RNA–Protein interactions for RNA: ENST00000563366.5

UBFD1-202, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 3

Gene UBFD1, Length 709 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-202ENST00000563366 C1orf141Q5JVX7 400 aa12.44□□□□□ -0.42
UBFD1-202ENST00000563366 MBIPQ9NS73 344 aa12.44□□□□□ -0.42
UBFD1-202ENST00000563366 COL5A2P05997 1499 aaPredicted RBP12.44□□□□□ -0.42
UBFD1-202ENST00000563366 CRB1P82279 1406 aa12.44□□□□□ -0.42
UBFD1-202ENST00000563366 SCN11AQ9UI33 1791 aa12.43□□□□□ -0.42
UBFD1-202ENST00000563366 WDR17Q8IZU2 1322 aa12.43□□□□□ -0.42
UBFD1-202ENST00000563366 FAM83GA6ND36 823 aa12.43□□□□□ -0.42
UBFD1-202ENST00000563366 CHL1O00533 1208 aa12.43□□□□□ -0.42
UBFD1-202ENST00000563366 TATP17735 454 aaPredicted RBP12.43□□□□□ -0.42
UBFD1-202ENST00000563366 MLLT3P42568 568 aaPredicted RBP12.43□□□□□ -0.42
UBFD1-202ENST00000563366 AKAP4Q5JQC9 854 aa12.43□□□□□ -0.42
UBFD1-202ENST00000563366 USHBP1Q8N6Y0 703 aa12.43□□□□□ -0.42
UBFD1-202ENST00000563366 UPF1Q92900 1129 aaKnown RBP eCLIP12.43□□□□□ -0.42
UBFD1-202ENST00000563366 CHMP4AQ9BY43 222 aa12.43□□□□□ -0.42
UBFD1-202ENST00000563366 SMC4Q9NTJ3 1288 aa12.43□□□□□ -0.42
UBFD1-202ENST00000563366 NLRP2Q9NX02 1062 aa12.43□□□□□ -0.42
UBFD1-202ENST00000563366 KDM3BQ7LBC6 1761 aa12.43□□□□□ -0.42
UBFD1-202ENST00000563366 PLCH1Q4KWH8 1693 aa12.42□□□□□ -0.42
UBFD1-202ENST00000563366 IPO8O15397 1037 aaKnown RBP12.42□□□□□ -0.42
UBFD1-202ENST00000563366 BCAR3O75815 825 aa12.42□□□□□ -0.42
UBFD1-202ENST00000563366 MCM10Q7L590 875 aa12.42□□□□□ -0.42
UBFD1-202ENST00000563366 CCDC136Q96JN2 1154 aa12.42□□□□□ -0.42
UBFD1-202ENST00000563366 THUMPD2Q9BTF0 503 aaKnown RBP12.42□□□□□ -0.42
UBFD1-202ENST00000563366 SPG7Q9UQ90 795 aa12.42□□□□□ -0.42
UBFD1-202ENST00000563366 SIPA1L3O60292 1781 aaPredicted RBP12.42□□□□□ -0.42
UBFD1-202ENST00000563366 CEMIPQ8WUJ3 1361 aa12.42□□□□□ -0.42
UBFD1-202ENST00000563366 PLIN1O60240 522 aa12.41□□□□□ -0.42
UBFD1-202ENST00000563366 BRPF1P55201 1214 aaPredicted RBP12.41□□□□□ -0.42
UBFD1-202ENST00000563366 DCTN1Q14203 1278 aa12.41□□□□□ -0.42
UBFD1-202ENST00000563366 CHRNA2Q15822 529 aa12.41□□□□□ -0.42
UBFD1-202ENST00000563366 TWISTNBQ3B726 338 aaPredicted RBP12.41□□□□□ -0.42
UBFD1-202ENST00000563366 ZKSCAN2Q63HK3 967 aa12.41□□□□□ -0.42
UBFD1-202ENST00000563366 ZNF530Q6P9A1 599 aaPredicted RBP12.41□□□□□ -0.42
UBFD1-202ENST00000563366 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.41□□□□□ -0.42
UBFD1-202ENST00000563366 NWD2Q9ULI1 1742 aa12.4□□□□□ -0.42
UBFD1-202ENST00000563366 ZC3H15Q8WU90 426 aaKnown RBP12.4□□□□□ -0.42
UBFD1-202ENST00000563366 FRAT1Q92837 279 aaPredicted RBP12.4□□□□□ -0.42
UBFD1-202ENST00000563366 TSPYL4Q9UJ04 414 aa12.4□□□□□ -0.42
UBFD1-202ENST00000563366 TAF7Q15545 349 aaPredicted RBP12.39□□□□□ -0.43
UBFD1-202ENST00000563366 FTSJ3Q8IY81 847 aaKnown RBP12.39□□□□□ -0.43
UBFD1-202ENST00000563366 WNK3Q9BYP7 1800 aa12.39□□□□□ -0.43
UBFD1-202ENST00000563366 MEGF6O75095 1541 aa12.38□□□□□ -0.43
UBFD1-202ENST00000563366 VAMP4O75379 141 aa12.38□□□□□ -0.43
UBFD1-202ENST00000563366 HSP90AB1P08238 724 aaKnown RBP12.38□□□□□ -0.43
UBFD1-202ENST00000563366 TEFQ10587 303 aa12.38□□□□□ -0.43
UBFD1-202ENST00000563366 TOM1L2Q6ZVM7 507 aa12.38□□□□□ -0.43
UBFD1-202ENST00000563366 EXOC6Q8TAG9 804 aa12.38□□□□□ -0.43
UBFD1-202ENST00000563366 OXER1Q8TDS5 423 aa12.38□□□□□ -0.43
UBFD1-202ENST00000563366 SSH1Q8WYL5 1049 aa12.38□□□□□ -0.43
UBFD1-202ENST00000563366 ARHGAP45Q92619 1136 aa12.38□□□□□ -0.43
UBFD1-202ENST00000563366 CRBNQ96SW2 442 aa12.38□□□□□ -0.43
UBFD1-202ENST00000563366 CARD10Q9BWT7 1032 aa12.38□□□□□ -0.43
UBFD1-202ENST00000563366 EVA1CP58658 441 aa12.37□□□□□ -0.43
UBFD1-202ENST00000563366 IL17REQ8NFR9 667 aa12.37□□□□□ -0.43
UBFD1-202ENST00000563366 CHMP4BQ9H444 224 aaKnown RBP12.37□□□□□ -0.43
UBFD1-202ENST00000563366 MRC1P22897 1456 aa12.36□□□□□ -0.43
UBFD1-202ENST00000563366 UBAP1LF5GYI3 381 aa12.36□□□□□ -0.43
UBFD1-202ENST00000563366 ATF7IPQ6VMQ6 1270 aa12.36□□□□□ -0.43
UBFD1-202ENST00000563366 DZIP1LQ8IYY4 767 aaKnown RBP12.36□□□□□ -0.43
UBFD1-202ENST00000563366 IFNL2Q8IZJ0 200 aa12.36□□□□□ -0.43
UBFD1-202ENST00000563366 BCL2L13Q9BXK5 485 aa12.36□□□□□ -0.43
UBFD1-202ENST00000563366 NRAPQ86VF7 1730 aa12.36□□□□□ -0.43
UBFD1-202ENST00000563366 PCDH11XQ9BZA7 1347 aa12.36□□□□□ -0.43
UBFD1-202ENST00000563366 PCDH11YQ9BZA8 1340 aa12.36□□□□□ -0.43
UBFD1-202ENST00000563366 TBC1D12O60347 775 aa12.35□□□□□ -0.43
UBFD1-202ENST00000563366 HOXB7P09629 217 aa12.35□□□□□ -0.43
UBFD1-202ENST00000563366 C20orf194Q5TEA3 1177 aa12.35□□□□□ -0.43
UBFD1-202ENST00000563366 B4GALNT3Q6L9W6 998 aa12.35□□□□□ -0.43
UBFD1-202ENST00000563366 SHANK3Q9BYB0 1731 aa12.34□□□□□ -0.43
UBFD1-202ENST00000563366 RNMTO43148 476 aaKnown RBP12.34□□□□□ -0.43
UBFD1-202ENST00000563366 IL2RBP14784 551 aa12.34□□□□□ -0.43
UBFD1-202ENST00000563366 PIP4K2BP78356 416 aa12.34□□□□□ -0.43
UBFD1-202ENST00000563366 RBM26Q5T8P6 1007 aaKnown RBP12.34□□□□□ -0.43
UBFD1-202ENST00000563366 C8orf58Q8NAV2 365 aa12.34□□□□□ -0.43
UBFD1-202ENST00000563366 DCAF5Q96JK2 942 aa12.34□□□□□ -0.43
UBFD1-202ENST00000563366 DDX19BQ9UMR2 479 aa12.34□□□□□ -0.43
UBFD1-202ENST00000563366 PTPRCP08575 1304 aa12.34□□□□□ -0.43
UBFD1-202ENST00000563366 N4BP2Q86UW6 1770 aaPredicted RBP12.33□□□□□ -0.44
UBFD1-202ENST00000563366 PHKG2P15735 406 aa12.33□□□□□ -0.44
UBFD1-202ENST00000563366 MVPQ14764 893 aaKnown RBP12.33□□□□□ -0.44
UBFD1-202ENST00000563366 GPIHBP1Q8IV16 184 aa12.33□□□□□ -0.44
UBFD1-202ENST00000563366 MRPL50Q8N5N7 158 aaKnown RBP12.33□□□□□ -0.44
UBFD1-202ENST00000563366 TSPYL6Q8N831 410 aa12.33□□□□□ -0.44
UBFD1-202ENST00000563366 STK31Q9BXU1 1019 aa12.33□□□□□ -0.44
UBFD1-202ENST00000563366 API5Q9BZZ5 524 aaKnown RBP12.33□□□□□ -0.44
UBFD1-202ENST00000563366 NOB1Q9ULX3 412 aaKnown RBP12.33□□□□□ -0.44
UBFD1-202ENST00000563366 JCADQ9P266 1359 aa12.32□□□□□ -0.44
UBFD1-202ENST00000563366 BTBD11A6QL63 1104 aa12.32□□□□□ -0.44
UBFD1-202ENST00000563366 ELL2O00472 640 aaPredicted RBP12.32□□□□□ -0.44
UBFD1-202ENST00000563366 TRIM27P14373 513 aa12.32□□□□□ -0.44
UBFD1-202ENST00000563366 CCDC30Q5VVM6 783 aa12.32□□□□□ -0.44
UBFD1-202ENST00000563366 CLUAP1Q96AJ1 413 aa12.32□□□□□ -0.44
UBFD1-202ENST00000563366 STRN4Q9NRL3 753 aa12.32□□□□□ -0.44
UBFD1-202ENST00000563366 BTG4Q9NY30 223 aa12.32□□□□□ -0.44
UBFD1-202ENST00000563366 GRXCR2A6NFK2 248 aa12.31□□□□□ -0.44
UBFD1-202ENST00000563366 MPRIPQ6WCQ1 1025 aa12.31□□□□□ -0.44
UBFD1-202ENST00000563366 ZCRB1Q8TBF4 217 aaKnown RBP12.31□□□□□ -0.44
UBFD1-202ENST00000563366 CERKQ8TCT0 537 aa12.31□□□□□ -0.44
UBFD1-202ENST00000563366 PANK1Q8TE04 598 aa12.31□□□□□ -0.44
UBFD1-202ENST00000563366 COG6Q9Y2V7 657 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms