RNA–Protein interactions for RNA: ENST00000558855.5

VPS18-203, Transcript of VPS18, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS18, Length 1,050 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS18-203ENST00000558855 USPL1Q5W0Q7 1092 aa18.27■□□□□ 0.52
VPS18-203ENST00000558855 CEMIPQ8WUJ3 1361 aa18.27■□□□□ 0.51
VPS18-203ENST00000558855 COL11A2P13942 1736 aaPredicted RBP18.26■□□□□ 0.51
VPS18-203ENST00000558855 POLRMTO00411 1230 aaKnown RBP18.26■□□□□ 0.51
VPS18-203ENST00000558855 KCNQ3O43525 872 aa18.26■□□□□ 0.51
VPS18-203ENST00000558855 ZNF496Q96IT1 587 aaPredicted RBP18.26■□□□□ 0.51
VPS18-203ENST00000558855 SBF1O95248 1867 aa18.26■□□□□ 0.51
VPS18-203ENST00000558855 TM4SF1P30408 202 aa18.25■□□□□ 0.51
VPS18-203ENST00000558855 PARP3Q9Y6F1 533 aa18.25■□□□□ 0.51
VPS18-203ENST00000558855 GNAT3A8MTJ3 354 aa18.24■□□□□ 0.51
VPS18-203ENST00000558855 GIGYF1O75420 1035 aaPredicted RBP18.24■□□□□ 0.51
VPS18-203ENST00000558855 TGFB2P61812 414 aa18.24■□□□□ 0.51
VPS18-203ENST00000558855 ZNF526Q8TF50 670 aaPredicted RBP18.24■□□□□ 0.51
VPS18-203ENST00000558855 BCS1LQ9Y276 419 aa18.24■□□□□ 0.51
VPS18-203ENST00000558855 CARMIL3Q8ND23 1372 aa18.24■□□□□ 0.51
VPS18-203ENST00000558855 HEG1Q9ULI3 1381 aa18.23■□□□□ 0.51
VPS18-203ENST00000558855 CHRNA5P30532 468 aa18.23■□□□□ 0.51
VPS18-203ENST00000558855 GAS2L2Q8NHY3 880 aa18.23■□□□□ 0.51
VPS18-203ENST00000558855 CACNA1SQ13698 1873 aa18.22■□□□□ 0.51
VPS18-203ENST00000558855 CANXP27824 592 aaKnown RBP18.22■□□□□ 0.51
VPS18-203ENST00000558855 NFIXQ14938 502 aa18.22■□□□□ 0.51
VPS18-203ENST00000558855 KDM3BQ7LBC6 1761 aa18.22■□□□□ 0.51
VPS18-203ENST00000558855 SENP3-EIF4A1A0A087X0R7 540 aa18.21■□□□□ 0.51
VPS18-203ENST00000558855 ZNF790Q6PG37 636 aa18.21■□□□□ 0.51
VPS18-203ENST00000558855 VSIG10Q8N0Z9 540 aa18.21■□□□□ 0.51
VPS18-203ENST00000558855 NARFQ9UHQ1 456 aa18.21■□□□□ 0.51
VPS18-203ENST00000558855 LAMB4A4D0S4 1761 aa18.21■□□□□ 0.51
VPS18-203ENST00000558855 CCDC88AQ3V6T2 1871 aa18.2■□□□□ 0.5
VPS18-203ENST00000558855 PRAMEF22A3QJZ6 481 aa18.2■□□□□ 0.5
VPS18-203ENST00000558855 TEFQ10587 303 aa18.2■□□□□ 0.5
VPS18-203ENST00000558855 DCTN1Q14203 1278 aa18.2■□□□□ 0.5
VPS18-203ENST00000558855 FCHSD2O94868 740 aa18.19■□□□□ 0.5
VPS18-203ENST00000558855 U2AF1L5P0DN76 240 aaPredicted RBP18.19■□□□□ 0.5
VPS18-203ENST00000558855 EIF5P55010 431 aaKnown RBP18.19■□□□□ 0.5
VPS18-203ENST00000558855 U2AF1Q01081 240 aaKnown RBP eCLIP18.19■□□□□ 0.5
VPS18-203ENST00000558855 MCM10Q7L590 875 aa18.19■□□□□ 0.5
VPS18-203ENST00000558855 CFAP53Q96M91 514 aa18.19■□□□□ 0.5
VPS18-203ENST00000558855 ZPR1O75312 459 aa18.18■□□□□ 0.5
VPS18-203ENST00000558855 PIP4K2AP48426 406 aaPredicted RBP18.18■□□□□ 0.5
VPS18-203ENST00000558855 TTC5Q8N0Z6 440 aa18.18■□□□□ 0.5
VPS18-203ENST00000558855 CEP350Q5VT06 3117 aa18.17■□□□□ 0.5
VPS18-203ENST00000558855 A1BGP04217 495 aa18.17■□□□□ 0.5
VPS18-203ENST00000558855 TIAM2Q8IVF5 1701 aa18.16■□□□□ 0.5
VPS18-203ENST00000558855 ARHGAP27Q6ZUM4 889 aa18.16■□□□□ 0.5
VPS18-203ENST00000558855 GPBP1L1Q9HC44 474 aaPredicted RBP18.16■□□□□ 0.5
VPS18-203ENST00000558855 KIF3CO14782 793 aa18.15■□□□□ 0.5
VPS18-203ENST00000558855 TBC1D9BQ66K14 1250 aa18.15■□□□□ 0.5
VPS18-203ENST00000558855 USP16Q9Y5T5 823 aa18.15■□□□□ 0.5
VPS18-203ENST00000558855 BTBD11A6QL63 1104 aa18.14■□□□□ 0.49
VPS18-203ENST00000558855 SERPINB2P05120 415 aa18.14■□□□□ 0.49
VPS18-203ENST00000558855 BICDL1Q6ZP65 573 aa18.14■□□□□ 0.49
VPS18-203ENST00000558855 CCDC24Q8N4L8 307 aa18.14■□□□□ 0.49
VPS18-203ENST00000558855 PIM2Q9P1W9 311 aa18.14■□□□□ 0.49
VPS18-203ENST00000558855 TBC1D2BQ9UPU7 963 aa18.14■□□□□ 0.49
VPS18-203ENST00000558855 ARFGEF2Q9Y6D5 1785 aa18.13■□□□□ 0.49
VPS18-203ENST00000558855 PRELPP51888 382 aa18.13■□□□□ 0.49
VPS18-203ENST00000558855 FMNL2Q96PY5 1086 aa18.13■□□□□ 0.49
VPS18-203ENST00000558855 NUDCQ9Y266 331 aa18.13■□□□□ 0.49
VPS18-203ENST00000558855 ZNF330Q9Y3S2 320 aaPredicted RBP18.13■□□□□ 0.49
VPS18-203ENST00000558855 STARD3NLO95772 234 aa18.12■□□□□ 0.49
VPS18-203ENST00000558855 FER1L6Q2WGJ9 1857 aa18.12■□□□□ 0.49
VPS18-203ENST00000558855 CAMTA2O94983 1202 aa18.11■□□□□ 0.49
VPS18-203ENST00000558855 RASSF7Q02833 373 aa18.11■□□□□ 0.49
VPS18-203ENST00000558855 DALRD3Q5D0E6 543 aaKnown RBP18.11■□□□□ 0.49
VPS18-203ENST00000558855 PLEKHF1Q96S99 279 aa18.11■□□□□ 0.49
VPS18-203ENST00000558855 MIS18AQ9NYP9 233 aa18.11■□□□□ 0.49
VPS18-203ENST00000558855 SLX4Q8IY92 1834 aa18.11■□□□□ 0.49
VPS18-203ENST00000558855 IL6STP40189 918 aaPredicted RBP18.1■□□□□ 0.49
VPS18-203ENST00000558855 C9orf131Q5VYM1 1079 aa18.1■□□□□ 0.49
VPS18-203ENST00000558855 THUMPD2Q9BTF0 503 aaKnown RBP18.1■□□□□ 0.49
VPS18-203ENST00000558855 NMRK2Q9NPI5 230 aa18.1■□□□□ 0.49
VPS18-203ENST00000558855 TNRC6CQ9HCJ0 1690 aaKnown RBP18.09■□□□□ 0.49
VPS18-203ENST00000558855 NBPF26B4DH59 902 aa18.09■□□□□ 0.49
VPS18-203ENST00000558855 NBPF10Q6P3W6 841 aaKnown RBP18.09■□□□□ 0.49
VPS18-203ENST00000558855 NBPF15Q8N660 670 aa18.09■□□□□ 0.49
VPS18-203ENST00000558855 NUP98P52948 1817 aa18.09■□□□□ 0.49
VPS18-203ENST00000558855 PRR5LQ6MZQ0 368 aa18.08■□□□□ 0.48
VPS18-203ENST00000558855 DICER1Q9UPY3 1922 aaKnown RBP18.08■□□□□ 0.48
VPS18-203ENST00000558855 C2CD5Q86YS7 1000 aa18.07■□□□□ 0.48
VPS18-203ENST00000558855 TEX13AQ9BXU3 409 aaPredicted RBP18.07■□□□□ 0.48
VPS18-203ENST00000558855 A0A087WZG4 1122 aa18.06■□□□□ 0.48
VPS18-203ENST00000558855 DZIP3Q86Y13 1208 aaKnown RBP18.06■□□□□ 0.48
VPS18-203ENST00000558855 RTF1Q92541 710 aaKnown RBP18.06■□□□□ 0.48
VPS18-203ENST00000558855 RNF181Q9P0P0 153 aa18.06■□□□□ 0.48
VPS18-203ENST00000558855 NFKBIEO00221 500 aa18.04■□□□□ 0.48
VPS18-203ENST00000558855 HTATSF1O43719 755 aaKnown RBP18.03■□□□□ 0.48
VPS18-203ENST00000558855 SNRPA1P09661 255 aaKnown RBP18.03■□□□□ 0.48
VPS18-203ENST00000558855 WDR90Q96KV7 1748 aa18.03■□□□□ 0.48
VPS18-203ENST00000558855 TAF7Q15545 349 aaPredicted RBP18.02■□□□□ 0.48
VPS18-203ENST00000558855 NFE2L2Q16236 605 aa18.02■□□□□ 0.48
VPS18-203ENST00000558855 HSPA6P17066 643 aa18.01■□□□□ 0.47
VPS18-203ENST00000558855 HLFQ16534 295 aa18.01■□□□□ 0.47
VPS18-203ENST00000558855 TTLL6Q8N841 843 aa18.01■□□□□ 0.47
VPS18-203ENST00000558855 ZNF219Q9P2Y4 722 aaPredicted RBP18.01■□□□□ 0.47
VPS18-203ENST00000558855 DDX10Q13206 875 aaKnown RBP18■□□□□ 0.47
VPS18-203ENST00000558855 BRIP1Q9BX63 1249 aa18■□□□□ 0.47
VPS18-203ENST00000558855 H0YIN7 160 aa17.99■□□□□ 0.47
VPS18-203ENST00000558855 EIF4A1P60842 406 aaKnown RBP17.99■□□□□ 0.47
VPS18-203ENST00000558855 ZNF622Q969S3 477 aaKnown RBP eCLIP17.99■□□□□ 0.47
VPS18-203ENST00000558855 CNBD1Q8NA66 436 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms