RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 BAG6P46379 1132 aa8.43□□□□□ -1.06
USP3-215ENST00000559771 GSK3AP49840 483 aa8.43□□□□□ -1.06
USP3-215ENST00000559771 LARP1Q6PKG0 1096 aaKnown RBP8.43□□□□□ -1.06
USP3-215ENST00000559771 CDCA7LQ96GN5 454 aa8.43□□□□□ -1.06
USP3-215ENST00000559771 DDX27Q96GQ7 796 aaKnown RBP8.43□□□□□ -1.06
USP3-215ENST00000559771 CAMKK2Q96RR4 588 aa8.43□□□□□ -1.06
USP3-215ENST00000559771 STRN4Q9NRL3 753 aa8.43□□□□□ -1.06
USP3-215ENST00000559771 SLIT3O75094 1523 aa8.43□□□□□ -1.06
USP3-215ENST00000559771 PIK3C2AO00443 1686 aa8.43□□□□□ -1.06
USP3-215ENST00000559771 NUP188Q5SRE5 1749 aa8.43□□□□□ -1.06
USP3-215ENST00000559771 PEAK1Q9H792 1746 aa8.43□□□□□ -1.06
USP3-215ENST00000559771 PARP4Q9UKK3 1724 aaKnown RBP8.43□□□□□ -1.06
USP3-215ENST00000559771 TLL1O43897 1013 aa8.42□□□□□ -1.06
USP3-215ENST00000559771 NKX1-1Q15270 411 aaPredicted RBP8.42□□□□□ -1.06
USP3-215ENST00000559771 EZH2Q15910 746 aaKnown RBP8.42□□□□□ -1.06
USP3-215ENST00000559771 BARGINQ6ZT62 677 aa8.42□□□□□ -1.06
USP3-215ENST00000559771 ABTB2Q8N961 1025 aa8.42□□□□□ -1.06
USP3-215ENST00000559771 KRTAP4-8Q9BYQ9 185 aa8.42□□□□□ -1.06
USP3-215ENST00000559771 CENPJQ9HC77 1338 aaPredicted RBP8.42□□□□□ -1.06
USP3-215ENST00000559771 COL5A2P05997 1499 aaPredicted RBP8.42□□□□□ -1.06
USP3-215ENST00000559771 AKAP12Q02952 1782 aa8.41□□□□□ -1.06
USP3-215ENST00000559771 USP6P35125 1406 aa8.41□□□□□ -1.06
USP3-215ENST00000559771 TRIM37O94972 964 aa8.41□□□□□ -1.06
USP3-215ENST00000559771 S1PR4O95977 384 aa8.41□□□□□ -1.06
USP3-215ENST00000559771 GCP02774 474 aa8.41□□□□□ -1.06
USP3-215ENST00000559771 L3MBTL2Q969R5 705 aa8.41□□□□□ -1.06
USP3-215ENST00000559771 USP35Q9P2H5 1018 aa8.41□□□□□ -1.06
USP3-215ENST00000559771 WNK3Q9BYP7 1800 aa8.4□□□□□ -1.06
USP3-215ENST00000559771 LRRC37A3O60309 1634 aa8.4□□□□□ -1.06
USP3-215ENST00000559771 RNF40O75150 1001 aa8.4□□□□□ -1.06
USP3-215ENST00000559771 GMPRP36959 345 aa8.4□□□□□ -1.06
USP3-215ENST00000559771 PRSS12P56730 875 aa8.4□□□□□ -1.06
USP3-215ENST00000559771 SRPK2P78362 688 aaKnown RBP8.4□□□□□ -1.06
USP3-215ENST00000559771 R3HDM1Q15032 1099 aaKnown RBP8.4□□□□□ -1.06
USP3-215ENST00000559771 CTC1Q2NKJ3 1217 aa8.4□□□□□ -1.06
USP3-215ENST00000559771 FAM196AQ6ZSG2 479 aa8.4□□□□□ -1.06
USP3-215ENST00000559771 CABP1Q9NZU7 370 aa8.4□□□□□ -1.06
USP3-215ENST00000559771 SBF2Q86WG5 1849 aa8.4□□□□□ -1.07
USP3-215ENST00000559771 RGPD5Q99666 1765 aa8.4□□□□□ -1.07
USP3-215ENST00000559771 NLRP13Q86W25 1043 aa8.39□□□□□ -1.07
USP3-215ENST00000559771 TCP11L2Q8N4U5 519 aa8.39□□□□□ -1.07
USP3-215ENST00000559771 SIN3AQ96ST3 1273 aa8.39□□□□□ -1.07
USP3-215ENST00000559771 BRD4O60885 1362 aaPredicted RBP8.38□□□□□ -1.07
USP3-215ENST00000559771 AATKQ6ZMQ8 1374 aa8.38□□□□□ -1.07
USP3-215ENST00000559771 EVA1CP58658 441 aa8.38□□□□□ -1.07
USP3-215ENST00000559771 FOXC1Q12948 553 aa8.38□□□□□ -1.07
USP3-215ENST00000559771 BLOC1S3Q6QNY0 202 aa8.38□□□□□ -1.07
USP3-215ENST00000559771 HS6ST3Q8IZP7 471 aa8.38□□□□□ -1.07
USP3-215ENST00000559771 KCTD17Q8N5Z5 321 aa8.38□□□□□ -1.07
USP3-215ENST00000559771 PNMA3Q9UL41 463 aa8.38□□□□□ -1.07
USP3-215ENST00000559771 CRB1P82279 1406 aa8.37□□□□□ -1.07
USP3-215ENST00000559771 PARD3Q8TEW0 1356 aa8.37□□□□□ -1.07
USP3-215ENST00000559771 APBA3O96018 575 aa8.37□□□□□ -1.07
USP3-215ENST00000559771 PTF1AQ7RTS3 328 aa8.37□□□□□ -1.07
USP3-215ENST00000559771 THRAP3Q9Y2W1 955 aaKnown RBP8.37□□□□□ -1.07
USP3-215ENST00000559771 NFAT5O94916 1531 aa8.37□□□□□ -1.07
USP3-215ENST00000559771 RGPD3A6NKT7 1758 aaPredicted RBP8.37□□□□□ -1.07
USP3-215ENST00000559771 RGPD4Q7Z3J3 1758 aa8.37□□□□□ -1.07
USP3-215ENST00000559771 MON2Q7Z3U7 1717 aa8.37□□□□□ -1.07
USP3-215ENST00000559771 CPSF1Q10570 1443 aaKnown RBP8.37□□□□□ -1.07
USP3-215ENST00000559771 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.36□□□□□ -1.07
USP3-215ENST00000559771 PDE3BQ13370 1112 aa8.36□□□□□ -1.07
USP3-215ENST00000559771 DDX12PQ92771 950 aa8.36□□□□□ -1.07
USP3-215ENST00000559771 TRIM47Q96LD4 638 aa8.36□□□□□ -1.07
USP3-215ENST00000559771 ATP13A2Q9NQ11 1180 aa8.36□□□□□ -1.07
USP3-215ENST00000559771 CD163L1Q9NR16 1453 aa8.36□□□□□ -1.07
USP3-215ENST00000559771 USP54Q70EL1 1684 aa8.36□□□□□ -1.07
USP3-215ENST00000559771 TTC21BQ7Z4L5 1316 aa8.35□□□□□ -1.07
USP3-215ENST00000559771 XP32Q5T750 250 aa8.35□□□□□ -1.07
USP3-215ENST00000559771 ARHGEF25Q86VW2 580 aa8.35□□□□□ -1.07
USP3-215ENST00000559771 EVC2Q86UK5 1308 aa8.34□□□□□ -1.07
USP3-215ENST00000559771 SWT1Q5T5J6 900 aaKnown RBP8.34□□□□□ -1.07
USP3-215ENST00000559771 NUDT18Q6ZVK8 323 aa8.34□□□□□ -1.07
USP3-215ENST00000559771 MARCH10Q8NA82 808 aaPredicted RBP8.34□□□□□ -1.07
USP3-215ENST00000559771 CASZ1Q86V15 1759 aa8.34□□□□□ -1.07
USP3-215ENST00000559771 OVOS2A0A0G2JMS6 1433 aa8.34□□□□□ -1.07
USP3-215ENST00000559771 OVOS2A0A0J9YW53 1432 aa8.34□□□□□ -1.07
USP3-215ENST00000559771 OVOS2Q6IE36 1432 aa8.34□□□□□ -1.07
USP3-215ENST00000559771 ROCK2O75116 1388 aaKnown RBP8.34□□□□□ -1.07
USP3-215ENST00000559771 WDR17Q8IZU2 1322 aa8.33□□□□□ -1.08
USP3-215ENST00000559771 ZBTB7CA1YPR0 619 aa8.33□□□□□ -1.08
USP3-215ENST00000559771 BCL9O00512 1426 aa8.33□□□□□ -1.08
USP3-215ENST00000559771 PCDHB3Q9Y5E6 796 aa8.33□□□□□ -1.08
USP3-215ENST00000559771 SBNO2Q9Y2G9 1366 aa8.33□□□□□ -1.08
USP3-215ENST00000559771 NBPF26B4DH59 902 aa8.32□□□□□ -1.08
USP3-215ENST00000559771 PLSCR1O15162 318 aa8.32□□□□□ -1.08
USP3-215ENST00000559771 NEUROD1Q13562 356 aa8.32□□□□□ -1.08
USP3-215ENST00000559771 TOM1L2Q6ZVM7 507 aa8.32□□□□□ -1.08
USP3-215ENST00000559771 ABCC6O95255 1503 aa8.32□□□□□ -1.08
USP3-215ENST00000559771 LTN1O94822 1766 aa8.32□□□□□ -1.08
USP3-215ENST00000559771 TTC21AQ8NDW8 1320 aa8.31□□□□□ -1.08
USP3-215ENST00000559771 PRIM1P49642 420 aaKnown RBP8.31□□□□□ -1.08
USP3-215ENST00000559771 DDB1Q16531 1140 aa8.31□□□□□ -1.08
USP3-215ENST00000559771 KRTAP9-2Q9BYQ4 174 aa8.31□□□□□ -1.08
USP3-215ENST00000559771 PDGFDQ9GZP0 370 aaPredicted RBP8.31□□□□□ -1.08
USP3-215ENST00000559771 USP31Q70CQ4 1352 aa8.31□□□□□ -1.08
USP3-215ENST00000559771 KTN1Q86UP2 1357 aaKnown RBP8.31□□□□□ -1.08
USP3-215ENST00000559771 MAP3K7O43318 606 aa8.3□□□□□ -1.08
USP3-215ENST00000559771 KCNH5Q8NCM2 988 aa8.3□□□□□ -1.08
USP3-215ENST00000559771 CARD10Q9BWT7 1032 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms