RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 RNMTO43148 476 aaKnown RBP9.77□□□□□ -0.85
SCFD1-222ENST00000556768 MNX1P50219 401 aaPredicted RBP9.77□□□□□ -0.85
SCFD1-222ENST00000556768 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.77□□□□□ -0.85
SCFD1-222ENST00000556768 TTC5Q8N0Z6 440 aa9.77□□□□□ -0.85
SCFD1-222ENST00000556768 LGR6Q9HBX8 967 aa9.77□□□□□ -0.85
SCFD1-222ENST00000556768 CD2APQ9Y5K6 639 aa9.77□□□□□ -0.85
SCFD1-222ENST00000556768 PPP2R1AP30153 589 aa9.76□□□□□ -0.85
SCFD1-222ENST00000556768 RTF1Q92541 710 aaKnown RBP9.76□□□□□ -0.85
SCFD1-222ENST00000556768 PAPPAQ13219 1627 aa9.76□□□□□ -0.85
SCFD1-222ENST00000556768 GRIN3BO60391 1043 aa9.75□□□□□ -0.85
SCFD1-222ENST00000556768 RPS6KA4O75676 772 aa9.75□□□□□ -0.85
SCFD1-222ENST00000556768 FCHSD2O94868 740 aa9.75□□□□□ -0.85
SCFD1-222ENST00000556768 NPM2Q86SE8 214 aaKnown RBP9.75□□□□□ -0.85
SCFD1-222ENST00000556768 KDM6AO15550 1401 aaPredicted RBP9.75□□□□□ -0.85
SCFD1-222ENST00000556768 CASZ1Q86V15 1759 aa9.75□□□□□ -0.85
SCFD1-222ENST00000556768 PKD1L3Q7Z443 1732 aa9.75□□□□□ -0.85
SCFD1-222ENST00000556768 CNTNAP4Q9C0A0 1308 aa9.75□□□□□ -0.85
SCFD1-222ENST00000556768 PRKAR2BP31323 418 aa9.75□□□□□ -0.85
SCFD1-222ENST00000556768 KCNV2Q8TDN2 545 aa9.75□□□□□ -0.85
SCFD1-222ENST00000556768 ARHGEF1Q92888 912 aaKnown RBP9.75□□□□□ -0.85
SCFD1-222ENST00000556768 PNNQ9H307 717 aaKnown RBP9.75□□□□□ -0.85
SCFD1-222ENST00000556768 SHANK3Q9BYB0 1731 aa9.74□□□□□ -0.85
SCFD1-222ENST00000556768 STARD3NLO95772 234 aa9.74□□□□□ -0.85
SCFD1-222ENST00000556768 CRKLP46109 303 aaKnown RBP9.74□□□□□ -0.85
SCFD1-222ENST00000556768 SLC4A9Q96Q91 983 aa9.74□□□□□ -0.85
SCFD1-222ENST00000556768 ZPR1O75312 459 aa9.73□□□□□ -0.85
SCFD1-222ENST00000556768 SMIM5Q71RC9 77 aa9.73□□□□□ -0.85
SCFD1-222ENST00000556768 AMIGO3Q86WK7 504 aa9.73□□□□□ -0.85
SCFD1-222ENST00000556768 TEX13AQ9BXU3 409 aaPredicted RBP9.73□□□□□ -0.85
SCFD1-222ENST00000556768 CREBZFQ9NS37 354 aa9.73□□□□□ -0.85
SCFD1-222ENST00000556768 MMP10P09238 476 aa9.72□□□□□ -0.85
SCFD1-222ENST00000556768 SLC39A6Q13433 755 aa9.72□□□□□ -0.85
SCFD1-222ENST00000556768 RASEFQ8IZ41 740 aa9.72□□□□□ -0.85
SCFD1-222ENST00000556768 NLGN2Q8NFZ4 835 aa9.72□□□□□ -0.85
SCFD1-222ENST00000556768 RSPH6AQ9H0K4 717 aa9.72□□□□□ -0.85
SCFD1-222ENST00000556768 PARP3Q9Y6F1 533 aa9.72□□□□□ -0.85
SCFD1-222ENST00000556768 LY75O60449 1722 aa9.72□□□□□ -0.85
SCFD1-222ENST00000556768 RALBP1Q15311 655 aa9.72□□□□□ -0.85
SCFD1-222ENST00000556768 CCDC87Q9NVE4 849 aa9.72□□□□□ -0.85
SCFD1-222ENST00000556768 BTBD11A6QL63 1104 aa9.71□□□□□ -0.85
SCFD1-222ENST00000556768 DDX10Q13206 875 aaKnown RBP9.71□□□□□ -0.85
SCFD1-222ENST00000556768 ZNF790Q6PG37 636 aa9.71□□□□□ -0.85
SCFD1-222ENST00000556768 HOMEZQ8IX15 550 aa9.71□□□□□ -0.85
SCFD1-222ENST00000556768 DNAJC10Q8IXB1 793 aa9.71□□□□□ -0.85
SCFD1-222ENST00000556768 IL17REQ8NFR9 667 aa9.71□□□□□ -0.85
SCFD1-222ENST00000556768 PHACTR3Q96KR7 559 aa9.71□□□□□ -0.85
SCFD1-222ENST00000556768 HTATSF1O43719 755 aaKnown RBP9.7□□□□□ -0.86
SCFD1-222ENST00000556768 FMNL2Q96PY5 1086 aa9.7□□□□□ -0.86
SCFD1-222ENST00000556768 C4BP0C0L5 1744 aa9.7□□□□□ -0.86
SCFD1-222ENST00000556768 CYP19A1P11511 503 aaPredicted RBP9.7□□□□□ -0.86
SCFD1-222ENST00000556768 GYS1P13807 737 aa9.7□□□□□ -0.86
SCFD1-222ENST00000556768 ZEB1P37275 1124 aaPredicted RBP9.7□□□□□ -0.86
SCFD1-222ENST00000556768 TGFB2P61812 414 aa9.7□□□□□ -0.86
SCFD1-222ENST00000556768 INTS5Q6P9B9 1019 aaKnown RBP9.7□□□□□ -0.86
SCFD1-222ENST00000556768 SPDYE1Q8NFV5 336 aaPredicted RBP9.69□□□□□ -0.86
SCFD1-222ENST00000556768 WDR70Q9NW82 654 aa9.69□□□□□ -0.86
SCFD1-222ENST00000556768 MAPK8IP3Q9UPT6 1336 aa9.69□□□□□ -0.86
SCFD1-222ENST00000556768 TOGARAM1Q9Y4F4 1720 aa9.69□□□□□ -0.86
SCFD1-222ENST00000556768 C5P01031 1676 aa9.68□□□□□ -0.86
SCFD1-222ENST00000556768 A0A087WZG4 1122 aa9.68□□□□□ -0.86
SCFD1-222ENST00000556768 CANXP27824 592 aaKnown RBP9.68□□□□□ -0.86
SCFD1-222ENST00000556768 BRPF1P55201 1214 aaPredicted RBP9.68□□□□□ -0.86
SCFD1-222ENST00000556768 ZNF496Q96IT1 587 aaPredicted RBP9.68□□□□□ -0.86
SCFD1-222ENST00000556768 ZNF330Q9Y3S2 320 aaPredicted RBP9.68□□□□□ -0.86
SCFD1-222ENST00000556768 COL3A1P02461 1466 aaPredicted RBP9.67□□□□□ -0.86
SCFD1-222ENST00000556768 USP42Q9H9J4 1324 aaKnown RBP9.67□□□□□ -0.86
SCFD1-222ENST00000556768 ITGB4P16144 1822 aa9.67□□□□□ -0.86
SCFD1-222ENST00000556768 PYGBP11216 843 aa9.67□□□□□ -0.86
SCFD1-222ENST00000556768 TAF7Q15545 349 aaPredicted RBP9.67□□□□□ -0.86
SCFD1-222ENST00000556768 MCM10Q7L590 875 aa9.67□□□□□ -0.86
SCFD1-222ENST00000556768 SRP68Q9UHB9 627 aaKnown RBP9.67□□□□□ -0.86
SCFD1-222ENST00000556768 NARFQ9UHQ1 456 aa9.67□□□□□ -0.86
SCFD1-222ENST00000556768 SNRPA1P09661 255 aaKnown RBP9.66□□□□□ -0.86
SCFD1-222ENST00000556768 YBX3P16989 372 aaKnown RBP eCLIP9.66□□□□□ -0.865e-7■■■□□ 14.6
SCFD1-222ENST00000556768 USPL1Q5W0Q7 1092 aa9.66□□□□□ -0.86
SCFD1-222ENST00000556768 ZNF784Q8NCA9 323 aaPredicted RBP9.66□□□□□ -0.86
SCFD1-222ENST00000556768 PNISRQ8TF01 805 aaKnown RBP9.66□□□□□ -0.86
SCFD1-222ENST00000556768 ZBTB1Q9Y2K1 713 aa9.66□□□□□ -0.86
SCFD1-222ENST00000556768 QSER1Q2KHR3 1735 aa9.66□□□□□ -0.86
SCFD1-222ENST00000556768 SOS1Q07889 1333 aaPredicted RBP9.66□□□□□ -0.86
SCFD1-222ENST00000556768 CEMIPQ8WUJ3 1361 aa9.66□□□□□ -0.86
SCFD1-222ENST00000556768 HEG1Q9ULI3 1381 aa9.66□□□□□ -0.86
SCFD1-222ENST00000556768 NPHP1O15259 732 aa9.66□□□□□ -0.86
SCFD1-222ENST00000556768 A0A0G2JLW4 131 aa9.65□□□□□ -0.86
SCFD1-222ENST00000556768 IL6STP40189 918 aaPredicted RBP9.65□□□□□ -0.86
SCFD1-222ENST00000556768 WDR43Q15061 677 aaKnown RBP eCLIP9.65□□□□□ -0.86
SCFD1-222ENST00000556768 WWC3Q9ULE0 1092 aa9.65□□□□□ -0.86
SCFD1-222ENST00000556768 BCS1LQ9Y276 419 aa9.65□□□□□ -0.86
SCFD1-222ENST00000556768 EIF5P55010 431 aaKnown RBP9.64□□□□□ -0.87
SCFD1-222ENST00000556768 DCTN1Q14203 1278 aa9.64□□□□□ -0.87
SCFD1-222ENST00000556768 NFE2L2Q16236 605 aa9.64□□□□□ -0.87
SCFD1-222ENST00000556768 PIM2Q9P1W9 311 aa9.64□□□□□ -0.87
SCFD1-222ENST00000556768 MYBBP1AQ9BQG0 1328 aaKnown RBP9.64□□□□□ -0.87
SCFD1-222ENST00000556768 COL15A1P39059 1388 aa9.64□□□□□ -0.87
SCFD1-222ENST00000556768 MRC1P22897 1456 aa9.64□□□□□ -0.87
SCFD1-222ENST00000556768 PRR29P0C7W0 189 aa9.63□□□□□ -0.87
SCFD1-222ENST00000556768 TM4SF1P30408 202 aa9.63□□□□□ -0.87
SCFD1-222ENST00000556768 LMOD3Q0VAK6 560 aa9.63□□□□□ -0.87
SCFD1-222ENST00000556768 POLRMTO00411 1230 aaKnown RBP9.63□□□□□ -0.87
SCFD1-222ENST00000556768 A1BGP04217 495 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms