RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 ERBB4Q15303 1308 aa26.55■■□□□ 1.84
CLN3-212ENST00000564574 CCDC30Q5VVM6 783 aa26.54■■□□□ 1.84
CLN3-212ENST00000564574 CAMKK2Q96RR4 588 aa26.54■■□□□ 1.84
CLN3-212ENST00000564574 EIF2S2P20042 333 aaKnown RBP26.53■■□□□ 1.84
CLN3-212ENST00000564574 C4BP0C0L5 1744 aa26.52■■□□□ 1.84
CLN3-212ENST00000564574 CYP19A1P11511 503 aaPredicted RBP26.52■■□□□ 1.84
CLN3-212ENST00000564574 ALDH1L2Q3SY69 923 aa26.52■■□□□ 1.84
CLN3-212ENST00000564574 PROM2Q8N271 834 aa26.52■■□□□ 1.84
CLN3-212ENST00000564574 EN1Q05925 392 aaPredicted RBP26.51■■□□□ 1.83
CLN3-212ENST00000564574 LRRC4BQ9NT99 713 aa26.51■■□□□ 1.83
CLN3-212ENST00000564574 CNTNAP4Q9C0A0 1308 aa26.5■■□□□ 1.83
CLN3-212ENST00000564574 MYH14Q7Z406 1995 aaKnown RBP26.5■■□□□ 1.83
CLN3-212ENST00000564574 LINC00116Q8NCU8 138 aa26.5■■□□□ 1.83
CLN3-212ENST00000564574 NUP188Q5SRE5 1749 aa26.49■■□□□ 1.83
CLN3-212ENST00000564574 EZH2Q15910 746 aaKnown RBP26.49■■□□□ 1.83
CLN3-212ENST00000564574 RC3H1Q5TC82 1133 aaKnown RBP26.49■■□□□ 1.83
CLN3-212ENST00000564574 STK31Q9BXU1 1019 aa26.49■■□□□ 1.83
CLN3-212ENST00000564574 DBF4Q9UBU7 674 aaPredicted RBP26.49■■□□□ 1.83
CLN3-212ENST00000564574 CENPBP07199 599 aaPredicted RBP26.48■■□□□ 1.83
CLN3-212ENST00000564574 DEFB132Q7Z7B7 95 aa26.48■■□□□ 1.83
CLN3-212ENST00000564574 CCDC87Q9NVE4 849 aa26.48■■□□□ 1.83
CLN3-212ENST00000564574 CRKLP46109 303 aaKnown RBP26.47■■□□□ 1.83
CLN3-212ENST00000564574 RARSP54136 660 aaKnown RBP26.47■■□□□ 1.83
CLN3-212ENST00000564574 KCNQ4P56696 695 aa26.47■■□□□ 1.83
CLN3-212ENST00000564574 NECTIN2Q92692 538 aa26.47■■□□□ 1.83
CLN3-212ENST00000564574 DDX21Q9NR30 783 aaKnown RBP eCLIP26.46■■□□□ 1.83
CLN3-212ENST00000564574 RCAN3Q9UKA8 241 aa26.46■■□□□ 1.83
CLN3-212ENST00000564574 A1BGP04217 495 aa26.45■■□□□ 1.82
CLN3-212ENST00000564574 SSH1Q8WYL5 1049 aa26.45■■□□□ 1.82
CLN3-212ENST00000564574 CHPF2Q9P2E5 772 aa26.45■■□□□ 1.82
CLN3-212ENST00000564574 PDIA6Q15084 440 aa26.44■■□□□ 1.82
CLN3-212ENST00000564574 INTS5Q6P9B9 1019 aaKnown RBP26.44■■□□□ 1.82
CLN3-212ENST00000564574 HYPKQ9NX55 129 aa26.44■■□□□ 1.82
CLN3-212ENST00000564574 UBR3Q6ZT12 1888 aa26.43■■□□□ 1.82
CLN3-212ENST00000564574 BRPF1P55201 1214 aaPredicted RBP26.43■■□□□ 1.82
CLN3-212ENST00000564574 SMC4Q9NTJ3 1288 aa26.43■■□□□ 1.82
CLN3-212ENST00000564574 ZBTB1Q9Y2K1 713 aa26.43■■□□□ 1.82
CLN3-212ENST00000564574 NBPF26B4DH59 902 aa26.42■■□□□ 1.82
CLN3-212ENST00000564574 SLC4A2P04920 1241 aa26.42■■□□□ 1.82
CLN3-212ENST00000564574 IL6STP40189 918 aaPredicted RBP26.42■■□□□ 1.82
CLN3-212ENST00000564574 NBPF14Q5TI25 921 aa26.42■■□□□ 1.82
CLN3-212ENST00000564574 NBPF10Q6P3W6 841 aaKnown RBP26.42■■□□□ 1.82
CLN3-212ENST00000564574 MRPL50Q8N5N7 158 aaKnown RBP26.42■■□□□ 1.82
CLN3-212ENST00000564574 NBPF15Q8N660 670 aa26.42■■□□□ 1.82
CLN3-212ENST00000564574 AK7Q96M32 723 aa26.41■■□□□ 1.82
CLN3-212ENST00000564574 TCERG1O14776 1098 aaKnown RBP26.4■■□□□ 1.82
CLN3-212ENST00000564574 RPS6KA4O75676 772 aa26.4■■□□□ 1.82
CLN3-212ENST00000564574 CANXP27824 592 aaKnown RBP26.4■■□□□ 1.82
CLN3-212ENST00000564574 QSER1Q2KHR3 1735 aa26.39■■□□□ 1.82
CLN3-212ENST00000564574 MYL6BP14649 208 aa26.39■■□□□ 1.82
CLN3-212ENST00000564574 KIF16BQ96L93 1317 aa26.39■■□□□ 1.81
CLN3-212ENST00000564574 PROSER3Q2NL68 480 aa26.38■■□□□ 1.81
CLN3-212ENST00000564574 LRP10Q7Z4F1 713 aa26.38■■□□□ 1.81
CLN3-212ENST00000564574 NPM2Q86SE8 214 aaKnown RBP26.38■■□□□ 1.81
CLN3-212ENST00000564574 AKT1S1Q96B36 256 aa26.38■■□□□ 1.81
CLN3-212ENST00000564574 BCL2L13Q9BXK5 485 aa26.38■■□□□ 1.81
CLN3-212ENST00000564574 TUBGCP6Q96RT7 1819 aa26.37■■□□□ 1.81
CLN3-212ENST00000564574 GNPATO15228 680 aa26.37■■□□□ 1.81
CLN3-212ENST00000564574 ANXA1P04083 346 aa26.37■■□□□ 1.81
CLN3-212ENST00000564574 PIP4K2AP48426 406 aaPredicted RBP26.37■■□□□ 1.81
CLN3-212ENST00000564574 EIF5P55010 431 aaKnown RBP26.37■■□□□ 1.81
CLN3-212ENST00000564574 RTCBQ9Y3I0 505 aaKnown RBP26.37■■□□□ 1.81
CLN3-212ENST00000564574 A0A087WZG4 1122 aa26.36■■□□□ 1.81
CLN3-212ENST00000564574 BCAR3O75815 825 aa26.36■■□□□ 1.81
CLN3-212ENST00000564574 COL15A1P39059 1388 aa26.35■■□□□ 1.81
CLN3-212ENST00000564574 ADRA2BP18089 450 aa26.35■■□□□ 1.81
CLN3-212ENST00000564574 STK32BQ9NY57 414 aa26.35■■□□□ 1.81
CLN3-212ENST00000564574 SSFA2P28290 1259 aa26.34■■□□□ 1.81
CLN3-212ENST00000564574 FLIIQ13045 1269 aa26.34■■□□□ 1.81
CLN3-212ENST00000564574 PHAXQ9H814 394 aaKnown RBP26.34■■□□□ 1.81
CLN3-212ENST00000564574 PTPRCP08575 1304 aa26.34■■□□□ 1.81
CLN3-212ENST00000564574 C4AP0C0L4 1744 aa26.34■■□□□ 1.81
CLN3-212ENST00000564574 ZNF827Q17R98 1081 aa26.33■■□□□ 1.81
CLN3-212ENST00000564574 G2E3Q7L622 706 aa26.33■■□□□ 1.81
CLN3-212ENST00000564574 XAGE3Q8WTP9 111 aa26.33■■□□□ 1.81
CLN3-212ENST00000564574 SRCAPQ6ZRS2 3230 aa26.32■■□□□ 1.8
CLN3-212ENST00000564574 IPO8O15397 1037 aaKnown RBP26.32■■□□□ 1.8
CLN3-212ENST00000564574 DDX58O95786 925 aaKnown RBP26.32■■□□□ 1.8
CLN3-212ENST00000564574 SLC15A2Q16348 729 aa26.32■■□□□ 1.8
CLN3-212ENST00000564574 COPS6Q7L5N1 327 aa26.32■■□□□ 1.8
CLN3-212ENST00000564574 FLAD1Q8NFF5 587 aa26.32■■□□□ 1.8
CLN3-212ENST00000564574 ARHGAP45Q92619 1136 aa26.32■■□□□ 1.8
CLN3-212ENST00000564574 ZNF330Q9Y3S2 320 aaPredicted RBP26.32■■□□□ 1.8
CLN3-212ENST00000564574 BCORQ6W2J9 1755 aa26.32■■□□□ 1.8
CLN3-212ENST00000564574 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.31■■□□□ 1.8
CLN3-212ENST00000564574 TFCP2L1Q9NZI6 479 aa26.31■■□□□ 1.8
CLN3-212ENST00000564574 NOB1Q9ULX3 412 aaKnown RBP26.31■■□□□ 1.8
CLN3-212ENST00000564574 TRAPPC3LQ5T215 181 aa26.3■■□□□ 1.8
CLN3-212ENST00000564574 KIF6Q6ZMV9 814 aa26.3■■□□□ 1.8
CLN3-212ENST00000564574 ARFGEF2Q9Y6D5 1785 aa26.3■■□□□ 1.8
CLN3-212ENST00000564574 SCN7AQ01118 1682 aa26.29■■□□□ 1.8
CLN3-212ENST00000564574 AIMP1Q12904 312 aaKnown RBP26.29■■□□□ 1.8
CLN3-212ENST00000564574 FKBP5Q13451 457 aaPredicted RBP26.29■■□□□ 1.8
CLN3-212ENST00000564574 DZIP3Q86Y13 1208 aaKnown RBP26.29■■□□□ 1.8
CLN3-212ENST00000564574 ANO8Q9HCE9 1232 aaPredicted RBP26.29■■□□□ 1.8
CLN3-212ENST00000564574 ZKSCAN2Q63HK3 967 aa26.28■■□□□ 1.8
CLN3-212ENST00000564574 API5Q9BZZ5 524 aaKnown RBP26.28■■□□□ 1.8
CLN3-212ENST00000564574 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.27■■□□□ 1.8
CLN3-212ENST00000564574 RGL2O15211 777 aa26.27■■□□□ 1.8
CLN3-212ENST00000564574 KSR2Q6VAB6 950 aa26.27■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms