RNA–Protein interactions for RNA: ENST00000559460.5

SMAD3-211, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-211ENST00000559460 DDNO94850 711 aaPredicted RBP13.56□□□□□ -0.24
SMAD3-211ENST00000559460 HSP90AB1P08238 724 aaKnown RBP13.56□□□□□ -0.24
SMAD3-211ENST00000559460 EAPPQ56P03 285 aaPredicted RBP13.56□□□□□ -0.24
SMAD3-211ENST00000559460 C2CD5Q86YS7 1000 aa13.56□□□□□ -0.24
SMAD3-211ENST00000559460 SLC4A9Q96Q91 983 aa13.56□□□□□ -0.24
SMAD3-211ENST00000559460 WDR33Q9C0J8 1336 aaKnown RBP13.56□□□□□ -0.24
SMAD3-211ENST00000559460 COL5A3P25940 1745 aaPredicted RBP13.56□□□□□ -0.24
SMAD3-211ENST00000559460 ERVV-2B6SEH9 535 aa13.55□□□□□ -0.24
SMAD3-211ENST00000559460 PTCD1O75127 700 aaKnown RBP13.55□□□□□ -0.24
SMAD3-211ENST00000559460 CABP4P57796 275 aa13.55□□□□□ -0.24
SMAD3-211ENST00000559460 ZNF219Q9P2Y4 722 aaPredicted RBP13.55□□□□□ -0.24
SMAD3-211ENST00000559460 RASSF10A6NK89 507 aa13.54□□□□□ -0.24
SMAD3-211ENST00000559460 USPL1Q5W0Q7 1092 aa13.54□□□□□ -0.24
SMAD3-211ENST00000559460 VIRMAQ69YN4 1812 aaKnown RBP13.53□□□□□ -0.24
SMAD3-211ENST00000559460 FYB1O15117 783 aa13.53□□□□□ -0.24
SMAD3-211ENST00000559460 TM4SF1P30408 202 aa13.53□□□□□ -0.24
SMAD3-211ENST00000559460 ECE1P42892 770 aa13.53□□□□□ -0.24
SMAD3-211ENST00000559460 GRM1Q13255 1194 aa13.53□□□□□ -0.24
SMAD3-211ENST00000559460 ZNF622Q969S3 477 aaKnown RBP eCLIP13.53□□□□□ -0.24
SMAD3-211ENST00000559460 TAOK3Q9H2K8 898 aa13.53□□□□□ -0.24
SMAD3-211ENST00000559460 CCDC88AQ3V6T2 1871 aa13.53□□□□□ -0.24
SMAD3-211ENST00000559460 C21orf2O43822 256 aa13.52□□□□□ -0.25
SMAD3-211ENST00000559460 SLC24A1O60721 1099 aa13.52□□□□□ -0.25
SMAD3-211ENST00000559460 SERPINB2P05120 415 aa13.52□□□□□ -0.25
SMAD3-211ENST00000559460 TAF1DQ9H5J8 278 aaPredicted RBP13.52□□□□□ -0.25
SMAD3-211ENST00000559460 TONSLQ96HA7 1378 aa13.52□□□□□ -0.25
SMAD3-211ENST00000559460 DLEC1Q9Y238 1755 aa13.51□□□□□ -0.25
SMAD3-211ENST00000559460 NCAPD2Q15021 1401 aa13.51□□□□□ -0.25
SMAD3-211ENST00000559460 PDZRN3Q9UPQ7 1066 aa13.51□□□□□ -0.25
SMAD3-211ENST00000559460 EMILIN1Q9Y6C2 1016 aa13.51□□□□□ -0.25
SMAD3-211ENST00000559460 ITGBL1O95965 494 aaPredicted RBP13.5□□□□□ -0.25
SMAD3-211ENST00000559460 NEUROD1Q13562 356 aa13.5□□□□□ -0.25
SMAD3-211ENST00000559460 NFIXQ14938 502 aa13.5□□□□□ -0.25
SMAD3-211ENST00000559460 MCOLN1Q9GZU1 580 aa13.5□□□□□ -0.25
SMAD3-211ENST00000559460 LTBP3Q9NS15 1303 aa13.49□□□□□ -0.25
SMAD3-211ENST00000559460 NPHP1O15259 732 aa13.49□□□□□ -0.25
SMAD3-211ENST00000559460 SOGA3Q5TF21 947 aa13.49□□□□□ -0.25
SMAD3-211ENST00000559460 PNMA8AQ86V59 439 aaPredicted RBP13.49□□□□□ -0.25
SMAD3-211ENST00000559460 L3MBTL3Q96JM7 780 aaPredicted RBP13.49□□□□□ -0.25
SMAD3-211ENST00000559460 EYA1Q99502 592 aa13.49□□□□□ -0.25
SMAD3-211ENST00000559460 HACL1Q9UJ83 578 aa13.49□□□□□ -0.25
SMAD3-211ENST00000559460 PDE6BP35913 854 aa13.48□□□□□ -0.25
SMAD3-211ENST00000559460 CNTROBQ8N137 903 aa13.48□□□□□ -0.25
SMAD3-211ENST00000559460 CAPNS2Q96L46 248 aa13.48□□□□□ -0.25
SMAD3-211ENST00000559460 CA12O43570 354 aa13.47□□□□□ -0.25
SMAD3-211ENST00000559460 EPHX2P34913 555 aa13.47□□□□□ -0.25
SMAD3-211ENST00000559460 DGKZQ13574 1117 aa13.47□□□□□ -0.25
SMAD3-211ENST00000559460 MAP1SQ66K74 1059 aaPredicted RBP13.47□□□□□ -0.25
SMAD3-211ENST00000559460 GPR101Q96P66 508 aaPredicted RBP13.47□□□□□ -0.25
SMAD3-211ENST00000559460 TSKSQ9UJT2 592 aa13.47□□□□□ -0.25
SMAD3-211ENST00000559460 SCN4AP35499 1836 aa13.47□□□□□ -0.25
SMAD3-211ENST00000559460 MYH14Q7Z406 1995 aaKnown RBP13.47□□□□□ -0.25
SMAD3-211ENST00000559460 DICER1Q9UPY3 1922 aaKnown RBP13.47□□□□□ -0.25
SMAD3-211ENST00000559460 PLEKHO1Q53GL0 409 aaPredicted RBP13.46□□□□□ -0.25
SMAD3-211ENST00000559460 C1orf141Q5JVX7 400 aa13.46□□□□□ -0.25
SMAD3-211ENST00000559460 PRPF38BQ5VTL8 546 aaKnown RBP13.46□□□□□ -0.25
SMAD3-211ENST00000559460 ZNF530Q6P9A1 599 aaPredicted RBP13.46□□□□□ -0.25
SMAD3-211ENST00000559460 BICDL1Q6ZP65 573 aa13.46□□□□□ -0.25
SMAD3-211ENST00000559460 NARFQ9UHQ1 456 aa13.46□□□□□ -0.25
SMAD3-211ENST00000559460 KIF20BQ96Q89 1820 aa13.46□□□□□ -0.26
SMAD3-211ENST00000559460 COL15A1P39059 1388 aa13.45□□□□□ -0.26
SMAD3-211ENST00000559460 ST20-MTHFSA0A0A6YYL1 179 aa13.45□□□□□ -0.26
SMAD3-211ENST00000559460 MTHFSP49914 203 aa13.45□□□□□ -0.26
SMAD3-211ENST00000559460 INTS5Q6P9B9 1019 aaKnown RBP13.45□□□□□ -0.26
SMAD3-211ENST00000559460 CNKSR1Q969H4 720 aa13.45□□□□□ -0.26
SMAD3-211ENST00000559460 SIN3AQ96ST3 1273 aa13.45□□□□□ -0.26
SMAD3-211ENST00000559460 AFDNP55196 1824 aaKnown RBP13.45□□□□□ -0.26
SMAD3-211ENST00000559460 CARMIL3Q8ND23 1372 aa13.45□□□□□ -0.26
SMAD3-211ENST00000559460 NRXN2Q9P2S2 1712 aa13.44□□□□□ -0.26
SMAD3-211ENST00000559460 SOS1Q07889 1333 aaPredicted RBP13.44□□□□□ -0.26
SMAD3-211ENST00000559460 WASHC2AQ641Q2 1341 aa13.44□□□□□ -0.26
SMAD3-211ENST00000559460 CYP4F22Q6NT55 531 aa13.44□□□□□ -0.26
SMAD3-211ENST00000559460 DDX21Q9NR30 783 aaKnown RBP eCLIP13.44□□□□□ -0.26
SMAD3-211ENST00000559460 ANKRD26Q9UPS8 1709 aa13.44□□□□□ -0.26
SMAD3-211ENST00000559460 AMOTQ4VCS5 1084 aa13.43□□□□□ -0.26
SMAD3-211ENST00000559460 NFATC2IPQ8NCF5 419 aa13.43□□□□□ -0.26
SMAD3-211ENST00000559460 BRIP1Q9BX63 1249 aa13.43□□□□□ -0.26
SMAD3-211ENST00000559460 THSD7BQ9C0I4 1608 aa13.42□□□□□ -0.26
SMAD3-211ENST00000559460 FER1L6Q2WGJ9 1857 aa13.42□□□□□ -0.26
SMAD3-211ENST00000559460 TJP1Q07157 1748 aa13.42□□□□□ -0.26
SMAD3-211ENST00000559460 MAP2K2P36507 400 aa13.42□□□□□ -0.26
SMAD3-211ENST00000559460 DNAJC10Q8IXB1 793 aa13.42□□□□□ -0.26
SMAD3-211ENST00000559460 RNF123Q5XPI4 1314 aa13.41□□□□□ -0.26
SMAD3-211ENST00000559460 LMOD1P29536 600 aaPredicted RBP13.41□□□□□ -0.26
SMAD3-211ENST00000559460 CCDC93Q567U6 631 aa13.41□□□□□ -0.26
SMAD3-211ENST00000559460 PRPF40BQ6NWY9 871 aaKnown RBP13.41□□□□□ -0.26
SMAD3-211ENST00000559460 SOX10P56693 466 aa13.4□□□□□ -0.26
SMAD3-211ENST00000559460 ST5P78524 1137 aa13.4□□□□□ -0.26
SMAD3-211ENST00000559460 ADAMTS7Q9UKP4 1686 aa13.4□□□□□ -0.26
SMAD3-211ENST00000559460 ZNF541Q9H0D2 1346 aa13.39□□□□□ -0.27
SMAD3-211ENST00000559460 A0A087WZG4 1122 aa13.39□□□□□ -0.27
SMAD3-211ENST00000559460 STYK1Q6J9G0 422 aa13.39□□□□□ -0.27
SMAD3-211ENST00000559460 NPM2Q86SE8 214 aaKnown RBP13.39□□□□□ -0.27
SMAD3-211ENST00000559460 GCC1Q96CN9 775 aa13.39□□□□□ -0.27
SMAD3-211ENST00000559460 TESK2Q96S53 571 aa13.39□□□□□ -0.27
SMAD3-211ENST00000559460 AOC2O75106 756 aa13.38□□□□□ -0.27
SMAD3-211ENST00000559460 CYP19A1P11511 503 aaPredicted RBP13.38□□□□□ -0.27
SMAD3-211ENST00000559460 FKBP4Q02790 459 aaKnown RBP eCLIP13.38□□□□□ -0.27
SMAD3-211ENST00000559460 EIF4A2Q14240 407 aaKnown RBP13.38□□□□□ -0.27
SMAD3-211ENST00000559460 CNBD1Q8NA66 436 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms