RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 USP42Q9H9J4 1324 aaKnown RBP27.18■■□□□ 1.94
CCDC88C-210ENST00000555995 CD2APQ9Y5K6 639 aa27.18■■□□□ 1.94
CCDC88C-210ENST00000555995 ZBTB1Q9Y2K1 713 aa27.17■■□□□ 1.94
CCDC88C-210ENST00000555995 LAMB4A4D0S4 1761 aa27.17■■□□□ 1.94
CCDC88C-210ENST00000555995 ANP32CO43423 234 aa27.16■■□□□ 1.94
CCDC88C-210ENST00000555995 ZPR1O75312 459 aa27.16■■□□□ 1.94
CCDC88C-210ENST00000555995 GYS1P13807 737 aa27.16■■□□□ 1.94
CCDC88C-210ENST00000555995 RIPK4P57078 832 aa27.16■■□□□ 1.94
CCDC88C-210ENST00000555995 A0A087WZG4 1122 aa27.15■■□□□ 1.94
CCDC88C-210ENST00000555995 SNRPA1P09661 255 aaKnown RBP27.15■■□□□ 1.94
CCDC88C-210ENST00000555995 TMPOP42166 694 aaKnown RBP27.15■■□□□ 1.94
CCDC88C-210ENST00000555995 NPM2Q86SE8 214 aaKnown RBP27.15■■□□□ 1.94
CCDC88C-210ENST00000555995 MMP10P09238 476 aa27.14■■□□□ 1.94
CCDC88C-210ENST00000555995 ADAMTS8Q9UP79 889 aa27.13■■□□□ 1.93
CCDC88C-210ENST00000555995 KIF13BQ9NQT8 1826 aa27.12■■□□□ 1.93
CCDC88C-210ENST00000555995 KCNQ3O43525 872 aa27.12■■□□□ 1.93
CCDC88C-210ENST00000555995 BABAM1Q9NWV8 329 aa27.12■■□□□ 1.93
CCDC88C-210ENST00000555995 CANXP27824 592 aaKnown RBP27.11■■□□□ 1.93
CCDC88C-210ENST00000555995 IL6STP40189 918 aaPredicted RBP27.11■■□□□ 1.93
CCDC88C-210ENST00000555995 CCDC146Q8IYE0 955 aa27.11■■□□□ 1.93
CCDC88C-210ENST00000555995 NARFQ9UHQ1 456 aa27.11■■□□□ 1.93
CCDC88C-210ENST00000555995 PARP3Q9Y6F1 533 aa27.11■■□□□ 1.93
CCDC88C-210ENST00000555995 SCN7AQ01118 1682 aa27.1■■□□□ 1.93
CCDC88C-210ENST00000555995 EIF5P55010 431 aaKnown RBP27.09■■□□□ 1.93
CCDC88C-210ENST00000555995 SRP68Q9UHB9 627 aaKnown RBP27.09■■□□□ 1.93
CCDC88C-210ENST00000555995 USPL1Q5W0Q7 1092 aa27.07■■□□□ 1.92
CCDC88C-210ENST00000555995 NLGN2Q8NFZ4 835 aa27.07■■□□□ 1.92
CCDC88C-210ENST00000555995 THUMPD2Q9BTF0 503 aaKnown RBP27.06■■□□□ 1.92
CCDC88C-210ENST00000555995 C10orf71Q711Q0 1435 aa27.06■■□□□ 1.92
CCDC88C-210ENST00000555995 FKBP8Q14318 412 aa27.05■■□□□ 1.92
CCDC88C-210ENST00000555995 GPR162Q16538 588 aa27.05■■□□□ 1.92
CCDC88C-210ENST00000555995 TSPYL4Q9UJ04 414 aa27.05■■□□□ 1.92
CCDC88C-210ENST00000555995 USP16Q9Y5T5 823 aa27.05■■□□□ 1.92
CCDC88C-210ENST00000555995 BCORQ6W2J9 1755 aa27.04■■□□□ 1.92
CCDC88C-210ENST00000555995 NEUROD2Q15784 382 aa27.04■■□□□ 1.92
CCDC88C-210ENST00000555995 MIS18AQ9NYP9 233 aa27.04■■□□□ 1.92
CCDC88C-210ENST00000555995 ZNF330Q9Y3S2 320 aaPredicted RBP27.04■■□□□ 1.92
CCDC88C-210ENST00000555995 CHD4Q14839 1912 aa27.04■■□□□ 1.92
CCDC88C-210ENST00000555995 EIF4A1P60842 406 aaKnown RBP27.03■■□□□ 1.92
CCDC88C-210ENST00000555995 RRP7AQ9Y3A4 280 aaKnown RBP27.03■■□□□ 1.92
CCDC88C-210ENST00000555995 A1BGP04217 495 aa27.02■■□□□ 1.92
CCDC88C-210ENST00000555995 TGFB2P61812 414 aa27.01■■□□□ 1.91
CCDC88C-210ENST00000555995 GIGYF1O75420 1035 aaPredicted RBP27■■□□□ 1.91
CCDC88C-210ENST00000555995 CALD1Q05682 793 aaKnown RBP27■■□□□ 1.91
CCDC88C-210ENST00000555995 PELP1Q8IZL8 1130 aaKnown RBP27■■□□□ 1.91
CCDC88C-210ENST00000555995 MRS2Q9HD23 443 aa27■■□□□ 1.91
CCDC88C-210ENST00000555995 NRXN2Q9P2S2 1712 aa26.99■■□□□ 1.91
CCDC88C-210ENST00000555995 GRIN3BO60391 1043 aa26.99■■□□□ 1.91
CCDC88C-210ENST00000555995 TM4SF1P30408 202 aa26.99■■□□□ 1.91
CCDC88C-210ENST00000555995 ERBB4Q15303 1308 aa26.98■■□□□ 1.91
CCDC88C-210ENST00000555995 PRAMEF22A3QJZ6 481 aa26.98■■□□□ 1.91
CCDC88C-210ENST00000555995 POLRMTO00411 1230 aaKnown RBP26.98■■□□□ 1.91
CCDC88C-210ENST00000555995 RGL2O15211 777 aa26.98■■□□□ 1.91
CCDC88C-210ENST00000555995 TRIM35Q9UPQ4 493 aa26.98■■□□□ 1.91
CCDC88C-210ENST00000555995 KIAA1551Q9HCM1 1747 aa26.98■■□□□ 1.91
CCDC88C-210ENST00000555995 AFDNP55196 1824 aaKnown RBP26.97■■□□□ 1.91
CCDC88C-210ENST00000555995 DDR1Q08345 913 aa26.97■■□□□ 1.91
CCDC88C-210ENST00000555995 DZIP3Q86Y13 1208 aaKnown RBP26.97■■□□□ 1.91
CCDC88C-210ENST00000555995 ZNF652Q9Y2D9 606 aa26.97■■□□□ 1.91
CCDC88C-210ENST00000555995 PXDNLA1KZ92 1463 aa26.96■■□□□ 1.91
CCDC88C-210ENST00000555995 NFIXQ14938 502 aa26.96■■□□□ 1.91
CCDC88C-210ENST00000555995 BCL2L12Q9HB09 334 aa26.96■■□□□ 1.91
CCDC88C-210ENST00000555995 APAF1O14727 1248 aa26.95■■□□□ 1.9
CCDC88C-210ENST00000555995 TBC1D2BQ9UPU7 963 aa26.95■■□□□ 1.9
CCDC88C-210ENST00000555995 N4BP2Q86UW6 1770 aaPredicted RBP26.94■■□□□ 1.9
CCDC88C-210ENST00000555995 CLEC4GQ6UXB4 293 aa26.94■■□□□ 1.9
CCDC88C-210ENST00000555995 CARMIL3Q8ND23 1372 aa26.94■■□□□ 1.9
CCDC88C-210ENST00000555995 CHL1O00533 1208 aa26.93■■□□□ 1.9
CCDC88C-210ENST00000555995 CAMTA2O94983 1202 aa26.93■■□□□ 1.9
CCDC88C-210ENST00000555995 YY1P25490 414 aa26.93■■□□□ 1.9
CCDC88C-210ENST00000555995 BRCA1P38398 1863 aaKnown RBP26.92■■□□□ 1.9
CCDC88C-210ENST00000555995 CFAP44Q96MT7 982 aa26.92■■□□□ 1.9
CCDC88C-210ENST00000555995 NBPF26B4DH59 902 aa26.91■■□□□ 1.9
CCDC88C-210ENST00000555995 SERPINB2P05120 415 aa26.91■■□□□ 1.9
CCDC88C-210ENST00000555995 CCDC184Q52MB2 194 aa26.91■■□□□ 1.9
CCDC88C-210ENST00000555995 NBPF10Q6P3W6 841 aaKnown RBP26.91■■□□□ 1.9
CCDC88C-210ENST00000555995 NBPF15Q8N660 670 aa26.91■■□□□ 1.9
CCDC88C-210ENST00000555995 LAS1LQ9Y4W2 734 aaKnown RBP26.9■■□□□ 1.9
CCDC88C-210ENST00000555995 HOXB7P09629 217 aa26.89■■□□□ 1.9
CCDC88C-210ENST00000555995 YBX3P16989 372 aaKnown RBP eCLIP26.89■■□□□ 1.9
CCDC88C-210ENST00000555995 PIP4K2AP48426 406 aaPredicted RBP26.89■■□□□ 1.9
CCDC88C-210ENST00000555995 NCBP3Q53F19 620 aaKnown RBP26.89■■□□□ 1.9
CCDC88C-210ENST00000555995 SETDB2Q96T68 719 aa26.89■■□□□ 1.9
CCDC88C-210ENST00000555995 GNAI1P63096 354 aa26.88■■□□□ 1.89
CCDC88C-210ENST00000555995 TBC1D9BQ66K14 1250 aa26.88■■□□□ 1.89
CCDC88C-210ENST00000555995 BICDL1Q6ZP65 573 aa26.88■■□□□ 1.89
CCDC88C-210ENST00000555995 IFT57Q9NWB7 429 aa26.88■■□□□ 1.89
CCDC88C-210ENST00000555995 KIF6Q6ZMV9 814 aa26.87■■□□□ 1.89
CCDC88C-210ENST00000555995 DLEC1Q9Y238 1755 aa26.86■■□□□ 1.89
CCDC88C-210ENST00000555995 ARFGEF1Q9Y6D6 1849 aa26.86■■□□□ 1.89
CCDC88C-210ENST00000555995 CCDC27Q2M243 656 aa26.86■■□□□ 1.89
CCDC88C-210ENST00000555995 PDZRN3Q9UPQ7 1066 aa26.86■■□□□ 1.89
CCDC88C-210ENST00000555995 A0A0G2JLW4 131 aa26.85■■□□□ 1.89
CCDC88C-210ENST00000555995 DPEP1P16444 411 aa26.85■■□□□ 1.89
CCDC88C-210ENST00000555995 ERVV-1B6SEH8 477 aa26.84■■□□□ 1.89
CCDC88C-210ENST00000555995 NPHP1O15259 732 aa26.84■■□□□ 1.89
CCDC88C-210ENST00000555995 PIM2Q9P1W9 311 aa26.84■■□□□ 1.89
CCDC88C-210ENST00000555995 NUP98P52948 1817 aa26.83■■□□□ 1.89
CCDC88C-210ENST00000555995 MYL6BP14649 208 aa26.83■■□□□ 1.89
CCDC88C-210ENST00000555995 EIF2S2P20042 333 aaKnown RBP26.83■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms