RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 TTC31Q49AM3 519 aaPredicted RBP20.31■□□□□ 0.84
SYNE3-204ENST00000555759 SIL1Q9H173 461 aa20.31■□□□□ 0.84
SYNE3-204ENST00000555759 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.31■□□□□ 0.84
SYNE3-204ENST00000555759 ARHGAP5Q13017 1502 aa20.31■□□□□ 0.84
SYNE3-204ENST00000555759 PSME1Q06323 249 aa20.31■□□□□ 0.84
SYNE3-204ENST00000555759 USP48Q86UV5 1035 aa20.31■□□□□ 0.84
SYNE3-204ENST00000555759 PHAXQ9H814 394 aaKnown RBP20.31■□□□□ 0.84
SYNE3-204ENST00000555759 BMP2KQ9NSY1 1161 aaPredicted RBP20.31■□□□□ 0.84
SYNE3-204ENST00000555759 GIGYF2Q6Y7W6 1299 aaKnown RBP20.31■□□□□ 0.84
SYNE3-204ENST00000555759 FYB1O15117 783 aa20.31■□□□□ 0.84
SYNE3-204ENST00000555759 RSPH14Q9UHP6 348 aa20.3■□□□□ 0.84
SYNE3-204ENST00000555759 NLRP6P59044 892 aa20.3■□□□□ 0.84
SYNE3-204ENST00000555759 TROQ12816 1431 aaPredicted RBP20.3■□□□□ 0.84
SYNE3-204ENST00000555759 PTPRCP08575 1304 aa20.3■□□□□ 0.84
SYNE3-204ENST00000555759 GCOM1H8Y6P7 765 aaPredicted RBP20.3■□□□□ 0.84
SYNE3-204ENST00000555759 MYZAPP0CAP1 466 aa20.3■□□□□ 0.84
SYNE3-204ENST00000555759 IFFO1Q0D2I5 559 aa20.3■□□□□ 0.84
SYNE3-204ENST00000555759 CTDP1Q9Y5B0 961 aaPredicted RBP20.3■□□□□ 0.84
SYNE3-204ENST00000555759 TUBBP07437 444 aa20.3■□□□□ 0.84
SYNE3-204ENST00000555759 CKAP4Q07065 602 aaKnown RBP20.29■□□□□ 0.84
SYNE3-204ENST00000555759 SPECC1LQ69YQ0 1117 aa20.29■□□□□ 0.84
SYNE3-204ENST00000555759 NUP88Q99567 741 aaPredicted RBP20.29■□□□□ 0.84
SYNE3-204ENST00000555759 CNNM3Q8NE01 707 aa20.29■□□□□ 0.84
SYNE3-204ENST00000555759 MYRIPQ8NFW9 859 aa20.29■□□□□ 0.84
SYNE3-204ENST00000555759 AQRO60306 1485 aaKnown RBP eCLIP20.29■□□□□ 0.845e-6■■□□□ 14.3
SYNE3-204ENST00000555759 RPGRIP1LQ68CZ1 1315 aa20.29■□□□□ 0.84
SYNE3-204ENST00000555759 ANO6Q4KMQ2 910 aa20.29■□□□□ 0.84
SYNE3-204ENST00000555759 PRAM1Q96QH2 718 aa20.29■□□□□ 0.84
SYNE3-204ENST00000555759 ALS2CR12Q96Q35 445 aa20.29■□□□□ 0.84
SYNE3-204ENST00000555759 CAPN2P17655 700 aa20.28■□□□□ 0.84
SYNE3-204ENST00000555759 CEP112Q8N8E3 955 aa20.28■□□□□ 0.84
SYNE3-204ENST00000555759 ARHGAP45Q92619 1136 aa20.28■□□□□ 0.84
SYNE3-204ENST00000555759 DNAI1Q9UI46 699 aa20.28■□□□□ 0.84
SYNE3-204ENST00000555759 TFIP11Q9UBB9 837 aaKnown RBP20.28■□□□□ 0.84
SYNE3-204ENST00000555759 ANKRD62A6NC57 917 aa20.28■□□□□ 0.84
SYNE3-204ENST00000555759 CTAGE15A4D2H0 777 aa20.27■□□□□ 0.84
SYNE3-204ENST00000555759 CTAGE8P0CG41 777 aa20.27■□□□□ 0.84
SYNE3-204ENST00000555759 CTAGE6Q86UF2 777 aa20.27■□□□□ 0.84
SYNE3-204ENST00000555759 CTAGE4Q8IX94 777 aa20.27■□□□□ 0.84
SYNE3-204ENST00000555759 HSPA4P34932 840 aa20.27■□□□□ 0.84
SYNE3-204ENST00000555759 NUP133Q8WUM0 1156 aa20.27■□□□□ 0.84
SYNE3-204ENST00000555759 PCDHB15Q9Y5E8 787 aa20.27■□□□□ 0.84
SYNE3-204ENST00000555759 IBSPP21815 317 aaPredicted RBP20.27■□□□□ 0.84
SYNE3-204ENST00000555759 CCDC141Q6ZP82 1450 aa20.27■□□□□ 0.84
SYNE3-204ENST00000555759 CCDC91Q7Z6B0 441 aa20.27■□□□□ 0.84
SYNE3-204ENST00000555759 DHX37Q8IY37 1157 aaKnown RBP20.27■□□□□ 0.84
SYNE3-204ENST00000555759 GOLGA1Q92805 767 aa20.26■□□□□ 0.83
SYNE3-204ENST00000555759 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.26■□□□□ 0.836e-9■■■■■ 134.6
SYNE3-204ENST00000555759 CABP1Q9NZU7 370 aa20.26■□□□□ 0.83
SYNE3-204ENST00000555759 CDK19Q9BWU1 502 aa20.26■□□□□ 0.83
SYNE3-204ENST00000555759 HSF2BPO75031 334 aa20.26■□□□□ 0.83
SYNE3-204ENST00000555759 UBAC1Q9BSL1 405 aa20.26■□□□□ 0.83
SYNE3-204ENST00000555759 KANK3Q6NY19 840 aa20.26■□□□□ 0.83
SYNE3-204ENST00000555759 ERO1AQ96HE7 468 aa20.26■□□□□ 0.83
SYNE3-204ENST00000555759 HMG20BQ9P0W2 317 aa20.25■□□□□ 0.83
SYNE3-204ENST00000555759 FGFR1OPO95684 399 aaKnown RBP20.25■□□□□ 0.83
SYNE3-204ENST00000555759 KLHL10Q6JEL2 608 aa20.25■□□□□ 0.83
SYNE3-204ENST00000555759 CNPY2Q9Y2B0 182 aa20.25■□□□□ 0.83
SYNE3-204ENST00000555759 OPA1O60313 960 aa20.24■□□□□ 0.83
SYNE3-204ENST00000555759 EVI5LQ96CN4 794 aa20.24■□□□□ 0.83
SYNE3-204ENST00000555759 SOGA3Q5TF21 947 aa20.24■□□□□ 0.83
SYNE3-204ENST00000555759 A0A1B0GUL7 405 aa20.24■□□□□ 0.83
SYNE3-204ENST00000555759 EBAG9O00559 213 aa20.24■□□□□ 0.83
SYNE3-204ENST00000555759 NBPF11Q86T75 865 aa20.24■□□□□ 0.83
SYNE3-204ENST00000555759 INTS4Q96HW7 963 aaKnown RBP20.24■□□□□ 0.83
SYNE3-204ENST00000555759 GNL3LQ9NVN8 582 aaKnown RBP20.24■□□□□ 0.83
SYNE3-204ENST00000555759 CCDC196A0A1B0GTZ2 297 aa20.24■□□□□ 0.83
SYNE3-204ENST00000555759 EVA1CP58658 441 aa20.24■□□□□ 0.83
SYNE3-204ENST00000555759 ZNF445P59923 1031 aa20.24■□□□□ 0.83
SYNE3-204ENST00000555759 PIBF1Q8WXW3 757 aa20.23■□□□□ 0.83
SYNE3-204ENST00000555759 F13A1P00488 732 aa20.23■□□□□ 0.83
SYNE3-204ENST00000555759 VPS36Q86VN1 386 aa20.23■□□□□ 0.83
SYNE3-204ENST00000555759 MICALL1Q8N3F8 863 aa20.23■□□□□ 0.83
SYNE3-204ENST00000555759 CPLX3Q8WVH0 158 aa20.23■□□□□ 0.83
SYNE3-204ENST00000555759 NSD2O96028 1365 aa20.23■□□□□ 0.83
SYNE3-204ENST00000555759 MCM6Q14566 821 aa20.23■□□□□ 0.83
SYNE3-204ENST00000555759 STK11IPQ8N1F8 1099 aa20.23■□□□□ 0.83
SYNE3-204ENST00000555759 UBASH3AP57075 661 aa20.23■□□□□ 0.83
SYNE3-204ENST00000555759 CNNM1Q9NRU3 951 aa20.23■□□□□ 0.83
SYNE3-204ENST00000555759 PTPN23Q9H3S7 1636 aa20.23■□□□□ 0.83
SYNE3-204ENST00000555759 MAPKBP1O60336 1514 aa20.22■□□□□ 0.83
SYNE3-204ENST00000555759 SPECC1Q5M775 1068 aa20.22■□□□□ 0.83
SYNE3-204ENST00000555759 CEP126Q9P2H0 1117 aa20.22■□□□□ 0.83
SYNE3-204ENST00000555759 PIP4K2BP78356 416 aa20.22■□□□□ 0.83
SYNE3-204ENST00000555759 CACNA2D4Q7Z3S7 1137 aa20.22■□□□□ 0.83
SYNE3-204ENST00000555759 TMX1Q9H3N1 280 aa20.22■□□□□ 0.83
SYNE3-204ENST00000555759 SYNJ2O15056 1496 aa20.22■□□□□ 0.83
SYNE3-204ENST00000555759 TYRO3Q06418 890 aa20.22■□□□□ 0.83
SYNE3-204ENST00000555759 PYM1Q9BRP8 204 aaKnown RBP20.22■□□□□ 0.83
SYNE3-204ENST00000555759 CCDC113Q9H0I3 377 aa20.22■□□□□ 0.83
SYNE3-204ENST00000555759 FKBP4Q02790 459 aaKnown RBP eCLIP20.22■□□□□ 0.83
SYNE3-204ENST00000555759 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.22■□□□□ 0.83
SYNE3-204ENST00000555759 SDSP20132 328 aa20.21■□□□□ 0.83
SYNE3-204ENST00000555759 CCDC102BQ68D86 513 aa20.21■□□□□ 0.83
SYNE3-204ENST00000555759 BIN1O00499 593 aa20.21■□□□□ 0.83
SYNE3-204ENST00000555759 BCCIPQ9P287 314 aaKnown RBP eCLIP20.21■□□□□ 0.83
SYNE3-204ENST00000555759 KIF6Q6ZMV9 814 aa20.2■□□□□ 0.82
SYNE3-204ENST00000555759 ZSWIM4Q9H7M6 989 aa20.2■□□□□ 0.82
SYNE3-204ENST00000555759 MTMR7Q9Y216 660 aa20.2■□□□□ 0.82
SYNE3-204ENST00000555759 PTGS1P23219 599 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms