RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 ERBB4Q15303 1308 aa11.88□□□□□ -0.51
LDLR-210ENST00000559340 COL5A3P25940 1745 aaPredicted RBP11.88□□□□□ -0.51
LDLR-210ENST00000559340 TJP1Q07157 1748 aa11.88□□□□□ -0.51
LDLR-210ENST00000559340 RREB1Q92766 1687 aa11.87□□□□□ -0.51
LDLR-210ENST00000559340 ELL2O00472 640 aaPredicted RBP11.87□□□□□ -0.51
LDLR-210ENST00000559340 CYP19A1P11511 503 aaPredicted RBP11.87□□□□□ -0.51
LDLR-210ENST00000559340 EIF2S2P20042 333 aaKnown RBP11.87□□□□□ -0.51
LDLR-210ENST00000559340 PROM2Q8N271 834 aa11.87□□□□□ -0.51
LDLR-210ENST00000559340 C8orf58Q8NAV2 365 aa11.87□□□□□ -0.51
LDLR-210ENST00000559340 FLAD1Q8NFF5 587 aa11.87□□□□□ -0.51
LDLR-210ENST00000559340 AK7Q96M32 723 aa11.87□□□□□ -0.51
LDLR-210ENST00000559340 SLC4A9Q96Q91 983 aa11.87□□□□□ -0.51
LDLR-210ENST00000559340 STK31Q9BXU1 1019 aa11.87□□□□□ -0.51
LDLR-210ENST00000559340 STK32BQ9NY57 414 aa11.87□□□□□ -0.51
LDLR-210ENST00000559340 CNTNAP4Q9C0A0 1308 aa11.86□□□□□ -0.51
LDLR-210ENST00000559340 A0A087WZG4 1122 aa11.86□□□□□ -0.51
LDLR-210ENST00000559340 VAMP4O75379 141 aa11.86□□□□□ -0.51
LDLR-210ENST00000559340 ITPK1Q13572 414 aa11.86□□□□□ -0.51
LDLR-210ENST00000559340 HDGFL1Q5TGJ6 251 aa11.86□□□□□ -0.51
LDLR-210ENST00000559340 SPON1Q9HCB6 807 aa11.86□□□□□ -0.51
LDLR-210ENST00000559340 LRRC4BQ9NT99 713 aa11.86□□□□□ -0.51
LDLR-210ENST00000559340 CCDC87Q9NVE4 849 aa11.86□□□□□ -0.51
LDLR-210ENST00000559340 USP16Q9Y5T5 823 aa11.86□□□□□ -0.51
LDLR-210ENST00000559340 C4BP0C0L5 1744 aa11.86□□□□□ -0.51
LDLR-210ENST00000559340 CRKLP46109 303 aaKnown RBP11.85□□□□□ -0.51
LDLR-210ENST00000559340 LINC00116Q8NCU8 138 aa11.85□□□□□ -0.51
LDLR-210ENST00000559340 DBF4Q9UBU7 674 aaPredicted RBP11.85□□□□□ -0.51
LDLR-210ENST00000559340 RTCBQ9Y3I0 505 aaKnown RBP11.85□□□□□ -0.51
LDLR-210ENST00000559340 NUP188Q5SRE5 1749 aa11.85□□□□□ -0.51
LDLR-210ENST00000559340 RPS6KA4O75676 772 aa11.84□□□□□ -0.51
LDLR-210ENST00000559340 ADRA2BP18089 450 aa11.84□□□□□ -0.51
LDLR-210ENST00000559340 IL6STP40189 918 aaPredicted RBP11.84□□□□□ -0.51
LDLR-210ENST00000559340 KCNQ4P56696 695 aa11.84□□□□□ -0.51
LDLR-210ENST00000559340 KRT24Q2M2I5 525 aa11.84□□□□□ -0.51
LDLR-210ENST00000559340 ALDH1L2Q3SY69 923 aa11.84□□□□□ -0.51
LDLR-210ENST00000559340 TSPYL6Q8N831 410 aa11.84□□□□□ -0.51
LDLR-210ENST00000559340 DDX21Q9NR30 783 aaKnown RBP eCLIP11.84□□□□□ -0.51
LDLR-210ENST00000559340 HYPKQ9NX55 129 aa11.84□□□□□ -0.51
LDLR-210ENST00000559340 TFCP2L1Q9NZI6 479 aa11.84□□□□□ -0.51
LDLR-210ENST00000559340 UBR3Q6ZT12 1888 aa11.84□□□□□ -0.51
LDLR-210ENST00000559340 QSER1Q2KHR3 1735 aa11.83□□□□□ -0.52
LDLR-210ENST00000559340 PRAMEF22A3QJZ6 481 aa11.83□□□□□ -0.52
LDLR-210ENST00000559340 DCAF8L1A6NGE4 600 aa11.83□□□□□ -0.52
LDLR-210ENST00000559340 GNPATO15228 680 aa11.83□□□□□ -0.52
LDLR-210ENST00000559340 A1BGP04217 495 aa11.83□□□□□ -0.52
LDLR-210ENST00000559340 CANXP27824 592 aaKnown RBP11.83□□□□□ -0.52
LDLR-210ENST00000559340 TRAPPC3LQ5T215 181 aa11.83□□□□□ -0.52
LDLR-210ENST00000559340 INTS5Q6P9B9 1019 aaKnown RBP11.83□□□□□ -0.52
LDLR-210ENST00000559340 PPP1R1BQ9UD71 204 aaPredicted RBP11.83□□□□□ -0.52
LDLR-210ENST00000559340 SSFA2P28290 1259 aa11.82□□□□□ -0.52
LDLR-210ENST00000559340 SLC15A2Q16348 729 aa11.82□□□□□ -0.52
LDLR-210ENST00000559340 NECTIN2Q92692 538 aa11.82□□□□□ -0.52
LDLR-210ENST00000559340 AKT1S1Q96B36 256 aa11.82□□□□□ -0.52
LDLR-210ENST00000559340 DDX58O95786 925 aaKnown RBP11.81□□□□□ -0.52
LDLR-210ENST00000559340 SLC4A2P04920 1241 aa11.81□□□□□ -0.52
LDLR-210ENST00000559340 ZBTB1Q9Y2K1 713 aa11.81□□□□□ -0.52
LDLR-210ENST00000559340 ZPR1O75312 459 aa11.8□□□□□ -0.52
LDLR-210ENST00000559340 MYL6BP14649 208 aa11.8□□□□□ -0.52
LDLR-210ENST00000559340 YY1P25490 414 aa11.8□□□□□ -0.52
LDLR-210ENST00000559340 RFC4P35249 363 aa11.8□□□□□ -0.52
LDLR-210ENST00000559340 EIF5P55010 431 aaKnown RBP11.8□□□□□ -0.52
LDLR-210ENST00000559340 KIF6Q6ZMV9 814 aa11.8□□□□□ -0.52
LDLR-210ENST00000559340 ARXQ96QS3 562 aa11.8□□□□□ -0.52
LDLR-210ENST00000559340 CHPF2Q9P2E5 772 aa11.8□□□□□ -0.52
LDLR-210ENST00000559340 ZNF330Q9Y3S2 320 aaPredicted RBP11.8□□□□□ -0.52
LDLR-210ENST00000559340 TUBGCP6Q96RT7 1819 aa11.79□□□□□ -0.52
LDLR-210ENST00000559340 NBPF26B4DH59 902 aa11.79□□□□□ -0.52
LDLR-210ENST00000559340 IPO8O15397 1037 aaKnown RBP11.79□□□□□ -0.52
LDLR-210ENST00000559340 BRPF1P55201 1214 aaPredicted RBP11.79□□□□□ -0.52
LDLR-210ENST00000559340 NBPF10Q6P3W6 841 aaKnown RBP11.79□□□□□ -0.52
LDLR-210ENST00000559340 NBPF15Q8N660 670 aa11.79□□□□□ -0.52
LDLR-210ENST00000559340 SMC4Q9NTJ3 1288 aa11.79□□□□□ -0.52
LDLR-210ENST00000559340 NUP98P52948 1817 aa11.79□□□□□ -0.52
LDLR-210ENST00000559340 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.78□□□□□ -0.52
LDLR-210ENST00000559340 RGL2O15211 777 aa11.78□□□□□ -0.52
LDLR-210ENST00000559340 MSH5O43196 834 aa11.78□□□□□ -0.52
LDLR-210ENST00000559340 RARSP54136 660 aaKnown RBP11.78□□□□□ -0.52
LDLR-210ENST00000559340 PDIA6Q15084 440 aa11.78□□□□□ -0.52
LDLR-210ENST00000559340 DZIP3Q86Y13 1208 aaKnown RBP11.78□□□□□ -0.52
LDLR-210ENST00000559340 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.78□□□□□ -0.52
LDLR-210ENST00000559340 SLC16A10Q8TF71 515 aa11.78□□□□□ -0.52
LDLR-210ENST00000559340 RCAN3Q9UKA8 241 aa11.78□□□□□ -0.52
LDLR-210ENST00000559340 ZNF652Q9Y2D9 606 aa11.78□□□□□ -0.52
LDLR-210ENST00000559340 COL15A1P39059 1388 aa11.78□□□□□ -0.52
LDLR-210ENST00000559340 ERVV-1B6SEH8 477 aa11.77□□□□□ -0.53
LDLR-210ENST00000559340 PHF14O94880 888 aa11.77□□□□□ -0.53
LDLR-210ENST00000559340 CENPBP07199 599 aaPredicted RBP11.77□□□□□ -0.53
LDLR-210ENST00000559340 AIMP1Q12904 312 aaKnown RBP11.77□□□□□ -0.53
LDLR-210ENST00000559340 ZNF827Q17R98 1081 aa11.77□□□□□ -0.53
LDLR-210ENST00000559340 HSP90AB3PQ58FF7 597 aa11.77□□□□□ -0.53
LDLR-210ENST00000559340 ANKRD13DQ6ZTN6 518 aa11.77□□□□□ -0.53
LDLR-210ENST00000559340 COPS6Q7L5N1 327 aa11.77□□□□□ -0.53
LDLR-210ENST00000559340 MRPL50Q8N5N7 158 aaKnown RBP11.77□□□□□ -0.53
LDLR-210ENST00000559340 XAGE3Q8WTP9 111 aa11.77□□□□□ -0.53
LDLR-210ENST00000559340 SSH1Q8WYL5 1049 aa11.77□□□□□ -0.53
LDLR-210ENST00000559340 ARHGEF1Q92888 912 aaKnown RBP11.77□□□□□ -0.53
LDLR-210ENST00000559340 ANO8Q9HCE9 1232 aaPredicted RBP11.77□□□□□ -0.53
LDLR-210ENST00000559340 NARFQ9UHQ1 456 aa11.77□□□□□ -0.53
LDLR-210ENST00000559340 PTPRCP08575 1304 aa11.77□□□□□ -0.53
LDLR-210ENST00000559340 KIF16BQ96L93 1317 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 175.9 ms