RNA–Protein interactions for RNA: ENST00000556310.1

SLIRP-205, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-205ENST00000556310 RTCBQ9Y3I0 505 aaKnown RBP15.29■□□□□ 0.04
SLIRP-205ENST00000556310 KDM3BQ7LBC6 1761 aa15.29■□□□□ 0.04
SLIRP-205ENST00000556310 CRKLP46109 303 aaKnown RBP15.28■□□□□ 0.04
SLIRP-205ENST00000556310 NFE2L2Q16236 605 aa15.28■□□□□ 0.04
SLIRP-205ENST00000556310 MCM10Q7L590 875 aa15.28■□□□□ 0.04
SLIRP-205ENST00000556310 VSIG10Q8N0Z9 540 aa15.28■□□□□ 0.04
SLIRP-205ENST00000556310 RPS6KA4O75676 772 aa15.27■□□□□ 0.04
SLIRP-205ENST00000556310 VASPP50552 380 aaPredicted RBP15.27■□□□□ 0.04
SLIRP-205ENST00000556310 MSL1Q68DK7 614 aa15.27■□□□□ 0.04
SLIRP-205ENST00000556310 ZNF790Q6PG37 636 aa15.27■□□□□ 0.04
SLIRP-205ENST00000556310 SMIM5Q71RC9 77 aa15.27■□□□□ 0.04
SLIRP-205ENST00000556310 DNAJC10Q8IXB1 793 aa15.27■□□□□ 0.04
SLIRP-205ENST00000556310 HEG1Q9ULI3 1381 aa15.26■□□□□ 0.03
SLIRP-205ENST00000556310 WDR43Q15061 677 aaKnown RBP eCLIP15.26■□□□□ 0.03
SLIRP-205ENST00000556310 BTBD11A6QL63 1104 aa15.25■□□□□ 0.03
SLIRP-205ENST00000556310 DCTN1Q14203 1278 aa15.25■□□□□ 0.03
SLIRP-205ENST00000556310 ZNF496Q96IT1 587 aaPredicted RBP15.25■□□□□ 0.03
SLIRP-205ENST00000556310 FHDC1Q9C0D6 1143 aaPredicted RBP15.25■□□□□ 0.03
SLIRP-205ENST00000556310 CCDC87Q9NVE4 849 aa15.25■□□□□ 0.03
SLIRP-205ENST00000556310 LAMB4A4D0S4 1761 aa15.25■□□□□ 0.03
SLIRP-205ENST00000556310 CYP19A1P11511 503 aaPredicted RBP15.24■□□□□ 0.03
SLIRP-205ENST00000556310 TRAPPC3LQ5T215 181 aa15.24■□□□□ 0.03
SLIRP-205ENST00000556310 INTS5Q6P9B9 1019 aaKnown RBP15.24■□□□□ 0.03
SLIRP-205ENST00000556310 FMNL2Q96PY5 1086 aa15.24■□□□□ 0.03
SLIRP-205ENST00000556310 ARHGEF1Q92888 912 aaKnown RBP15.23■□□□□ 0.03
SLIRP-205ENST00000556310 SYT17Q9BSW7 474 aa15.23■□□□□ 0.03
SLIRP-205ENST00000556310 SOS1Q07889 1333 aaPredicted RBP15.22■□□□□ 0.03
SLIRP-205ENST00000556310 SCN7AQ01118 1682 aa15.22■□□□□ 0.03
SLIRP-205ENST00000556310 KCNQ3O43525 872 aa15.21■□□□□ 0.03
SLIRP-205ENST00000556310 STARD3NLO95772 234 aa15.21■□□□□ 0.03
SLIRP-205ENST00000556310 RFC4P35249 363 aa15.21■□□□□ 0.03
SLIRP-205ENST00000556310 LMOD3Q0VAK6 560 aa15.21■□□□□ 0.03
SLIRP-205ENST00000556310 TAF7Q15545 349 aaPredicted RBP15.21■□□□□ 0.03
SLIRP-205ENST00000556310 RUNDC1Q96C34 613 aa15.21■□□□□ 0.03
SLIRP-205ENST00000556310 TEX13AQ9BXU3 409 aaPredicted RBP15.21■□□□□ 0.03
SLIRP-205ENST00000556310 ZBTB1Q9Y2K1 713 aa15.21■□□□□ 0.03
SLIRP-205ENST00000556310 COL15A1P39059 1388 aa15.21■□□□□ 0.02
SLIRP-205ENST00000556310 USP42Q9H9J4 1324 aaKnown RBP15.2■□□□□ 0.02
SLIRP-205ENST00000556310 KIF13BQ9NQT8 1826 aa15.2■□□□□ 0.02
SLIRP-205ENST00000556310 TMPOP42166 694 aaKnown RBP15.2■□□□□ 0.02
SLIRP-205ENST00000556310 CCDC146Q8IYE0 955 aa15.2■□□□□ 0.02
SLIRP-205ENST00000556310 ADAMTS8Q9UP79 889 aa15.2■□□□□ 0.02
SLIRP-205ENST00000556310 ANP32CO43423 234 aa15.19■□□□□ 0.02
SLIRP-205ENST00000556310 GYS1P13807 737 aa15.19■□□□□ 0.02
SLIRP-205ENST00000556310 RIPK4P57078 832 aa15.19■□□□□ 0.02
SLIRP-205ENST00000556310 KLHL34Q8N239 644 aa15.19■□□□□ 0.02
SLIRP-205ENST00000556310 NLGN1Q8N2Q7 840 aa15.19■□□□□ 0.02
SLIRP-205ENST00000556310 PNISRQ8TF01 805 aaKnown RBP15.19■□□□□ 0.02
SLIRP-205ENST00000556310 THUMPD2Q9BTF0 503 aaKnown RBP15.19■□□□□ 0.02
SLIRP-205ENST00000556310 BCORQ6W2J9 1755 aa15.19■□□□□ 0.02
SLIRP-205ENST00000556310 MMP10P09238 476 aa15.17■□□□□ 0.02
SLIRP-205ENST00000556310 SRP68Q9UHB9 627 aaKnown RBP15.17■□□□□ 0.02
SLIRP-205ENST00000556310 SNRPA1P09661 255 aaKnown RBP15.16■□□□□ 0.02
SLIRP-205ENST00000556310 CANXP27824 592 aaKnown RBP15.16■□□□□ 0.02
SLIRP-205ENST00000556310 EIF5P55010 431 aaKnown RBP15.16■□□□□ 0.02
SLIRP-205ENST00000556310 RRP7AQ9Y3A4 280 aaKnown RBP15.16■□□□□ 0.02
SLIRP-205ENST00000556310 CD2APQ9Y5K6 639 aa15.16■□□□□ 0.02
SLIRP-205ENST00000556310 KIAA1551Q9HCM1 1747 aa15.16■□□□□ 0.02
SLIRP-205ENST00000556310 C10orf71Q711Q0 1435 aa15.16■□□□□ 0.02
SLIRP-205ENST00000556310 ZPR1O75312 459 aa15.15■□□□□ 0.02
SLIRP-205ENST00000556310 NLGN2Q8NFZ4 835 aa15.15■□□□□ 0.02
SLIRP-205ENST00000556310 MIS18AQ9NYP9 233 aa15.15■□□□□ 0.02
SLIRP-205ENST00000556310 NARFQ9UHQ1 456 aa15.15■□□□□ 0.02
SLIRP-205ENST00000556310 A0A087WZG4 1122 aa15.14■□□□□ 0.01
SLIRP-205ENST00000556310 PRAMEF22A3QJZ6 481 aa15.14■□□□□ 0.01
SLIRP-205ENST00000556310 IL6STP40189 918 aaPredicted RBP15.14■□□□□ 0.01
SLIRP-205ENST00000556310 NEUROD2Q15784 382 aa15.14■□□□□ 0.01
SLIRP-205ENST00000556310 CCDC184Q52MB2 194 aa15.14■□□□□ 0.01
SLIRP-205ENST00000556310 REM2Q8IYK8 340 aaPredicted RBP15.14■□□□□ 0.01
SLIRP-205ENST00000556310 SPDYE1Q8NFV5 336 aaPredicted RBP15.14■□□□□ 0.01
SLIRP-205ENST00000556310 BABAM1Q9NWV8 329 aa15.14■□□□□ 0.01
SLIRP-205ENST00000556310 AFDNP55196 1824 aaKnown RBP15.14■□□□□ 0.01
SLIRP-205ENST00000556310 NRXN2Q9P2S2 1712 aa15.14■□□□□ 0.01
SLIRP-205ENST00000556310 A1BGP04217 495 aa15.13■□□□□ 0.01
SLIRP-205ENST00000556310 USPL1Q5W0Q7 1092 aa15.13■□□□□ 0.01
SLIRP-205ENST00000556310 TSPYL4Q9UJ04 414 aa15.13■□□□□ 0.01
SLIRP-205ENST00000556310 TRIM35Q9UPQ4 493 aa15.13■□□□□ 0.01
SLIRP-205ENST00000556310 USP16Q9Y5T5 823 aa15.13■□□□□ 0.01
SLIRP-205ENST00000556310 GOLGB1Q14789 3259 aaKnown RBP15.13■□□□□ 0.01
SLIRP-205ENST00000556310 CHD4Q14839 1912 aa15.12■□□□□ 0.01
SLIRP-205ENST00000556310 EIF4A1P60842 406 aaKnown RBP15.12■□□□□ 0.01
SLIRP-205ENST00000556310 MRS2Q9HD23 443 aa15.12■□□□□ 0.01
SLIRP-205ENST00000556310 PARP3Q9Y6F1 533 aa15.12■□□□□ 0.01
SLIRP-205ENST00000556310 N4BP2Q86UW6 1770 aaPredicted RBP15.11■□□□□ 0.01
SLIRP-205ENST00000556310 UTRNP46939 3433 aa15.11■□□□□ 0.01
SLIRP-205ENST00000556310 GIGYF1O75420 1035 aaPredicted RBP15.11■□□□□ 0.01
SLIRP-205ENST00000556310 DDR1Q08345 913 aa15.11■□□□□ 0.01
SLIRP-205ENST00000556310 BCL2L12Q9HB09 334 aa15.11■□□□□ 0.01
SLIRP-205ENST00000556310 RTN4Q9NQC3 1192 aaKnown RBP15.11■□□□□ 0.01
SLIRP-205ENST00000556310 CLEC11AQ9Y240 323 aa15.11■□□□□ 0.01
SLIRP-205ENST00000556310 ZNF330Q9Y3S2 320 aaPredicted RBP15.11■□□□□ 0.01
SLIRP-205ENST00000556310 BRCA1P38398 1863 aaKnown RBP15.11■□□□□ 0.01
SLIRP-205ENST00000556310 PXDNLA1KZ92 1463 aa15.1■□□□□ 0.01
SLIRP-205ENST00000556310 APAF1O14727 1248 aa15.1■□□□□ 0.01
SLIRP-205ENST00000556310 NPM2Q86SE8 214 aaKnown RBP15.1■□□□□ 0.01
SLIRP-205ENST00000556310 POLRMTO00411 1230 aaKnown RBP15.09■□□□□ 0.01
SLIRP-205ENST00000556310 TM4SF1P30408 202 aa15.09■□□□□ 0.01
SLIRP-205ENST00000556310 NBPF26B4DH59 902 aa15.08■□□□□ 0
SLIRP-205ENST00000556310 PIP4K2AP48426 406 aaPredicted RBP15.08■□□□□ 0
SLIRP-205ENST00000556310 NFIXQ14938 502 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms