RNA–Protein interactions for RNA: ENST00000555386.5

PSEN1-213, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,484 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-213ENST00000555386 KRT24Q2M2I5 525 aa12.78□□□□□ -0.36
PSEN1-213ENST00000555386 PDGFDQ9GZP0 370 aaPredicted RBP12.78□□□□□ -0.36
PSEN1-213ENST00000555386 HEG1Q9ULI3 1381 aa12.78□□□□□ -0.36
PSEN1-213ENST00000555386 ZNF330Q9Y3S2 320 aaPredicted RBP12.78□□□□□ -0.36
PSEN1-213ENST00000555386 COL5A3P25940 1745 aaPredicted RBP12.78□□□□□ -0.36
PSEN1-213ENST00000555386 CRKLP46109 303 aaKnown RBP12.78□□□□□ -0.36
PSEN1-213ENST00000555386 PIP4K2AP48426 406 aaPredicted RBP12.78□□□□□ -0.36
PSEN1-213ENST00000555386 CALD1Q05682 793 aaKnown RBP12.78□□□□□ -0.36
PSEN1-213ENST00000555386 NECTIN2Q92692 538 aa12.78□□□□□ -0.36
PSEN1-213ENST00000555386 TSR2Q969E8 191 aaKnown RBP12.78□□□□□ -0.36
PSEN1-213ENST00000555386 AKT1S1Q96B36 256 aa12.78□□□□□ -0.36
PSEN1-213ENST00000555386 CHL1O00533 1208 aa12.77□□□□□ -0.37
PSEN1-213ENST00000555386 CANXP27824 592 aaKnown RBP12.77□□□□□ -0.37
PSEN1-213ENST00000555386 EIF4A1P60842 406 aaKnown RBP12.77□□□□□ -0.37
PSEN1-213ENST00000555386 GNAI1P63096 354 aa12.77□□□□□ -0.37
PSEN1-213ENST00000555386 SAMD1Q6SPF0 538 aaPredicted RBP12.77□□□□□ -0.37
PSEN1-213ENST00000555386 AMIGO3Q86WK7 504 aa12.77□□□□□ -0.37
PSEN1-213ENST00000555386 CFAP44Q96MT7 982 aa12.77□□□□□ -0.37
PSEN1-213ENST00000555386 MBIPQ9NS73 344 aa12.77□□□□□ -0.37
PSEN1-213ENST00000555386 ELL2O00472 640 aaPredicted RBP12.76□□□□□ -0.37
PSEN1-213ENST00000555386 STARD3NLO95772 234 aa12.76□□□□□ -0.37
PSEN1-213ENST00000555386 SNRPA1P09661 255 aaKnown RBP12.76□□□□□ -0.37
PSEN1-213ENST00000555386 EIF2S2P20042 333 aaKnown RBP12.76□□□□□ -0.37
PSEN1-213ENST00000555386 CCDC27Q2M243 656 aa12.76□□□□□ -0.37
PSEN1-213ENST00000555386 ARXQ96QS3 562 aa12.76□□□□□ -0.37
PSEN1-213ENST00000555386 IFT57Q9NWB7 429 aa12.76□□□□□ -0.37
PSEN1-213ENST00000555386 USP16Q9Y5T5 823 aa12.76□□□□□ -0.37
PSEN1-213ENST00000555386 UBR3Q6ZT12 1888 aa12.76□□□□□ -0.37
PSEN1-213ENST00000555386 A1BGP04217 495 aa12.75□□□□□ -0.37
PSEN1-213ENST00000555386 CYP19A1P11511 503 aaPredicted RBP12.75□□□□□ -0.37
PSEN1-213ENST00000555386 VSIG10Q8N0Z9 540 aa12.75□□□□□ -0.37
PSEN1-213ENST00000555386 CCDC87Q9NVE4 849 aa12.75□□□□□ -0.37
PSEN1-213ENST00000555386 PPP4R2Q9NY27 417 aa12.75□□□□□ -0.37
PSEN1-213ENST00000555386 ZNF831Q5JPB2 1677 aa12.75□□□□□ -0.37
PSEN1-213ENST00000555386 PNPLA7Q6ZV29 1317 aa12.74□□□□□ -0.37
PSEN1-213ENST00000555386 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.74□□□□□ -0.37
PSEN1-213ENST00000555386 ZBTB7AO95365 584 aa12.74□□□□□ -0.37
PSEN1-213ENST00000555386 INTS5Q6P9B9 1019 aaKnown RBP12.74□□□□□ -0.37
PSEN1-213ENST00000555386 NGEFQ8N5V2 710 aa12.74□□□□□ -0.37
PSEN1-213ENST00000555386 ZBTB1Q9Y2K1 713 aa12.74□□□□□ -0.37
PSEN1-213ENST00000555386 RTCBQ9Y3I0 505 aaKnown RBP12.74□□□□□ -0.37
PSEN1-213ENST00000555386 RNF123Q5XPI4 1314 aa12.73□□□□□ -0.37
PSEN1-213ENST00000555386 GIGYF1O75420 1035 aaPredicted RBP12.73□□□□□ -0.37
PSEN1-213ENST00000555386 ZNF853P0CG23 659 aa12.73□□□□□ -0.37
PSEN1-213ENST00000555386 MSL1Q68DK7 614 aa12.73□□□□□ -0.37
PSEN1-213ENST00000555386 COL23A1Q86Y22 540 aaPredicted RBP12.73□□□□□ -0.37
PSEN1-213ENST00000555386 TEX13AQ9BXU3 409 aaPredicted RBP12.73□□□□□ -0.37
PSEN1-213ENST00000555386 SPINK5Q9NQ38 1064 aaPredicted RBP12.73□□□□□ -0.37
PSEN1-213ENST00000555386 BABAM1Q9NWV8 329 aa12.73□□□□□ -0.37
PSEN1-213ENST00000555386 CNTNAP4Q9C0A0 1308 aa12.73□□□□□ -0.37
PSEN1-213ENST00000555386 MYL6BP14649 208 aa12.72□□□□□ -0.37
PSEN1-213ENST00000555386 WDR63Q8IWG1 891 aa12.72□□□□□ -0.37
PSEN1-213ENST00000555386 ATF5Q9Y2D1 282 aaPredicted RBP12.72□□□□□ -0.37
PSEN1-213ENST00000555386 LAMB4A4D0S4 1761 aa12.72□□□□□ -0.37
PSEN1-213ENST00000555386 RPS6KA4O75676 772 aa12.72□□□□□ -0.37
PSEN1-213ENST00000555386 HMGB2P26583 209 aaKnown RBP12.72□□□□□ -0.37
PSEN1-213ENST00000555386 TRAPPC3LQ5T215 181 aa12.72□□□□□ -0.37
PSEN1-213ENST00000555386 RC3H1Q5TC82 1133 aaKnown RBP12.72□□□□□ -0.37
PSEN1-213ENST00000555386 DUSP27Q5VZP5 1158 aa12.72□□□□□ -0.37
PSEN1-213ENST00000555386 NPM2Q86SE8 214 aaKnown RBP12.72□□□□□ -0.37
PSEN1-213ENST00000555386 C8orf58Q8NAV2 365 aa12.72□□□□□ -0.37
PSEN1-213ENST00000555386 CDCA7LQ96GN5 454 aa12.72□□□□□ -0.37
PSEN1-213ENST00000555386 FANCIQ9NVI1 1328 aa12.71□□□□□ -0.37
PSEN1-213ENST00000555386 TCERG1O14776 1098 aaKnown RBP12.71□□□□□ -0.38
PSEN1-213ENST00000555386 ANXA1P04083 346 aa12.71□□□□□ -0.38
PSEN1-213ENST00000555386 RFC4P35249 363 aa12.71□□□□□ -0.38
PSEN1-213ENST00000555386 GOLGA2Q08379 1002 aa12.71□□□□□ -0.38
PSEN1-213ENST00000555386 ARHGEF1Q92888 912 aaKnown RBP12.71□□□□□ -0.38
PSEN1-213ENST00000555386 QSER1Q2KHR3 1735 aa12.7□□□□□ -0.38
PSEN1-213ENST00000555386 IL16Q14005 1332 aa12.7□□□□□ -0.38
PSEN1-213ENST00000555386 SSFA2P28290 1259 aa12.7□□□□□ -0.38
PSEN1-213ENST00000555386 TSPYL6Q8N831 410 aa12.7□□□□□ -0.38
PSEN1-213ENST00000555386 MYH16Q9H6N6 1097 aa12.7□□□□□ -0.38
PSEN1-213ENST00000555386 SRP68Q9UHB9 627 aaKnown RBP12.7□□□□□ -0.38
PSEN1-213ENST00000555386 CICQ96RK0 1608 aaPredicted RBP12.7□□□□□ -0.38
PSEN1-213ENST00000555386 CASZ1Q86V15 1759 aa12.69□□□□□ -0.38
PSEN1-213ENST00000555386 EXOSC9Q06265 439 aaKnown RBP12.69□□□□□ -0.38
PSEN1-213ENST00000555386 HDGFL1Q5TGJ6 251 aa12.69□□□□□ -0.38
PSEN1-213ENST00000555386 FLAD1Q8NFF5 587 aa12.69□□□□□ -0.38
PSEN1-213ENST00000555386 TBC1D2BQ9UPU7 963 aa12.69□□□□□ -0.38
PSEN1-213ENST00000555386 C4AP0C0L4 1744 aa12.69□□□□□ -0.38
PSEN1-213ENST00000555386 SOS1Q07889 1333 aaPredicted RBP12.68□□□□□ -0.38
PSEN1-213ENST00000555386 ZNF521Q96K83 1311 aa12.68□□□□□ -0.38
PSEN1-213ENST00000555386 DCAF8L1A6NGE4 600 aa12.68□□□□□ -0.38
PSEN1-213ENST00000555386 NBPF26B4DH59 902 aa12.68□□□□□ -0.38
PSEN1-213ENST00000555386 NBPF10Q6P3W6 841 aaKnown RBP12.68□□□□□ -0.38
PSEN1-213ENST00000555386 NBPF15Q8N660 670 aa12.68□□□□□ -0.38
PSEN1-213ENST00000555386 COL15A1P39059 1388 aa12.68□□□□□ -0.38
PSEN1-213ENST00000555386 ZPR1O75312 459 aa12.67□□□□□ -0.38
PSEN1-213ENST00000555386 AIMP1Q12904 312 aaKnown RBP12.67□□□□□ -0.38
PSEN1-213ENST00000555386 PROSER3Q2NL68 480 aa12.67□□□□□ -0.38
PSEN1-213ENST00000555386 TWISTNBQ3B726 338 aaPredicted RBP12.67□□□□□ -0.38
PSEN1-213ENST00000555386 CHPF2Q9P2E5 772 aa12.67□□□□□ -0.38
PSEN1-213ENST00000555386 E9PSI1 815 aa12.66□□□□□ -0.38
PSEN1-213ENST00000555386 IL6STP40189 918 aaPredicted RBP12.66□□□□□ -0.38
PSEN1-213ENST00000555386 EIF5P55010 431 aaKnown RBP12.66□□□□□ -0.38
PSEN1-213ENST00000555386 USPL1Q5W0Q7 1092 aa12.66□□□□□ -0.38
PSEN1-213ENST00000555386 IRX6P78412 446 aaPredicted RBP12.65□□□□□ -0.38
PSEN1-213ENST00000555386 SLFN5Q08AF3 891 aa12.65□□□□□ -0.38
PSEN1-213ENST00000555386 DZIP3Q86Y13 1208 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms