RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 RTF1Q92541 710 aaKnown RBP14.54□□□□□ -0.08
SPG11-216ENST00000559347 PRKRIP1Q9H875 184 aaPredicted RBP14.54□□□□□ -0.08
SPG11-216ENST00000559347 ZBTB1Q9Y2K1 713 aa14.54□□□□□ -0.08
SPG11-216ENST00000559347 SOS1Q07889 1333 aaPredicted RBP14.54□□□□□ -0.08
SPG11-216ENST00000559347 USP42Q9H9J4 1324 aaKnown RBP14.54□□□□□ -0.08
SPG11-216ENST00000559347 C10orf71Q711Q0 1435 aa14.54□□□□□ -0.08
SPG11-216ENST00000559347 MAPK8IP3Q9UPT6 1336 aa14.53□□□□□ -0.08
SPG11-216ENST00000559347 DCAF8L1A6NGE4 600 aa14.53□□□□□ -0.08
SPG11-216ENST00000559347 BTBD11A6QL63 1104 aa14.53□□□□□ -0.08
SPG11-216ENST00000559347 NEFMP07197 916 aa14.53□□□□□ -0.08
SPG11-216ENST00000559347 GYS1P13807 737 aa14.53□□□□□ -0.08
SPG11-216ENST00000559347 RFC4P35249 363 aa14.53□□□□□ -0.08
SPG11-216ENST00000559347 DCTN1Q14203 1278 aa14.53□□□□□ -0.08
SPG11-216ENST00000559347 MMP10P09238 476 aa14.52□□□□□ -0.09
SPG11-216ENST00000559347 NFE2L2Q16236 605 aa14.52□□□□□ -0.09
SPG11-216ENST00000559347 KCNQ3O43525 872 aa14.51□□□□□ -0.09
SPG11-216ENST00000559347 KCNA4P22459 653 aa14.51□□□□□ -0.09
SPG11-216ENST00000559347 FMNL2Q96PY5 1086 aa14.51□□□□□ -0.09
SPG11-216ENST00000559347 PNNQ9H307 717 aaKnown RBP14.51□□□□□ -0.09
SPG11-216ENST00000559347 SRP68Q9UHB9 627 aaKnown RBP14.51□□□□□ -0.09
SPG11-216ENST00000559347 CD2APQ9Y5K6 639 aa14.51□□□□□ -0.09
SPG11-216ENST00000559347 DLEC1Q9Y238 1755 aa14.51□□□□□ -0.09
SPG11-216ENST00000559347 PXDNLA1KZ92 1463 aa14.5□□□□□ -0.09
SPG11-216ENST00000559347 NLGN1Q8N2Q7 840 aa14.5□□□□□ -0.09
SPG11-216ENST00000559347 ARFGEF1Q9Y6D6 1849 aa14.49□□□□□ -0.09
SPG11-216ENST00000559347 STARD3NLO95772 234 aa14.48□□□□□ -0.09
SPG11-216ENST00000559347 TEX13AQ9BXU3 409 aaPredicted RBP14.48□□□□□ -0.09
SPG11-216ENST00000559347 ANKRD31Q8N7Z5 1873 aa14.48□□□□□ -0.09
SPG11-216ENST00000559347 NPM3O75607 178 aaKnown RBP14.47□□□□□ -0.09
SPG11-216ENST00000559347 CANXP27824 592 aaKnown RBP14.47□□□□□ -0.09
SPG11-216ENST00000559347 FKBP8Q14318 412 aa14.47□□□□□ -0.09
SPG11-216ENST00000559347 WDR43Q15061 677 aaKnown RBP eCLIP14.47□□□□□ -0.09
SPG11-216ENST00000559347 GPR162Q16538 588 aa14.47□□□□□ -0.09
SPG11-216ENST00000559347 NARFQ9UHQ1 456 aa14.47□□□□□ -0.09
SPG11-216ENST00000559347 PRAMEF22A3QJZ6 481 aa14.46□□□□□ -0.09
SPG11-216ENST00000559347 ZNF316A6NFI3 1004 aaPredicted RBP14.46□□□□□ -0.09
SPG11-216ENST00000559347 ZPR1O75312 459 aa14.46□□□□□ -0.09
SPG11-216ENST00000559347 YBX3P16989 372 aaKnown RBP eCLIP14.46□□□□□ -0.09
SPG11-216ENST00000559347 YY1P25490 414 aa14.46□□□□□ -0.09
SPG11-216ENST00000559347 EIF5P55010 431 aaKnown RBP14.46□□□□□ -0.09
SPG11-216ENST00000559347 DDR1Q08345 913 aa14.46□□□□□ -0.09
SPG11-216ENST00000559347 TAF7Q15545 349 aaPredicted RBP14.46□□□□□ -0.09
SPG11-216ENST00000559347 USPL1Q5W0Q7 1092 aa14.46□□□□□ -0.09
SPG11-216ENST00000559347 PELP1Q8IZL8 1130 aaKnown RBP14.46□□□□□ -0.09
SPG11-216ENST00000559347 THUMPD2Q9BTF0 503 aaKnown RBP14.46□□□□□ -0.09
SPG11-216ENST00000559347 COL11A2P13942 1736 aaPredicted RBP14.45□□□□□ -0.1
SPG11-216ENST00000559347 IL6STP40189 918 aaPredicted RBP14.45□□□□□ -0.1
SPG11-216ENST00000559347 CCDC146Q8IYE0 955 aa14.45□□□□□ -0.1
SPG11-216ENST00000559347 BCL2L12Q9HB09 334 aa14.45□□□□□ -0.1
SPG11-216ENST00000559347 PARP3Q9Y6F1 533 aa14.45□□□□□ -0.1
SPG11-216ENST00000559347 POLRMTO00411 1230 aaKnown RBP14.44□□□□□ -0.1
SPG11-216ENST00000559347 SNRPA1P09661 255 aaKnown RBP14.44□□□□□ -0.1
SPG11-216ENST00000559347 TMPOP42166 694 aaKnown RBP14.44□□□□□ -0.1
SPG11-216ENST00000559347 PNISRQ8TF01 805 aaKnown RBP14.44□□□□□ -0.1
SPG11-216ENST00000559347 MIS18AQ9NYP9 233 aa14.44□□□□□ -0.1
SPG11-216ENST00000559347 NUP98P52948 1817 aa14.43□□□□□ -0.1
SPG11-216ENST00000559347 A1BGP04217 495 aa14.43□□□□□ -0.1
SPG11-216ENST00000559347 RIPK4P57078 832 aa14.43□□□□□ -0.1
SPG11-216ENST00000559347 LMOD3Q0VAK6 560 aa14.43□□□□□ -0.1
SPG11-216ENST00000559347 RUNDC1Q96C34 613 aa14.43□□□□□ -0.1
SPG11-216ENST00000559347 ZNF330Q9Y3S2 320 aaPredicted RBP14.43□□□□□ -0.1
SPG11-216ENST00000559347 USP16Q9Y5T5 823 aa14.43□□□□□ -0.1
SPG11-216ENST00000559347 A0A087WZG4 1122 aa14.42□□□□□ -0.1
SPG11-216ENST00000559347 TM4SF1P30408 202 aa14.42□□□□□ -0.1
SPG11-216ENST00000559347 ADAMTS8Q9UP79 889 aa14.42□□□□□ -0.1
SPG11-216ENST00000559347 RRP7AQ9Y3A4 280 aaKnown RBP14.42□□□□□ -0.1
SPG11-216ENST00000559347 ARFGEF2Q9Y6D5 1785 aa14.42□□□□□ -0.1
SPG11-216ENST00000559347 CACNA1SQ13698 1873 aa14.42□□□□□ -0.1
SPG11-216ENST00000559347 PIP4K2AP48426 406 aaPredicted RBP14.41□□□□□ -0.1
SPG11-216ENST00000559347 NFIXQ14938 502 aa14.41□□□□□ -0.1
SPG11-216ENST00000559347 ANKRD36CQ5JPF3 1778 aa14.41□□□□□ -0.1
SPG11-216ENST00000559347 CARMIL3Q8ND23 1372 aa14.4□□□□□ -0.1
SPG11-216ENST00000559347 EIF4A1P60842 406 aaKnown RBP14.4□□□□□ -0.1
SPG11-216ENST00000559347 TGFB2P61812 414 aa14.4□□□□□ -0.1
SPG11-216ENST00000559347 WWC3Q9ULE0 1092 aa14.4□□□□□ -0.1
SPG11-216ENST00000559347 TBC1D2BQ9UPU7 963 aa14.4□□□□□ -0.1
SPG11-216ENST00000559347 NBPF26B4DH59 902 aa14.39□□□□□ -0.11
SPG11-216ENST00000559347 GRIN3BO60391 1043 aa14.39□□□□□ -0.11
SPG11-216ENST00000559347 GIGYF1O75420 1035 aaPredicted RBP14.39□□□□□ -0.11
SPG11-216ENST00000559347 CAMTA2O94983 1202 aa14.39□□□□□ -0.11
SPG11-216ENST00000559347 NBPF10Q6P3W6 841 aaKnown RBP14.39□□□□□ -0.11
SPG11-216ENST00000559347 NBPF15Q8N660 670 aa14.39□□□□□ -0.11
SPG11-216ENST00000559347 TSPYL4Q9UJ04 414 aa14.39□□□□□ -0.11
SPG11-216ENST00000559347 TRIM35Q9UPQ4 493 aa14.39□□□□□ -0.11
SPG11-216ENST00000559347 NEUROD2Q15784 382 aa14.38□□□□□ -0.11
SPG11-216ENST00000559347 TBC1D9BQ66K14 1250 aa14.38□□□□□ -0.11
SPG11-216ENST00000559347 DZIP3Q86Y13 1208 aaKnown RBP14.38□□□□□ -0.11
SPG11-216ENST00000559347 A0A0G2JLW4 131 aa14.37□□□□□ -0.11
SPG11-216ENST00000559347 DPEP1P16444 411 aa14.37□□□□□ -0.11
SPG11-216ENST00000559347 CCDC184Q52MB2 194 aa14.37□□□□□ -0.11
SPG11-216ENST00000559347 NPM2Q86SE8 214 aaKnown RBP14.37□□□□□ -0.11
SPG11-216ENST00000559347 BABAM1Q9NWV8 329 aa14.37□□□□□ -0.11
SPG11-216ENST00000559347 TNRC6CQ9HCJ0 1690 aaKnown RBP14.36□□□□□ -0.11
SPG11-216ENST00000559347 SERPINB2P05120 415 aa14.36□□□□□ -0.11
SPG11-216ENST00000559347 KCNA3P22001 575 aa14.36□□□□□ -0.11
SPG11-216ENST00000559347 BICDL1Q6ZP65 573 aa14.36□□□□□ -0.11
SPG11-216ENST00000559347 SBF1O95248 1867 aa14.35□□□□□ -0.11
SPG11-216ENST00000559347 ADCY9O60503 1353 aa14.35□□□□□ -0.11
SPG11-216ENST00000559347 RGL2O15211 777 aa14.34□□□□□ -0.11
SPG11-216ENST00000559347 ANP32CO43423 234 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms