 354 aa12.94□□□□□ -0.34
CDH1-206ENST00000564676 DDR1Q08345 913 aa12.94□□□□□ -0.34
CDH1-206ENST00000564676 NFIXQ14938 502 aa12.94□□□□□ -0.34
CDH1-206ENST00000564676 GPR162Q16538 588 aa12.94□□□□□ -0.34
CDH1-206ENST00000564676 BICDL1Q6ZP65 573 aa12.94□□□□□ -0.34
CDH1-206ENST00000564676 SALL2Q9Y467 1007 aaPredicted RBP12.94□□□□□ -0.34
CDH1-206ENST00000564676 CAMTA2O94983 1202 aa12.93□□□□□ -0.34
CDH1-206ENST00000564676 MYL6BP14649 208 aa12.93□□□□□ -0.34
CDH1-206ENST00000564676 MBIPQ9NS73 344 aa12.93□□□□□ -0.34
CDH1-206ENST00000564676 IFT57Q9NWB7 429 aa12.93□□□□□ -0.34
CDH1-206ENST00000564676 POLRMTO00411 1230 aaKnown RBP12.92□□□□□ -0.34
CDH1-206ENST00000564676 CCDC27Q2M243 656 aa12.92□□□□□ -0.34
CDH1-206ENST00000564676 KRT24Q2M2I5 525 aa12.92□□□□□ -0.34
CDH1-206ENST00000564676 TBC1D9BQ66K14 1250 aa12.92□□□□□ -0.34
CDH1-206ENST00000564676 NECTIN2Q92692 538 aa12.92□□□□□ -0.34
CDH1-206ENST00000564676 LAMB4A4D0S4 1761 aa12.92□□□□□ -0.34
CDH1-206ENST00000564676 ERBB4Q15303 1308 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms