RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 TAF7Q15545 349 aaPredicted RBP18.1■□□□□ 0.49
SHMT2-219ENST00000555563 KLHL34Q8N239 644 aa18.1■□□□□ 0.49
SHMT2-219ENST00000555563 RUNDC1Q96C34 613 aa18.1■□□□□ 0.49
SHMT2-219ENST00000555563 RRP7AQ9Y3A4 280 aaKnown RBP18.1■□□□□ 0.49
SHMT2-219ENST00000555563 LAMB4A4D0S4 1761 aa18.09■□□□□ 0.49
SHMT2-219ENST00000555563 COL15A1P39059 1388 aa18.09■□□□□ 0.49
SHMT2-219ENST00000555563 RFC4P35249 363 aa18.09■□□□□ 0.49
SHMT2-219ENST00000555563 USP42Q9H9J4 1324 aaKnown RBP18.08■□□□□ 0.49
SHMT2-219ENST00000555563 STARD3NLO95772 234 aa18.08■□□□□ 0.48
SHMT2-219ENST00000555563 MIS18AQ9NYP9 233 aa18.08■□□□□ 0.48
SHMT2-219ENST00000555563 SRP68Q9UHB9 627 aaKnown RBP18.08■□□□□ 0.48
SHMT2-219ENST00000555563 GYS1P13807 737 aa18.07■□□□□ 0.48
SHMT2-219ENST00000555563 CANXP27824 592 aaKnown RBP18.07■□□□□ 0.48
SHMT2-219ENST00000555563 LMOD3Q0VAK6 560 aa18.07■□□□□ 0.48
SHMT2-219ENST00000555563 TEX13AQ9BXU3 409 aaPredicted RBP18.07■□□□□ 0.48
SHMT2-219ENST00000555563 PRAMEF22A3QJZ6 481 aa18.06■□□□□ 0.48
SHMT2-219ENST00000555563 MMP10P09238 476 aa18.06■□□□□ 0.48
SHMT2-219ENST00000555563 NEUROD2Q15784 382 aa18.06■□□□□ 0.48
SHMT2-219ENST00000555563 ZNF784Q8NCA9 323 aaPredicted RBP18.06■□□□□ 0.48
SHMT2-219ENST00000555563 PNISRQ8TF01 805 aaKnown RBP18.06■□□□□ 0.48
SHMT2-219ENST00000555563 SCN7AQ01118 1682 aa18.06■□□□□ 0.48
SHMT2-219ENST00000555563 SNRPA1P09661 255 aaKnown RBP18.05■□□□□ 0.48
SHMT2-219ENST00000555563 NLGN1Q8N2Q7 840 aa18.04■□□□□ 0.48
SHMT2-219ENST00000555563 NLGN2Q8NFZ4 835 aa18.04■□□□□ 0.48
SHMT2-219ENST00000555563 USP16Q9Y5T5 823 aa18.04■□□□□ 0.48
SHMT2-219ENST00000555563 UTRNP46939 3433 aa18.04■□□□□ 0.48
SHMT2-219ENST00000555563 A1BGP04217 495 aa18.03■□□□□ 0.48
SHMT2-219ENST00000555563 FKBP8Q14318 412 aa18.03■□□□□ 0.48
SHMT2-219ENST00000555563 MRS2Q9HD23 443 aa18.03■□□□□ 0.48
SHMT2-219ENST00000555563 TRIM35Q9UPQ4 493 aa18.03■□□□□ 0.48
SHMT2-219ENST00000555563 EIF5P55010 431 aaKnown RBP18.02■□□□□ 0.48
SHMT2-219ENST00000555563 USPL1Q5W0Q7 1092 aa18.02■□□□□ 0.48
SHMT2-219ENST00000555563 KIF13BQ9NQT8 1826 aa18.02■□□□□ 0.47
SHMT2-219ENST00000555563 ZPR1O75312 459 aa18.01■□□□□ 0.47
SHMT2-219ENST00000555563 PIP4K2AP48426 406 aaPredicted RBP18.01■□□□□ 0.47
SHMT2-219ENST00000555563 EIF4A1P60842 406 aaKnown RBP18.01■□□□□ 0.47
SHMT2-219ENST00000555563 NARFQ9UHQ1 456 aa18.01■□□□□ 0.47
SHMT2-219ENST00000555563 TSPYL4Q9UJ04 414 aa18.01■□□□□ 0.47
SHMT2-219ENST00000555563 ZNF330Q9Y3S2 320 aaPredicted RBP18.01■□□□□ 0.47
SHMT2-219ENST00000555563 CD2APQ9Y5K6 639 aa18.01■□□□□ 0.47
SHMT2-219ENST00000555563 BCORQ6W2J9 1755 aa18.01■□□□□ 0.47
SHMT2-219ENST00000555563 C10orf71Q711Q0 1435 aa18■□□□□ 0.47
SHMT2-219ENST00000555563 APAF1O14727 1248 aa18■□□□□ 0.47
SHMT2-219ENST00000555563 IL6STP40189 918 aaPredicted RBP18■□□□□ 0.47
SHMT2-219ENST00000555563 KIAA1551Q9HCM1 1747 aa17.99■□□□□ 0.47
SHMT2-219ENST00000555563 GIGYF1O75420 1035 aaPredicted RBP17.99■□□□□ 0.47
SHMT2-219ENST00000555563 DDR1Q08345 913 aa17.99■□□□□ 0.47
SHMT2-219ENST00000555563 BCL2L12Q9HB09 334 aa17.99■□□□□ 0.47
SHMT2-219ENST00000555563 A0A087WZG4 1122 aa17.98■□□□□ 0.47
SHMT2-219ENST00000555563 BABAM1Q9NWV8 329 aa17.98■□□□□ 0.47
SHMT2-219ENST00000555563 PARP3Q9Y6F1 533 aa17.98■□□□□ 0.47
SHMT2-219ENST00000555563 NBPF26B4DH59 902 aa17.97■□□□□ 0.47
SHMT2-219ENST00000555563 NBPF10Q6P3W6 841 aaKnown RBP17.97■□□□□ 0.47
SHMT2-219ENST00000555563 NBPF15Q8N660 670 aa17.97■□□□□ 0.47
SHMT2-219ENST00000555563 NRXN2Q9P2S2 1712 aa17.96■□□□□ 0.47
SHMT2-219ENST00000555563 GPR162Q16538 588 aa17.96■□□□□ 0.47
SHMT2-219ENST00000555563 TBC1D2BQ9UPU7 963 aa17.96■□□□□ 0.47
SHMT2-219ENST00000555563 PXDNLA1KZ92 1463 aa17.95■□□□□ 0.46
SHMT2-219ENST00000555563 POLRMTO00411 1230 aaKnown RBP17.95■□□□□ 0.46
SHMT2-219ENST00000555563 CHL1O00533 1208 aa17.95■□□□□ 0.46
SHMT2-219ENST00000555563 TM4SF1P30408 202 aa17.95■□□□□ 0.46
SHMT2-219ENST00000555563 NFIXQ14938 502 aa17.95■□□□□ 0.46
SHMT2-219ENST00000555563 LAS1LQ9Y4W2 734 aaKnown RBP17.95■□□□□ 0.46
SHMT2-219ENST00000555563 AFDNP55196 1824 aaKnown RBP17.95■□□□□ 0.46
SHMT2-219ENST00000555563 CAMTA2O94983 1202 aa17.94■□□□□ 0.46
SHMT2-219ENST00000555563 NPM2Q86SE8 214 aaKnown RBP17.94■□□□□ 0.46
SHMT2-219ENST00000555563 DZIP3Q86Y13 1208 aaKnown RBP17.94■□□□□ 0.46
SHMT2-219ENST00000555563 PELP1Q8IZL8 1130 aaKnown RBP17.94■□□□□ 0.46
SHMT2-219ENST00000555563 N4BP2Q86UW6 1770 aaPredicted RBP17.94■□□□□ 0.46
SHMT2-219ENST00000555563 SENP3-EIF4A1A0A087X0R7 540 aa17.93■□□□□ 0.46
SHMT2-219ENST00000555563 YBX3P16989 372 aaKnown RBP eCLIP17.92■□□□□ 0.463e-9■□□□□ 8.7
SHMT2-219ENST00000555563 C1QTNF8P60827 252 aa17.92■□□□□ 0.46
SHMT2-219ENST00000555563 KRT24Q2M2I5 525 aa17.92■□□□□ 0.46
SHMT2-219ENST00000555563 TBC1D9BQ66K14 1250 aa17.92■□□□□ 0.46
SHMT2-219ENST00000555563 BICDL1Q6ZP65 573 aa17.91■□□□□ 0.46
SHMT2-219ENST00000555563 CFAP44Q96MT7 982 aa17.91■□□□□ 0.46
SHMT2-219ENST00000555563 MBIPQ9NS73 344 aa17.9■□□□□ 0.46
SHMT2-219ENST00000555563 WWC3Q9ULE0 1092 aa17.9■□□□□ 0.46
SHMT2-219ENST00000555563 ERBB4Q15303 1308 aa17.9■□□□□ 0.46
SHMT2-219ENST00000555563 BRCA1P38398 1863 aaKnown RBP17.9■□□□□ 0.46
SHMT2-219ENST00000555563 SERPINB2P05120 415 aa17.89■□□□□ 0.45
SHMT2-219ENST00000555563 ZNF853P0CG23 659 aa17.89■□□□□ 0.45
SHMT2-219ENST00000555563 MYL6BP14649 208 aa17.89■□□□□ 0.45
SHMT2-219ENST00000555563 CALD1Q05682 793 aaKnown RBP17.89■□□□□ 0.45
SHMT2-219ENST00000555563 IFT57Q9NWB7 429 aa17.89■□□□□ 0.45
SHMT2-219ENST00000555563 CARMIL3Q8ND23 1372 aa17.89■□□□□ 0.45
SHMT2-219ENST00000555563 EIF2S2P20042 333 aaKnown RBP17.88■□□□□ 0.45
SHMT2-219ENST00000555563 TGFB2P61812 414 aa17.88■□□□□ 0.45
SHMT2-219ENST00000555563 NGEFQ8N5V2 710 aa17.88■□□□□ 0.45
SHMT2-219ENST00000555563 A0A0G2JLW4 131 aa17.87■□□□□ 0.45
SHMT2-219ENST00000555563 DPEP1P16444 411 aa17.87■□□□□ 0.45
SHMT2-219ENST00000555563 CCDC27Q2M243 656 aa17.87■□□□□ 0.45
SHMT2-219ENST00000555563 FAM9BQ8IZU0 186 aa17.87■□□□□ 0.45
SHMT2-219ENST00000555563 ZNF652Q9Y2D9 606 aa17.87■□□□□ 0.45
SHMT2-219ENST00000555563 DLEC1Q9Y238 1755 aa17.86■□□□□ 0.45
SHMT2-219ENST00000555563 ANKRD31Q8N7Z5 1873 aa17.86■□□□□ 0.45
SHMT2-219ENST00000555563 GNAI1P63096 354 aa17.86■□□□□ 0.45
SHMT2-219ENST00000555563 PDIA6Q15084 440 aa17.86■□□□□ 0.45
SHMT2-219ENST00000555563 PROSER3Q2NL68 480 aa17.86■□□□□ 0.45
SHMT2-219ENST00000555563 LRP10Q7Z4F1 713 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms