RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 NFKBIEO00221 500 aa14.42□□□□□ -0.1
SF3B3-204ENST00000563739 PTCD1O75127 700 aaKnown RBP14.42□□□□□ -0.1
SF3B3-204ENST00000563739 CACNA1SQ13698 1873 aa14.42□□□□□ -0.1
SF3B3-204ENST00000563739 HSPA1AP0DMV8 641 aaKnown RBP14.41□□□□□ -0.1
SF3B3-204ENST00000563739 HSPA1BP0DMV9 641 aaKnown RBP14.41□□□□□ -0.1
SF3B3-204ENST00000563739 SIPA1L3O60292 1781 aaPredicted RBP14.41□□□□□ -0.1
SF3B3-204ENST00000563739 ZC3H4Q9UPT8 1303 aaKnown RBP14.41□□□□□ -0.1
SF3B3-204ENST00000563739 TNNT2P45379 298 aaPredicted RBP14.4□□□□□ -0.1
SF3B3-204ENST00000563739 DNAJC10Q8IXB1 793 aa14.4□□□□□ -0.1
SF3B3-204ENST00000563739 SMC1BQ8NDV3 1235 aa14.4□□□□□ -0.1
SF3B3-204ENST00000563739 CABP4P57796 275 aa14.39□□□□□ -0.11
SF3B3-204ENST00000563739 NFIXQ14938 502 aa14.39□□□□□ -0.11
SF3B3-204ENST00000563739 CDCA8Q53HL2 280 aa14.39□□□□□ -0.11
SF3B3-204ENST00000563739 USPL1Q5W0Q7 1092 aa14.39□□□□□ -0.11
SF3B3-204ENST00000563739 C16orf71Q8IYS4 520 aaPredicted RBP14.39□□□□□ -0.11
SF3B3-204ENST00000563739 NFATC2IPQ8NCF5 419 aa14.39□□□□□ -0.11
SF3B3-204ENST00000563739 BCORQ6W2J9 1755 aa14.39□□□□□ -0.11
SF3B3-204ENST00000563739 ADAMTSL1Q8N6G6 1762 aa14.39□□□□□ -0.11
SF3B3-204ENST00000563739 COL15A1P39059 1388 aa14.38□□□□□ -0.11
SF3B3-204ENST00000563739 GLTPD2A6NH11 291 aa14.38□□□□□ -0.11
SF3B3-204ENST00000563739 HSP90AB1P08238 724 aaKnown RBP14.38□□□□□ -0.11
SF3B3-204ENST00000563739 SLX4Q8IY92 1834 aa14.38□□□□□ -0.11
SF3B3-204ENST00000563739 CYP19A1P11511 503 aaPredicted RBP14.37□□□□□ -0.11
SF3B3-204ENST00000563739 PLEKHO1Q53GL0 409 aaPredicted RBP14.37□□□□□ -0.11
SF3B3-204ENST00000563739 ZBTB1Q9Y2K1 713 aa14.37□□□□□ -0.11
SF3B3-204ENST00000563739 POTEIP0CG38 1075 aa14.35□□□□□ -0.11
SF3B3-204ENST00000563739 POTEJP0CG39 1038 aa14.35□□□□□ -0.11
SF3B3-204ENST00000563739 LMNB1P20700 586 aa14.35□□□□□ -0.11
SF3B3-204ENST00000563739 MTHFSP49914 203 aa14.35□□□□□ -0.11
SF3B3-204ENST00000563739 AMOTQ4VCS5 1084 aa14.35□□□□□ -0.11
SF3B3-204ENST00000563739 LGR6Q9HBX8 967 aa14.35□□□□□ -0.11
SF3B3-204ENST00000563739 IL13P35225 146 aa14.34□□□□□ -0.11
SF3B3-204ENST00000563739 NARFQ9UHQ1 456 aa14.34□□□□□ -0.11
SF3B3-204ENST00000563739 VEGFAP15692 232 aaPredicted RBP14.33□□□□□ -0.12
SF3B3-204ENST00000563739 SLC39A6Q13433 755 aa14.33□□□□□ -0.12
SF3B3-204ENST00000563739 SLC52A2Q9HAB3 445 aa14.33□□□□□ -0.12
SF3B3-204ENST00000563739 SERPINB2P05120 415 aa14.32□□□□□ -0.12
SF3B3-204ENST00000563739 SULT6B1Q6IMI4 303 aa14.32□□□□□ -0.12
SF3B3-204ENST00000563739 THSD7BQ9C0I4 1608 aa14.31□□□□□ -0.12
SF3B3-204ENST00000563739 COL3A1P02461 1466 aaPredicted RBP14.31□□□□□ -0.12
SF3B3-204ENST00000563739 SCN4AP35499 1836 aa14.3□□□□□ -0.12
SF3B3-204ENST00000563739 C1orf141Q5JVX7 400 aa14.3□□□□□ -0.12
SF3B3-204ENST00000563739 C2CD5Q86YS7 1000 aa14.3□□□□□ -0.12
SF3B3-204ENST00000563739 TTLL6Q8N841 843 aa14.3□□□□□ -0.12
SF3B3-204ENST00000563739 FOXN1O15353 648 aa14.29□□□□□ -0.12
SF3B3-204ENST00000563739 RNMTO43148 476 aaKnown RBP14.29□□□□□ -0.12
SF3B3-204ENST00000563739 AKAP4Q5JQC9 854 aa14.29□□□□□ -0.12
SF3B3-204ENST00000563739 PASKQ96RG2 1323 aa14.29□□□□□ -0.12
SF3B3-204ENST00000563739 ZPR1O75312 459 aa14.28□□□□□ -0.12
SF3B3-204ENST00000563739 EIF5P55010 431 aaKnown RBP14.28□□□□□ -0.12
SF3B3-204ENST00000563739 CNTNAP1P78357 1384 aa14.28□□□□□ -0.12
SF3B3-204ENST00000563739 LTBP1Q14766 1721 aa14.28□□□□□ -0.12
SF3B3-204ENST00000563739 CCDC24Q8N4L8 307 aa14.28□□□□□ -0.12
SF3B3-204ENST00000563739 SNED1Q8TER0 1413 aa14.28□□□□□ -0.12
SF3B3-204ENST00000563739 PANK3Q9H999 370 aa14.28□□□□□ -0.12
SF3B3-204ENST00000563739 LTBP3Q9NS15 1303 aa14.28□□□□□ -0.12
SF3B3-204ENST00000563739 TBC1D9BQ66K14 1250 aa14.27□□□□□ -0.13
SF3B3-204ENST00000563739 PRR5LQ6MZQ0 368 aa14.27□□□□□ -0.13
SF3B3-204ENST00000563739 MKRN1Q9UHC7 482 aaKnown RBP14.27□□□□□ -0.13
SF3B3-204ENST00000563739 COL4A5P29400 1685 aa14.26□□□□□ -0.13
SF3B3-204ENST00000563739 CREBZFQ9NS37 354 aa14.26□□□□□ -0.13
SF3B3-204ENST00000563739 C21orf2O43822 256 aa14.25□□□□□ -0.13
SF3B3-204ENST00000563739 DDNO94850 711 aaPredicted RBP14.25□□□□□ -0.13
SF3B3-204ENST00000563739 MTHFSDQ2M296 383 aaKnown RBP14.25□□□□□ -0.13
SF3B3-204ENST00000563739 CHADLQ6NUI6 762 aa14.25□□□□□ -0.13
SF3B3-204ENST00000563739 VSIG10Q8N0Z9 540 aa14.25□□□□□ -0.13
SF3B3-204ENST00000563739 FAM161AQ3B820 660 aa14.24□□□□□ -0.13
SF3B3-204ENST00000563739 AMER1Q5JTC6 1135 aaPredicted RBP14.24□□□□□ -0.13
SF3B3-204ENST00000563739 ZNF219Q9P2Y4 722 aaPredicted RBP14.24□□□□□ -0.13
SF3B3-204ENST00000563739 H0YIN7 160 aa14.23□□□□□ -0.13
SF3B3-204ENST00000563739 CANXP27824 592 aaKnown RBP14.23□□□□□ -0.13
SF3B3-204ENST00000563739 BICDL1Q6ZP65 573 aa14.23□□□□□ -0.13
SF3B3-204ENST00000563739 C7orf43Q8WVR3 580 aa14.23□□□□□ -0.13
SF3B3-204ENST00000563739 POLR3GLQ9BT43 218 aa14.23□□□□□ -0.13
SF3B3-204ENST00000563739 HEG1Q9ULI3 1381 aa14.22□□□□□ -0.13
SF3B3-204ENST00000563739 ZNF541Q9H0D2 1346 aa14.22□□□□□ -0.13
SF3B3-204ENST00000563739 CAMTA2O94983 1202 aa14.22□□□□□ -0.13
SF3B3-204ENST00000563739 ITGBL1O95965 494 aaPredicted RBP14.22□□□□□ -0.13
SF3B3-204ENST00000563739 HMOX1P09601 288 aa14.22□□□□□ -0.13
SF3B3-204ENST00000563739 HSPA5P11021 654 aaKnown RBP14.22□□□□□ -0.13
SF3B3-204ENST00000563739 ERFEQ4G0M1 354 aa14.22□□□□□ -0.13
SF3B3-204ENST00000563739 ZNF496Q96IT1 587 aaPredicted RBP14.22□□□□□ -0.13
SF3B3-204ENST00000563739 L3MBTL3Q96JM7 780 aaPredicted RBP14.22□□□□□ -0.13
SF3B3-204ENST00000563739 BRIP1Q9BX63 1249 aa14.22□□□□□ -0.13
SF3B3-204ENST00000563739 MORC1Q86VD1 984 aa14.21□□□□□ -0.13
SF3B3-204ENST00000563739 SRGNP10124 158 aa14.2□□□□□ -0.14
SF3B3-204ENST00000563739 VEGFBP49765 207 aa14.2□□□□□ -0.14
SF3B3-204ENST00000563739 PRPF40BQ6NWY9 871 aaKnown RBP14.2□□□□□ -0.14
SF3B3-204ENST00000563739 TAOK3Q9H2K8 898 aa14.2□□□□□ -0.14
SF3B3-204ENST00000563739 TAF1DQ9H5J8 278 aaPredicted RBP14.2□□□□□ -0.14
SF3B3-204ENST00000563739 PRDM10Q9NQV6 1147 aa14.2□□□□□ -0.14
SF3B3-204ENST00000563739 OLFM4Q6UX06 510 aa14.19□□□□□ -0.14
SF3B3-204ENST00000563739 IL17REQ8NFR9 667 aa14.19□□□□□ -0.14
SF3B3-204ENST00000563739 ZNF622Q969S3 477 aaKnown RBP eCLIP14.19□□□□□ -0.14
SF3B3-204ENST00000563739 WBP1LQ9NX94 342 aa14.19□□□□□ -0.14
SF3B3-204ENST00000563739 TBC1D2BQ9UPU7 963 aa14.19□□□□□ -0.14
SF3B3-204ENST00000563739 CEMIPQ8WUJ3 1361 aa14.19□□□□□ -0.14
SF3B3-204ENST00000563739 SLC51AQ86UW1 340 aa14.18□□□□□ -0.14
SF3B3-204ENST00000563739 LAMB4A4D0S4 1761 aa14.17□□□□□ -0.14
SF3B3-204ENST00000563739 KCNQ3O43525 872 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms