RNA–Protein interactions for RNA: ENST00000559433.5

LRRC28-214, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 1,045 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-214ENST00000559433 GYS1P13807 737 aa16.68■□□□□ 0.26
LRRC28-214ENST00000559433 FMNL2Q96PY5 1086 aa16.68■□□□□ 0.26
LRRC28-214ENST00000559433 SOS1Q07889 1333 aaPredicted RBP16.68■□□□□ 0.26
LRRC28-214ENST00000559433 GRIN3BO60391 1043 aa16.67■□□□□ 0.26
LRRC28-214ENST00000559433 STARD3NLO95772 234 aa16.67■□□□□ 0.26
LRRC28-214ENST00000559433 SRP68Q9UHB9 627 aaKnown RBP16.67■□□□□ 0.26
LRRC28-214ENST00000559433 ZBTB1Q9Y2K1 713 aa16.67■□□□□ 0.26
LRRC28-214ENST00000559433 USP42Q9H9J4 1324 aaKnown RBP16.67■□□□□ 0.26
LRRC28-214ENST00000559433 KDM3BQ7LBC6 1761 aa16.66■□□□□ 0.26
LRRC28-214ENST00000559433 COL15A1P39059 1388 aa16.66■□□□□ 0.26
LRRC28-214ENST00000559433 UTRNP46939 3433 aa16.66■□□□□ 0.26
LRRC28-214ENST00000559433 KCNQ3O43525 872 aa16.66■□□□□ 0.26
LRRC28-214ENST00000559433 ZPR1O75312 459 aa16.66■□□□□ 0.26
LRRC28-214ENST00000559433 NFE2L2Q16236 605 aa16.66■□□□□ 0.26
LRRC28-214ENST00000559433 PRKRIP1Q9H875 184 aaPredicted RBP16.66■□□□□ 0.26
LRRC28-214ENST00000559433 CANXP27824 592 aaKnown RBP16.65■□□□□ 0.26
LRRC28-214ENST00000559433 NPM2Q86SE8 214 aaKnown RBP16.65■□□□□ 0.26
LRRC28-214ENST00000559433 TEX13AQ9BXU3 409 aaPredicted RBP16.65■□□□□ 0.26
LRRC28-214ENST00000559433 PARP3Q9Y6F1 533 aa16.65■□□□□ 0.26
LRRC28-214ENST00000559433 GOLGB1Q14789 3259 aaKnown RBP16.65■□□□□ 0.26
LRRC28-214ENST00000559433 LAMB4A4D0S4 1761 aa16.64■□□□□ 0.25
LRRC28-214ENST00000559433 N4BP2Q86UW6 1770 aaPredicted RBP16.64■□□□□ 0.25
LRRC28-214ENST00000559433 SCN7AQ01118 1682 aa16.63■□□□□ 0.25
LRRC28-214ENST00000559433 KIAA1551Q9HCM1 1747 aa16.63■□□□□ 0.25
LRRC28-214ENST00000559433 FKBP8Q14318 412 aa16.63■□□□□ 0.25
LRRC28-214ENST00000559433 WDR43Q15061 677 aaKnown RBP eCLIP16.63■□□□□ 0.25
LRRC28-214ENST00000559433 USPL1Q5W0Q7 1092 aa16.63■□□□□ 0.25
LRRC28-214ENST00000559433 TAF7Q15545 349 aaPredicted RBP16.62■□□□□ 0.25
LRRC28-214ENST00000559433 C10orf71Q711Q0 1435 aa16.62■□□□□ 0.25
LRRC28-214ENST00000559433 THUMPD2Q9BTF0 503 aaKnown RBP16.61■□□□□ 0.25
LRRC28-214ENST00000559433 NARFQ9UHQ1 456 aa16.61■□□□□ 0.25
LRRC28-214ENST00000559433 ZNF330Q9Y3S2 320 aaPredicted RBP16.61■□□□□ 0.25
LRRC28-214ENST00000559433 AFDNP55196 1824 aaKnown RBP16.61■□□□□ 0.25
LRRC28-214ENST00000559433 A0A087WZG4 1122 aa16.6■□□□□ 0.25
LRRC28-214ENST00000559433 ZNF316A6NFI3 1004 aaPredicted RBP16.6■□□□□ 0.25
LRRC28-214ENST00000559433 A1BGP04217 495 aa16.6■□□□□ 0.25
LRRC28-214ENST00000559433 SNRPA1P09661 255 aaKnown RBP16.6■□□□□ 0.25
LRRC28-214ENST00000559433 YBX3P16989 372 aaKnown RBP eCLIP16.6■□□□□ 0.251e-6■■■□□ 17.7
LRRC28-214ENST00000559433 EIF5P55010 431 aaKnown RBP16.6■□□□□ 0.25
LRRC28-214ENST00000559433 CCDC146Q8IYE0 955 aa16.6■□□□□ 0.25
LRRC28-214ENST00000559433 PNISRQ8TF01 805 aaKnown RBP16.6■□□□□ 0.25
LRRC28-214ENST00000559433 MIS18AQ9NYP9 233 aa16.6■□□□□ 0.25
LRRC28-214ENST00000559433 BCORQ6W2J9 1755 aa16.59■□□□□ 0.25
LRRC28-214ENST00000559433 PRAMEF22A3QJZ6 481 aa16.59■□□□□ 0.25
LRRC28-214ENST00000559433 RIPK4P57078 832 aa16.59■□□□□ 0.25
LRRC28-214ENST00000559433 DDR1Q08345 913 aa16.59■□□□□ 0.25
LRRC28-214ENST00000559433 PXDNLA1KZ92 1463 aa16.59■□□□□ 0.25
LRRC28-214ENST00000559433 IL6STP40189 918 aaPredicted RBP16.58■□□□□ 0.24
LRRC28-214ENST00000559433 TGFB2P61812 414 aa16.58■□□□□ 0.24
LRRC28-214ENST00000559433 WWC3Q9ULE0 1092 aa16.58■□□□□ 0.24
LRRC28-214ENST00000559433 USP16Q9Y5T5 823 aa16.58■□□□□ 0.24
LRRC28-214ENST00000559433 BRCA1P38398 1863 aaKnown RBP16.58■□□□□ 0.24
LRRC28-214ENST00000559433 NRXN2Q9P2S2 1712 aa16.57■□□□□ 0.24
LRRC28-214ENST00000559433 POLRMTO00411 1230 aaKnown RBP16.57■□□□□ 0.24
LRRC28-214ENST00000559433 TM4SF1P30408 202 aa16.57■□□□□ 0.24
LRRC28-214ENST00000559433 TMPOP42166 694 aaKnown RBP16.57■□□□□ 0.24
LRRC28-214ENST00000559433 LMOD3Q0VAK6 560 aa16.57■□□□□ 0.24
LRRC28-214ENST00000559433 MAPK8IP2Q13387 824 aaPredicted RBP16.57■□□□□ 0.24
LRRC28-214ENST00000559433 RUNDC1Q96C34 613 aa16.57■□□□□ 0.24
LRRC28-214ENST00000559433 ADAMTS8Q9UP79 889 aa16.57■□□□□ 0.24
LRRC28-214ENST00000559433 PIP4K2AP48426 406 aaPredicted RBP16.56■□□□□ 0.24
LRRC28-214ENST00000559433 BCL2L12Q9HB09 334 aa16.56■□□□□ 0.24
LRRC28-214ENST00000559433 RRP7AQ9Y3A4 280 aaKnown RBP16.56■□□□□ 0.24
LRRC28-214ENST00000559433 A0A0G2JLW4 131 aa16.55■□□□□ 0.24
LRRC28-214ENST00000559433 NFIXQ14938 502 aa16.55■□□□□ 0.24
LRRC28-214ENST00000559433 NEUROD2Q15784 382 aa16.55■□□□□ 0.24
LRRC28-214ENST00000559433 TBC1D2BQ9UPU7 963 aa16.55■□□□□ 0.24
LRRC28-214ENST00000559433 ZNF784Q8NCA9 323 aaPredicted RBP16.54■□□□□ 0.24
LRRC28-214ENST00000559433 TSPYL4Q9UJ04 414 aa16.54■□□□□ 0.24
LRRC28-214ENST00000559433 DPEP1P16444 411 aa16.53■□□□□ 0.24
LRRC28-214ENST00000559433 EIF4A1P60842 406 aaKnown RBP16.53■□□□□ 0.24
LRRC28-214ENST00000559433 BICDL1Q6ZP65 573 aa16.53■□□□□ 0.24
LRRC28-214ENST00000559433 BCS1LQ9Y276 419 aa16.53■□□□□ 0.24
LRRC28-214ENST00000559433 DLEC1Q9Y238 1755 aa16.52■□□□□ 0.24
LRRC28-214ENST00000559433 DZIP3Q86Y13 1208 aaKnown RBP16.52■□□□□ 0.24
LRRC28-214ENST00000559433 ARFGEF1Q9Y6D6 1849 aa16.52■□□□□ 0.23
LRRC28-214ENST00000559433 NBPF26B4DH59 902 aa16.51■□□□□ 0.23
LRRC28-214ENST00000559433 GIGYF1O75420 1035 aaPredicted RBP16.51■□□□□ 0.23
LRRC28-214ENST00000559433 CAMTA2O94983 1202 aa16.51■□□□□ 0.23
LRRC28-214ENST00000559433 SERPINB2P05120 415 aa16.51■□□□□ 0.23
LRRC28-214ENST00000559433 TBC1D9BQ66K14 1250 aa16.51■□□□□ 0.23
LRRC28-214ENST00000559433 NBPF10Q6P3W6 841 aaKnown RBP16.51■□□□□ 0.23
LRRC28-214ENST00000559433 NBPF15Q8N660 670 aa16.51■□□□□ 0.23
LRRC28-214ENST00000559433 NPHP1O15259 732 aa16.5■□□□□ 0.23
LRRC28-214ENST00000559433 PIM2Q9P1W9 311 aa16.5■□□□□ 0.23
LRRC28-214ENST00000559433 ANKRD31Q8N7Z5 1873 aa16.5■□□□□ 0.23
LRRC28-214ENST00000559433 CARMIL3Q8ND23 1372 aa16.5■□□□□ 0.23
LRRC28-214ENST00000559433 ANP32CO43423 234 aa16.49■□□□□ 0.23
LRRC28-214ENST00000559433 ARHGAP27Q6ZUM4 889 aa16.49■□□□□ 0.23
LRRC28-214ENST00000559433 BABAM1Q9NWV8 329 aa16.49■□□□□ 0.23
LRRC28-214ENST00000559433 TRIM35Q9UPQ4 493 aa16.49■□□□□ 0.23
LRRC28-214ENST00000559433 CHRNA5P30532 468 aa16.48■□□□□ 0.23
LRRC28-214ENST00000559433 ZNF652Q9Y2D9 606 aa16.48■□□□□ 0.23
LRRC28-214ENST00000559433 LAS1LQ9Y4W2 734 aaKnown RBP16.48■□□□□ 0.23
LRRC28-214ENST00000559433 NUP98P52948 1817 aa16.47■□□□□ 0.23
LRRC28-214ENST00000559433 KCNA3P22001 575 aa16.47■□□□□ 0.23
LRRC28-214ENST00000559433 CCDC184Q52MB2 194 aa16.47■□□□□ 0.23
LRRC28-214ENST00000559433 DALRD3Q5D0E6 543 aaKnown RBP16.47■□□□□ 0.23
LRRC28-214ENST00000559433 SETDB2Q96T68 719 aa16.47■□□□□ 0.23
LRRC28-214ENST00000559433 COL11A2P13942 1736 aaPredicted RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms