RNA–Protein interactions for RNA: ENST00000560897.1

HERC1-210, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 5

Gene HERC1, Length 539 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-210ENST00000560897 DEFB115Q30KQ5 88 aa13.4□□□□□ -0.26
HERC1-210ENST00000560897 CARD11Q9BXL7 1154 aa13.4□□□□□ -0.26
HERC1-210ENST00000560897 GGNBP2Q9H3C7 697 aa13.4□□□□□ -0.26
HERC1-210ENST00000560897 MAPK8IP2Q13387 824 aaPredicted RBP13.39□□□□□ -0.27
HERC1-210ENST00000560897 C2CD5Q86YS7 1000 aa13.39□□□□□ -0.27
HERC1-210ENST00000560897 SLC4A9Q96Q91 983 aa13.39□□□□□ -0.27
HERC1-210ENST00000560897 ABT1Q9ULW3 272 aaKnown RBP13.39□□□□□ -0.27
HERC1-210ENST00000560897 WDR33Q9C0J8 1336 aaKnown RBP13.39□□□□□ -0.27
HERC1-210ENST00000560897 RASSF10A6NK89 507 aa13.38□□□□□ -0.27
HERC1-210ENST00000560897 H0YIN7 160 aa13.38□□□□□ -0.27
HERC1-210ENST00000560897 CRKLP46109 303 aaKnown RBP13.38□□□□□ -0.27
HERC1-210ENST00000560897 EAPPQ56P03 285 aaPredicted RBP13.38□□□□□ -0.27
HERC1-210ENST00000560897 PAXIP1Q6ZW49 1069 aaPredicted RBP13.38□□□□□ -0.27
HERC1-210ENST00000560897 CLEC11AQ9Y240 323 aa13.38□□□□□ -0.27
HERC1-210ENST00000560897 SCN4AP35499 1836 aa13.37□□□□□ -0.27
HERC1-210ENST00000560897 ERVV-2B6SEH9 535 aa13.37□□□□□ -0.27
HERC1-210ENST00000560897 DDNO94850 711 aaPredicted RBP13.37□□□□□ -0.27
HERC1-210ENST00000560897 HSP90AB1P08238 724 aaKnown RBP13.37□□□□□ -0.27
HERC1-210ENST00000560897 AFDNP55196 1824 aaKnown RBP13.36□□□□□ -0.27
HERC1-210ENST00000560897 PPM1GO15355 546 aaPredicted RBP13.36□□□□□ -0.27
HERC1-210ENST00000560897 TM4SF1P30408 202 aa13.36□□□□□ -0.27
HERC1-210ENST00000560897 CABP4P57796 275 aa13.36□□□□□ -0.27
HERC1-210ENST00000560897 TAOK3Q9H2K8 898 aa13.36□□□□□ -0.27
HERC1-210ENST00000560897 NCAPD2Q15021 1401 aa13.36□□□□□ -0.27
HERC1-210ENST00000560897 TONSLQ96HA7 1378 aa13.35□□□□□ -0.27
HERC1-210ENST00000560897 KIF20BQ96Q89 1820 aa13.35□□□□□ -0.27
HERC1-210ENST00000560897 FYB1O15117 783 aa13.35□□□□□ -0.27
HERC1-210ENST00000560897 PTCD1O75127 700 aaKnown RBP13.35□□□□□ -0.27
HERC1-210ENST00000560897 USPL1Q5W0Q7 1092 aa13.35□□□□□ -0.27
HERC1-210ENST00000560897 ZNF622Q969S3 477 aaKnown RBP eCLIP13.35□□□□□ -0.277e-7■■■□□ 14.8
HERC1-210ENST00000560897 TAF1DQ9H5J8 278 aaPredicted RBP13.35□□□□□ -0.27
HERC1-210ENST00000560897 ZNF219Q9P2Y4 722 aaPredicted RBP13.35□□□□□ -0.27
HERC1-210ENST00000560897 C21orf2O43822 256 aa13.34□□□□□ -0.27
HERC1-210ENST00000560897 ECE1P42892 770 aa13.34□□□□□ -0.27
HERC1-210ENST00000560897 FER1L6Q2WGJ9 1857 aa13.33□□□□□ -0.27
HERC1-210ENST00000560897 ITGBL1O95965 494 aaPredicted RBP13.33□□□□□ -0.28
HERC1-210ENST00000560897 SERPINB2P05120 415 aa13.33□□□□□ -0.28
HERC1-210ENST00000560897 GRM1Q13255 1194 aa13.33□□□□□ -0.28
HERC1-210ENST00000560897 NFIXQ14938 502 aa13.33□□□□□ -0.28
HERC1-210ENST00000560897 MCOLN1Q9GZU1 580 aa13.33□□□□□ -0.28
HERC1-210ENST00000560897 PDZRN3Q9UPQ7 1066 aa13.33□□□□□ -0.28
HERC1-210ENST00000560897 EMILIN1Q9Y6C2 1016 aa13.33□□□□□ -0.28
HERC1-210ENST00000560897 SLC24A1O60721 1099 aa13.32□□□□□ -0.28
HERC1-210ENST00000560897 L3MBTL3Q96JM7 780 aaPredicted RBP13.32□□□□□ -0.28
HERC1-210ENST00000560897 EYA1Q99502 592 aa13.32□□□□□ -0.28
HERC1-210ENST00000560897 NRXN2Q9P2S2 1712 aa13.32□□□□□ -0.28
HERC1-210ENST00000560897 LTBP3Q9NS15 1303 aa13.32□□□□□ -0.28
HERC1-210ENST00000560897 SOGA3Q5TF21 947 aa13.31□□□□□ -0.28
HERC1-210ENST00000560897 PNMA8AQ86V59 439 aaPredicted RBP13.31□□□□□ -0.28
HERC1-210ENST00000560897 CNTROBQ8N137 903 aa13.31□□□□□ -0.28
HERC1-210ENST00000560897 HACL1Q9UJ83 578 aa13.31□□□□□ -0.28
HERC1-210ENST00000560897 ANKRD26Q9UPS8 1709 aa13.3□□□□□ -0.28
HERC1-210ENST00000560897 PDE6BP35913 854 aa13.3□□□□□ -0.28
HERC1-210ENST00000560897 NEUROD1Q13562 356 aa13.3□□□□□ -0.28
HERC1-210ENST00000560897 CAPNS2Q96L46 248 aa13.3□□□□□ -0.28
HERC1-210ENST00000560897 GPR101Q96P66 508 aaPredicted RBP13.3□□□□□ -0.28
HERC1-210ENST00000560897 TSKSQ9UJT2 592 aa13.3□□□□□ -0.28
HERC1-210ENST00000560897 TJP1Q07157 1748 aa13.3□□□□□ -0.28
HERC1-210ENST00000560897 THSD7BQ9C0I4 1608 aa13.29□□□□□ -0.28
HERC1-210ENST00000560897 CA12O43570 354 aa13.29□□□□□ -0.28
HERC1-210ENST00000560897 EPHX2P34913 555 aa13.29□□□□□ -0.28
HERC1-210ENST00000560897 DGKZQ13574 1117 aa13.29□□□□□ -0.28
HERC1-210ENST00000560897 PRPF38BQ5VTL8 546 aaKnown RBP13.29□□□□□ -0.28
HERC1-210ENST00000560897 NARFQ9UHQ1 456 aa13.29□□□□□ -0.28
HERC1-210ENST00000560897 NPHP1O15259 732 aa13.28□□□□□ -0.28
HERC1-210ENST00000560897 PLEKHO1Q53GL0 409 aaPredicted RBP13.28□□□□□ -0.28
HERC1-210ENST00000560897 MAP1SQ66K74 1059 aaPredicted RBP13.28□□□□□ -0.28
HERC1-210ENST00000560897 INTS5Q6P9B9 1019 aaKnown RBP13.28□□□□□ -0.28
HERC1-210ENST00000560897 SOS1Q07889 1333 aaPredicted RBP13.28□□□□□ -0.28
HERC1-210ENST00000560897 COL15A1P39059 1388 aa13.28□□□□□ -0.28
HERC1-210ENST00000560897 CARMIL3Q8ND23 1372 aa13.28□□□□□ -0.28
HERC1-210ENST00000560897 ADAMTS7Q9UKP4 1686 aa13.28□□□□□ -0.28
HERC1-210ENST00000560897 CASP8AP2Q9UKL3 1982 aa13.27□□□□□ -0.28
HERC1-210ENST00000560897 ST20-MTHFSA0A0A6YYL1 179 aa13.27□□□□□ -0.29
HERC1-210ENST00000560897 MTHFSP49914 203 aa13.27□□□□□ -0.29
HERC1-210ENST00000560897 C1orf141Q5JVX7 400 aa13.27□□□□□ -0.29
HERC1-210ENST00000560897 ZNF530Q6P9A1 599 aaPredicted RBP13.27□□□□□ -0.29
HERC1-210ENST00000560897 BICDL1Q6ZP65 573 aa13.27□□□□□ -0.29
HERC1-210ENST00000560897 CNKSR1Q969H4 720 aa13.27□□□□□ -0.29
HERC1-210ENST00000560897 SIN3AQ96ST3 1273 aa13.27□□□□□ -0.29
HERC1-210ENST00000560897 WASHC2AQ641Q2 1341 aa13.27□□□□□ -0.29
HERC1-210ENST00000560897 CACNA1SQ13698 1873 aa13.27□□□□□ -0.29
HERC1-210ENST00000560897 CYP4F22Q6NT55 531 aa13.26□□□□□ -0.29
HERC1-210ENST00000560897 DDX21Q9NR30 783 aaKnown RBP eCLIP13.26□□□□□ -0.29
HERC1-210ENST00000560897 ADAMTSL1Q8N6G6 1762 aa13.25□□□□□ -0.29
HERC1-210ENST00000560897 MAP2K2P36507 400 aa13.25□□□□□ -0.29
HERC1-210ENST00000560897 AMOTQ4VCS5 1084 aa13.25□□□□□ -0.29
HERC1-210ENST00000560897 DNAJC10Q8IXB1 793 aa13.25□□□□□ -0.29
HERC1-210ENST00000560897 BRIP1Q9BX63 1249 aa13.25□□□□□ -0.29
HERC1-210ENST00000560897 TNRC18O15417 2968 aaPredicted RBP13.25□□□□□ -0.29
HERC1-210ENST00000560897 RNF123Q5XPI4 1314 aa13.24□□□□□ -0.29
HERC1-210ENST00000560897 NFATC2IPQ8NCF5 419 aa13.24□□□□□ -0.29
HERC1-210ENST00000560897 COL11A2P13942 1736 aaPredicted RBP13.24□□□□□ -0.29
HERC1-210ENST00000560897 LTBP1Q14766 1721 aa13.24□□□□□ -0.29
HERC1-210ENST00000560897 ANKRD31Q8N7Z5 1873 aa13.23□□□□□ -0.29
HERC1-210ENST00000560897 ZNF541Q9H0D2 1346 aa13.23□□□□□ -0.29
HERC1-210ENST00000560897 PRPF40BQ6NWY9 871 aaKnown RBP13.23□□□□□ -0.29
HERC1-210ENST00000560897 PPP4R3CPQ6ZMV5 832 aa13.23□□□□□ -0.29
HERC1-210ENST00000560897 LMOD1P29536 600 aaPredicted RBP13.22□□□□□ -0.29
HERC1-210ENST00000560897 SOX10P56693 466 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms