RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 RTN2O75298 545 aa9.95□□□□□ -0.82
USP3-211ENST00000559257 NAA30Q147X3 362 aaPredicted RBP9.95□□□□□ -0.82
USP3-211ENST00000559257 HSP90B2PQ58FF3 399 aa9.95□□□□□ -0.82
USP3-211ENST00000559257 REXO1L1PQ8IX06 675 aa9.95□□□□□ -0.82
USP3-211ENST00000559257 KIF2CQ99661 725 aa9.95□□□□□ -0.82
USP3-211ENST00000559257 KCNF1Q9H3M0 494 aa9.95□□□□□ -0.82
USP3-211ENST00000559257 K7ELQ4 463 aaPredicted RBP9.94□□□□□ -0.82
USP3-211ENST00000559257 PECAM1P16284 738 aaPredicted RBP9.94□□□□□ -0.82
USP3-211ENST00000559257 RDXP35241 583 aaKnown RBP9.94□□□□□ -0.82
USP3-211ENST00000559257 EIF5P55010 431 aaKnown RBP9.94□□□□□ -0.82
USP3-211ENST00000559257 DDR1Q08345 913 aa9.94□□□□□ -0.82
USP3-211ENST00000559257 RMI1Q9H9A7 625 aa9.94□□□□□ -0.82
USP3-211ENST00000559257 SYNPO2Q9UMS6 1093 aa9.94□□□□□ -0.82
USP3-211ENST00000559257 SCAF11Q99590 1463 aaKnown RBP9.94□□□□□ -0.82
USP3-211ENST00000559257 TPD52L2O43399 206 aaKnown RBP9.94□□□□□ -0.82
USP3-211ENST00000559257 PAX3P23760 479 aa9.94□□□□□ -0.82
USP3-211ENST00000559257 NAP1L1P55209 391 aaKnown RBP9.94□□□□□ -0.82
USP3-211ENST00000559257 PMFBP1Q8TBY8 1022 aa9.94□□□□□ -0.82
USP3-211ENST00000559257 MICAL1Q8TDZ2 1067 aa9.94□□□□□ -0.82
USP3-211ENST00000559257 SNRNP27Q8WVK2 155 aaKnown RBP9.94□□□□□ -0.82
USP3-211ENST00000559257 NECTIN2Q92692 538 aa9.94□□□□□ -0.82
USP3-211ENST00000559257 AGAP3Q96P47 875 aa9.94□□□□□ -0.82
USP3-211ENST00000559257 UTP14AQ9BVJ6 771 aaKnown RBP9.94□□□□□ -0.82
USP3-211ENST00000559257 CLIP2Q9UDT6 1046 aa9.94□□□□□ -0.82
USP3-211ENST00000559257 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.94□□□□□ -0.82
USP3-211ENST00000559257 GRIN2BQ13224 1484 aa9.93□□□□□ -0.82
USP3-211ENST00000559257 ALDH1B1P30837 517 aa9.93□□□□□ -0.82
USP3-211ENST00000559257 ANKRD18AQ8IVF6 992 aa9.93□□□□□ -0.82
USP3-211ENST00000559257 NME8Q8N427 588 aa9.93□□□□□ -0.82
USP3-211ENST00000559257 IQCGQ9H095 443 aaKnown RBP9.93□□□□□ -0.82
USP3-211ENST00000559257 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.93□□□□□ -0.82
USP3-211ENST00000559257 ARHGEF11O15085 1522 aa9.93□□□□□ -0.82
USP3-211ENST00000559257 TCOF1Q13428 1488 aaKnown RBP9.93□□□□□ -0.82
USP3-211ENST00000559257 SYNRGQ9UMZ2 1314 aa9.93□□□□□ -0.82
USP3-211ENST00000559257 OATP04181 439 aa9.92□□□□□ -0.82
USP3-211ENST00000559257 HNRNPH1P31943 449 aaKnown RBP9.92□□□□□ -0.82
USP3-211ENST00000559257 CCNHP51946 323 aaPredicted RBP9.92□□□□□ -0.82
USP3-211ENST00000559257 CTCFLQ8NI51 663 aaPredicted RBP9.92□□□□□ -0.82
USP3-211ENST00000559257 SRRTQ9BXP5 876 aaKnown RBP9.92□□□□□ -0.82
USP3-211ENST00000559257 ARGLU1Q9NWB6 273 aaPredicted RBP9.92□□□□□ -0.82
USP3-211ENST00000559257 RBM27Q9P2N5 1060 aaKnown RBP9.92□□□□□ -0.82
USP3-211ENST00000559257 UGGT2Q9NYU1 1516 aa9.92□□□□□ -0.82
USP3-211ENST00000559257 ELP1O95163 1332 aa9.92□□□□□ -0.82
USP3-211ENST00000559257 ELF2Q15723 593 aa9.92□□□□□ -0.82
USP3-211ENST00000559257 NBPF8Q3BBV2 869 aa9.92□□□□□ -0.82
USP3-211ENST00000559257 ANKRD45Q5TZF3 282 aa9.92□□□□□ -0.82
USP3-211ENST00000559257 ZNF280DQ6N043 979 aa9.92□□□□□ -0.82
USP3-211ENST00000559257 TCP11Q8WWU5 503 aa9.92□□□□□ -0.82
USP3-211ENST00000559257 PLEKHG4BQ96PX9 1271 aa9.92□□□□□ -0.82
USP3-211ENST00000559257 ARPC5LQ9BPX5 153 aa9.92□□□□□ -0.82
USP3-211ENST00000559257 ZNF215Q9UL58 517 aaPredicted RBP9.92□□□□□ -0.82
USP3-211ENST00000559257 RBM47A0AV96 593 aaKnown RBP9.91□□□□□ -0.82
USP3-211ENST00000559257 POLR3GO15318 223 aaPredicted RBP9.91□□□□□ -0.82
USP3-211ENST00000559257 SLU7O95391 586 aaKnown RBP9.91□□□□□ -0.82
USP3-211ENST00000559257 GPTP24298 496 aa9.91□□□□□ -0.82
USP3-211ENST00000559257 NF2P35240 595 aa9.91□□□□□ -0.82
USP3-211ENST00000559257 HHATQ5VTY9 493 aa9.91□□□□□ -0.82
USP3-211ENST00000559257 NUTM2GQ5VZR2 741 aa9.91□□□□□ -0.82
USP3-211ENST00000559257 LRRC31Q6UY01 552 aa9.91□□□□□ -0.82
USP3-211ENST00000559257 HELBQ8NG08 1087 aaPredicted RBP9.91□□□□□ -0.82
USP3-211ENST00000559257 DDX11Q96FC9 970 aa9.91□□□□□ -0.82
USP3-211ENST00000559257 CWC25Q9NXE8 425 aaPredicted RBP9.91□□□□□ -0.82
USP3-211ENST00000559257 RIPOR2Q9Y4F9 1068 aa9.91□□□□□ -0.82
USP3-211ENST00000559257 KDRP35968 1356 aa9.91□□□□□ -0.82
USP3-211ENST00000559257 PES1O00541 588 aaKnown RBP9.91□□□□□ -0.82
USP3-211ENST00000559257 CLCN6P51797 869 aa9.91□□□□□ -0.82
USP3-211ENST00000559257 ZCRB1Q8TBF4 217 aaKnown RBP9.91□□□□□ -0.82
USP3-211ENST00000559257 RTF1Q92541 710 aaKnown RBP9.91□□□□□ -0.82
USP3-211ENST00000559257 THUMPD2Q9BTF0 503 aaKnown RBP9.91□□□□□ -0.82
USP3-211ENST00000559257 UBA5Q9GZZ9 404 aa9.91□□□□□ -0.82
USP3-211ENST00000559257 HOMER3Q9NSC5 361 aa9.91□□□□□ -0.82
USP3-211ENST00000559257 NAIPQ13075 1403 aa9.91□□□□□ -0.82
USP3-211ENST00000559257 A0A1B0GUA9 196 aa9.9□□□□□ -0.82
USP3-211ENST00000559257 AP1G2O75843 785 aa9.9□□□□□ -0.82
USP3-211ENST00000559257 PDE3AQ14432 1141 aa9.9□□□□□ -0.82
USP3-211ENST00000559257 PREPLQ4J6C6 727 aaPredicted RBP9.9□□□□□ -0.82
USP3-211ENST00000559257 N4BP2L2Q92802 583 aaPredicted RBP9.9□□□□□ -0.82
USP3-211ENST00000559257 MTA3Q9BTC8 594 aa9.9□□□□□ -0.82
USP3-211ENST00000559257 ANKRD30AQ9BXX3 1397 aa9.9□□□□□ -0.82
USP3-211ENST00000559257 ERBB3P21860 1342 aa9.9□□□□□ -0.82
USP3-211ENST00000559257 H7C1W4 665 aa9.9□□□□□ -0.83
USP3-211ENST00000559257 NAT1P18440 290 aa9.9□□□□□ -0.83
USP3-211ENST00000559257 OAS2P29728 719 aaKnown RBP9.9□□□□□ -0.83
USP3-211ENST00000559257 CCDC178Q5BJE1 867 aa9.9□□□□□ -0.83
USP3-211ENST00000559257 CEP135Q66GS9 1140 aa9.9□□□□□ -0.83
USP3-211ENST00000559257 TMCO3Q6UWJ1 677 aa9.9□□□□□ -0.83
USP3-211ENST00000559257 CLUAP1Q96AJ1 413 aa9.9□□□□□ -0.83
USP3-211ENST00000559257 EXOC6BQ9Y2D4 811 aa9.9□□□□□ -0.83
USP3-211ENST00000559257 AKAP2Q9Y2D5 859 aa9.9□□□□□ -0.83
USP3-211ENST00000559257 CCDC171Q6TFL3 1326 aa9.89□□□□□ -0.83
USP3-211ENST00000559257 PRPF40AO75400 957 aaKnown RBP9.89□□□□□ -0.83
USP3-211ENST00000559257 ERLIN2O94905 339 aa9.89□□□□□ -0.83
USP3-211ENST00000559257 RLBP1P12271 317 aa9.89□□□□□ -0.83
USP3-211ENST00000559257 LMAN1P49257 510 aa9.89□□□□□ -0.83
USP3-211ENST00000559257 RAB27AP51159 221 aa9.89□□□□□ -0.83
USP3-211ENST00000559257 MYLK4Q86YV6 388 aaPredicted RBP9.89□□□□□ -0.83
USP3-211ENST00000559257 PRPF38AQ8NAV1 312 aaKnown RBP9.89□□□□□ -0.83
USP3-211ENST00000559257 C17orf50Q8WW18 174 aa9.89□□□□□ -0.83
USP3-211ENST00000559257 PDRG1Q9NUG6 133 aa9.89□□□□□ -0.83
USP3-211ENST00000559257 ROCK1Q13464 1354 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 166.9 ms