RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 TNP2Q05952 138 aa8.87□□□□□ -0.99
SCFD1-218ENST00000556256 SLFNL1Q499Z3 407 aa8.87□□□□□ -0.99
SCFD1-218ENST00000556256 OXLD1Q5BKU9 147 aa8.87□□□□□ -0.99
SCFD1-218ENST00000556256 NIFKQ9BYG3 293 aaKnown RBP8.87□□□□□ -0.99
SCFD1-218ENST00000556256 CHIC2Q9UKJ5 165 aa8.87□□□□□ -0.99
SCFD1-218ENST00000556256 INHAP05111 366 aa8.86□□□□□ -0.99
SCFD1-218ENST00000556256 MAPTP10636 758 aaKnown RBP8.86□□□□□ -0.99
SCFD1-218ENST00000556256 CD33P20138 364 aa8.86□□□□□ -0.99
SCFD1-218ENST00000556256 ADH6P28332 368 aa8.86□□□□□ -0.99
SCFD1-218ENST00000556256 EIF4G2P78344 907 aaKnown RBP eCLIP8.86□□□□□ -0.99
SCFD1-218ENST00000556256 DOC2BQ14184 412 aa8.86□□□□□ -0.99
SCFD1-218ENST00000556256 FCHSD1Q86WN1 690 aa8.86□□□□□ -0.99
SCFD1-218ENST00000556256 SEMA6BQ9H3T3 888 aa8.86□□□□□ -0.99
SCFD1-218ENST00000556256 A0A1W2PNR3 127 aa8.85□□□□□ -0.99
SCFD1-218ENST00000556256 DCDC2BA2VCK2 349 aa8.85□□□□□ -0.99
SCFD1-218ENST00000556256 GDF10P55107 478 aa8.85□□□□□ -0.99
SCFD1-218ENST00000556256 FAM182BQ5T319 152 aa8.85□□□□□ -0.99
SCFD1-218ENST00000556256 SIRT1Q96EB6 747 aa8.85□□□□□ -0.99
SCFD1-218ENST00000556256 TBC1D2BQ9UPU7 963 aa8.85□□□□□ -0.99
SCFD1-218ENST00000556256 SMTNP53814 917 aa8.84□□□□□ -0.99
SCFD1-218ENST00000556256 ARSJQ5FYB0 599 aaPredicted RBP8.84□□□□□ -0.99
SCFD1-218ENST00000556256 PSMG3-AS1Q96PY0 264 aa8.84□□□□□ -0.99
SCFD1-218ENST00000556256 KHNYNO15037 678 aaKnown RBP8.83□□□□□ -1
SCFD1-218ENST00000556256 ZNF295-AS1Q8N0V1 137 aa8.83□□□□□ -1
SCFD1-218ENST00000556256 TRIM11Q96F44 468 aa8.83□□□□□ -1
SCFD1-218ENST00000556256 PLVAPQ9BX97 442 aa8.83□□□□□ -1
SCFD1-218ENST00000556256 AVENQ9NQS1 362 aaPredicted RBP8.83□□□□□ -1
SCFD1-218ENST00000556256 PCBP4P57723 403 aaKnown RBP8.82□□□□□ -1
SCFD1-218ENST00000556256 IRF5Q13568 498 aa8.82□□□□□ -1
SCFD1-218ENST00000556256 BCANQ96GW7 911 aa8.82□□□□□ -1
SCFD1-218ENST00000556256 ZIC5Q96T25 663 aa8.81□□□□□ -1
SCFD1-218ENST00000556256 SERTAD1Q9UHV2 236 aa8.81□□□□□ -1
SCFD1-218ENST00000556256 GATA4P43694 442 aa8.8□□□□□ -1
SCFD1-218ENST00000556256 NBPF1Q3BBV0 1214 aa8.8□□□□□ -1
SCFD1-218ENST00000556256 ZNF468Q5VIY5 522 aaPredicted RBP8.8□□□□□ -1
SCFD1-218ENST00000556256 PRR12Q9ULL5 1215 aa8.8□□□□□ -1
SCFD1-218ENST00000556256 IQSEC3Q9UPP2 1182 aaPredicted RBP8.8□□□□□ -1
SCFD1-218ENST00000556256 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.79□□□□□ -1
SCFD1-218ENST00000556256 CDK2AP1O14519 115 aa8.79□□□□□ -1
SCFD1-218ENST00000556256 SLC4A9Q96Q91 983 aa8.79□□□□□ -1
SCFD1-218ENST00000556256 KRTAP9-2Q9BYQ4 174 aa8.79□□□□□ -1
SCFD1-218ENST00000556256 STRN4Q9NRL3 753 aa8.79□□□□□ -1
SCFD1-218ENST00000556256 TMEM229AB2RXF0 380 aa8.78□□□□□ -1
SCFD1-218ENST00000556256 FAM157BP0CG42 384 aa8.78□□□□□ -1
SCFD1-218ENST00000556256 SPATA31C1P0DKV0 1188 aa8.78□□□□□ -1
SCFD1-218ENST00000556256 TATP17735 454 aaPredicted RBP8.78□□□□□ -1
SCFD1-218ENST00000556256 BRPF1P55201 1214 aaPredicted RBP8.78□□□□□ -1
SCFD1-218ENST00000556256 MAP7D1Q3KQU3 841 aa8.78□□□□□ -1
SCFD1-218ENST00000556256 ZMYM1Q5SVZ6 1142 aa8.78□□□□□ -1
SCFD1-218ENST00000556256 ZDHHC3Q9NYG2 299 aa8.78□□□□□ -1
SCFD1-218ENST00000556256 USP3Q9Y6I4 520 aa8.78□□□□□ -1
SCFD1-218ENST00000556256 A6NJY4 79 aa8.77□□□□□ -1.01
SCFD1-218ENST00000556256 VAC14Q08AM6 782 aa8.77□□□□□ -1.01
SCFD1-218ENST00000556256 MTFR1Q15390 333 aa8.77□□□□□ -1.01
SCFD1-218ENST00000556256 PRM3Q9NNZ6 103 aa8.77□□□□□ -1.01
SCFD1-218ENST00000556256 MARK1Q9P0L2 795 aa8.77□□□□□ -1.01
SCFD1-218ENST00000556256 PLPP7Q8NBV4 271 aa8.76□□□□□ -1.01
SCFD1-218ENST00000556256 CABP1Q9NZU7 370 aa8.76□□□□□ -1.01
SCFD1-218ENST00000556256 GJA3Q9Y6H8 435 aa8.76□□□□□ -1.01
SCFD1-218ENST00000556256 ELOA3CA0A087WX78 387 aaPredicted RBP8.75□□□□□ -1.01
SCFD1-218ENST00000556256 ELOA3DA6NLF2 546 aaPredicted RBP8.75□□□□□ -1.01
SCFD1-218ENST00000556256 EFSO43281 561 aa8.75□□□□□ -1.01
SCFD1-218ENST00000556256 RSPO4Q2I0M5 234 aaPredicted RBP8.75□□□□□ -1.01
SCFD1-218ENST00000556256 ELOA3BQ3SY89 546 aa8.75□□□□□ -1.01
SCFD1-218ENST00000556256 SAMD5Q5TGI4 173 aa8.75□□□□□ -1.01
SCFD1-218ENST00000556256 ELOA3Q8NG57 546 aa8.75□□□□□ -1.01
SCFD1-218ENST00000556256 PARP3Q9Y6F1 533 aa8.75□□□□□ -1.01
SCFD1-218ENST00000556256 KRTAP9-6A0A140TA67 174 aa8.74□□□□□ -1.01
SCFD1-218ENST00000556256 LAMC2Q13753 1193 aa8.74□□□□□ -1.01
SCFD1-218ENST00000556256 BICDL1Q6ZP65 573 aa8.74□□□□□ -1.01
SCFD1-218ENST00000556256 MDFIQ99750 246 aa8.74□□□□□ -1.01
SCFD1-218ENST00000556256 ALAS2P22557 587 aa8.73□□□□□ -1.01
SCFD1-218ENST00000556256 NKAPLQ5M9Q1 402 aa8.73□□□□□ -1.01
SCFD1-218ENST00000556256 SYT9Q86SS6 491 aa8.73□□□□□ -1.01
SCFD1-218ENST00000556256 PCDHGA11Q9Y5H2 935 aa8.73□□□□□ -1.01
SCFD1-218ENST00000556256 FOXD4L6Q3SYB3 417 aaPredicted RBP8.72□□□□□ -1.01
SCFD1-218ENST00000556256 FOXD4L3Q6VB84 417 aaPredicted RBP8.72□□□□□ -1.01
SCFD1-218ENST00000556256 TPSG1Q9NRR2 321 aa8.72□□□□□ -1.01
SCFD1-218ENST00000556256 SPDYE3A6NKU9 549 aa8.71□□□□□ -1.02
SCFD1-218ENST00000556256 TXLNAP40222 546 aa8.71□□□□□ -1.02
SCFD1-218ENST00000556256 PRRT3Q5FWE3 981 aa8.71□□□□□ -1.02
SCFD1-218ENST00000556256 GDPD2Q9HCC8 539 aa8.71□□□□□ -1.02
SCFD1-218ENST00000556256 COL9A3Q14050 684 aaPredicted RBP8.7□□□□□ -1.02
SCFD1-218ENST00000556256 ZDHHC1Q8WTX9 485 aa8.7□□□□□ -1.02
SCFD1-218ENST00000556256 ADARB2-AS1A8MUL3 147 aa8.69□□□□□ -1.02
SCFD1-218ENST00000556256 SIN3BO75182 1162 aa8.69□□□□□ -1.02
SCFD1-218ENST00000556256 APBA3O96018 575 aa8.69□□□□□ -1.02
SCFD1-218ENST00000556256 SEMA3FQ13275 785 aa8.69□□□□□ -1.02
SCFD1-218ENST00000556256 LRRC69Q6ZNQ3 347 aa8.69□□□□□ -1.02
SCFD1-218ENST00000556256 SCHIP1Q9P0W5 487 aaPredicted RBP8.69□□□□□ -1.02
SCFD1-218ENST00000556256 STARD13Q9Y3M8 1113 aa8.69□□□□□ -1.02
SCFD1-218ENST00000556256 FAM229AH3BQW9 127 aa8.68□□□□□ -1.02
SCFD1-218ENST00000556256 M0R082 166 aa8.68□□□□□ -1.02
SCFD1-218ENST00000556256 ABL2P42684 1182 aa8.68□□□□□ -1.02
SCFD1-218ENST00000556256 WASHC4Q2M389 1173 aa8.68□□□□□ -1.02
SCFD1-218ENST00000556256 ZNF417Q8TAU3 575 aa8.68□□□□□ -1.02
SCFD1-218ENST00000556256 C7orf43Q8WVR3 580 aa8.68□□□□□ -1.02
SCFD1-218ENST00000556256 L3MBTL2Q969R5 705 aa8.68□□□□□ -1.02
SCFD1-218ENST00000556256 ZNF587Q96SQ5 575 aaPredicted RBP8.68□□□□□ -1.02
SCFD1-218ENST00000556256 SCO2A0A1W2PP80 73 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms