RNA–Protein interactions for RNA: ENST00000555323.1

SYNE2-219, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 389 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-219ENST00000555323 RREB1Q92766 1687 aa16.4■□□□□ 0.22
SYNE2-219ENST00000555323 CRKLP46109 303 aaKnown RBP16.4■□□□□ 0.22
SYNE2-219ENST00000555323 TWISTNBQ3B726 338 aaPredicted RBP16.4■□□□□ 0.22
SYNE2-219ENST00000555323 NBPF14Q5TI25 921 aa16.4■□□□□ 0.22
SYNE2-219ENST00000555323 ELL2O00472 640 aaPredicted RBP16.39■□□□□ 0.21
SYNE2-219ENST00000555323 RPS6KA4O75676 772 aa16.39■□□□□ 0.21
SYNE2-219ENST00000555323 SLC15A2Q16348 729 aa16.39■□□□□ 0.21
SYNE2-219ENST00000555323 CCDC87Q9NVE4 849 aa16.39■□□□□ 0.21
SYNE2-219ENST00000555323 ERBB4Q15303 1308 aa16.39■□□□□ 0.21
SYNE2-219ENST00000555323 C5P01031 1676 aa16.38■□□□□ 0.21
SYNE2-219ENST00000555323 A1BGP04217 495 aa16.38■□□□□ 0.21
SYNE2-219ENST00000555323 CT47B1P0C2W7 299 aaPredicted RBP16.38■□□□□ 0.21
SYNE2-219ENST00000555323 PDIA6Q15084 440 aa16.38■□□□□ 0.21
SYNE2-219ENST00000555323 ZNF827Q17R98 1081 aa16.38■□□□□ 0.21
SYNE2-219ENST00000555323 ANO8Q9HCE9 1232 aaPredicted RBP16.38■□□□□ 0.21
SYNE2-219ENST00000555323 TJP1Q07157 1748 aa16.38■□□□□ 0.21
SYNE2-219ENST00000555323 TAF1LQ8IZX4 1826 aa16.38■□□□□ 0.21
SYNE2-219ENST00000555323 NBPF26B4DH59 902 aa16.37■□□□□ 0.21
SYNE2-219ENST00000555323 EIF2S2P20042 333 aaKnown RBP16.37■□□□□ 0.21
SYNE2-219ENST00000555323 IL6STP40189 918 aaPredicted RBP16.37■□□□□ 0.21
SYNE2-219ENST00000555323 NBPF10Q6P3W6 841 aaKnown RBP16.37■□□□□ 0.21
SYNE2-219ENST00000555323 NBPF15Q8N660 670 aa16.37■□□□□ 0.21
SYNE2-219ENST00000555323 ZNF428Q96B54 188 aa16.37■□□□□ 0.21
SYNE2-219ENST00000555323 STK32BQ9NY57 414 aa16.37■□□□□ 0.21
SYNE2-219ENST00000555323 ZBTB1Q9Y2K1 713 aa16.37■□□□□ 0.21
SYNE2-219ENST00000555323 COL5A3P25940 1745 aaPredicted RBP16.36■□□□□ 0.21
SYNE2-219ENST00000555323 EIF5P55010 431 aaKnown RBP16.36■□□□□ 0.21
SYNE2-219ENST00000555323 HDGFL1Q5TGJ6 251 aa16.36■□□□□ 0.21
SYNE2-219ENST00000555323 CCDC30Q5VVM6 783 aa16.36■□□□□ 0.21
SYNE2-219ENST00000555323 LRP10Q7Z4F1 713 aa16.36■□□□□ 0.21
SYNE2-219ENST00000555323 AK7Q96M32 723 aa16.36■□□□□ 0.21
SYNE2-219ENST00000555323 YTHDC1Q96MU7 727 aaKnown RBP16.36■□□□□ 0.21
SYNE2-219ENST00000555323 RTCBQ9Y3I0 505 aaKnown RBP16.36■□□□□ 0.21
SYNE2-219ENST00000555323 C4BP0C0L5 1744 aa16.36■□□□□ 0.21
SYNE2-219ENST00000555323 NUP188Q5SRE5 1749 aa16.36■□□□□ 0.21
SYNE2-219ENST00000555323 ADRA2BP18089 450 aa16.35■□□□□ 0.21
SYNE2-219ENST00000555323 SSFA2P28290 1259 aa16.35■□□□□ 0.21
SYNE2-219ENST00000555323 FLAD1Q8NFF5 587 aa16.35■□□□□ 0.21
SYNE2-219ENST00000555323 DDX21Q9NR30 783 aaKnown RBP eCLIP16.35■□□□□ 0.21
SYNE2-219ENST00000555323 DBF4Q9UBU7 674 aaPredicted RBP16.35■□□□□ 0.21
SYNE2-219ENST00000555323 MYH14Q7Z406 1995 aaKnown RBP16.35■□□□□ 0.21
SYNE2-219ENST00000555323 GNPATO15228 680 aa16.34■□□□□ 0.21
SYNE2-219ENST00000555323 CANXP27824 592 aaKnown RBP16.34■□□□□ 0.21
SYNE2-219ENST00000555323 AMIGO3Q86WK7 504 aa16.34■□□□□ 0.21
SYNE2-219ENST00000555323 TFCP2L1Q9NZI6 479 aa16.34■□□□□ 0.21
SYNE2-219ENST00000555323 TRAPPC3LQ5T215 181 aa16.33■□□□□ 0.2
SYNE2-219ENST00000555323 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.32■□□□□ 0.2
SYNE2-219ENST00000555323 PNPLA7Q6ZV29 1317 aa16.32■□□□□ 0.2
SYNE2-219ENST00000555323 NECTIN2Q92692 538 aa16.32■□□□□ 0.2
SYNE2-219ENST00000555323 ARHGEF1Q92888 912 aaKnown RBP16.32■□□□□ 0.2
SYNE2-219ENST00000555323 CHPF2Q9P2E5 772 aa16.32■□□□□ 0.2
SYNE2-219ENST00000555323 LAMB4A4D0S4 1761 aa16.31■□□□□ 0.2
SYNE2-219ENST00000555323 A0A087WZG4 1122 aa16.31■□□□□ 0.2
SYNE2-219ENST00000555323 PROSER3Q2NL68 480 aa16.31■□□□□ 0.2
SYNE2-219ENST00000555323 COL23A1Q86Y22 540 aaPredicted RBP16.31■□□□□ 0.2
SYNE2-219ENST00000555323 HYPKQ9NX55 129 aa16.31■□□□□ 0.2
SYNE2-219ENST00000555323 PIP4K2AP48426 406 aaPredicted RBP16.3■□□□□ 0.2
SYNE2-219ENST00000555323 BRPF1P55201 1214 aaPredicted RBP16.3■□□□□ 0.2
SYNE2-219ENST00000555323 ALDH1L2Q3SY69 923 aa16.3■□□□□ 0.2
SYNE2-219ENST00000555323 RGL2O15211 777 aa16.29■□□□□ 0.2
SYNE2-219ENST00000555323 SLC4A2P04920 1241 aa16.29■□□□□ 0.2
SYNE2-219ENST00000555323 MYL6BP14649 208 aa16.29■□□□□ 0.2
SYNE2-219ENST00000555323 SMIM5Q71RC9 77 aa16.29■□□□□ 0.2
SYNE2-219ENST00000555323 STK31Q9BXU1 1019 aa16.29■□□□□ 0.2
SYNE2-219ENST00000555323 COL15A1P39059 1388 aa16.28■□□□□ 0.2
SYNE2-219ENST00000555323 ANXA1P04083 346 aa16.28■□□□□ 0.2
SYNE2-219ENST00000555323 RFC4P35249 363 aa16.28■□□□□ 0.2
SYNE2-219ENST00000555323 R3HDM1Q15032 1099 aaKnown RBP16.28■□□□□ 0.2
SYNE2-219ENST00000555323 NPM2Q86SE8 214 aaKnown RBP16.28■□□□□ 0.2
SYNE2-219ENST00000555323 SLC16A10Q8TF71 515 aa16.28■□□□□ 0.2
SYNE2-219ENST00000555323 NARFQ9UHQ1 456 aa16.28■□□□□ 0.2
SYNE2-219ENST00000555323 UBR3Q6ZT12 1888 aa16.28■□□□□ 0.2
SYNE2-219ENST00000555323 ERVV-1B6SEH8 477 aa16.27■□□□□ 0.2
SYNE2-219ENST00000555323 PHF14O94880 888 aa16.27■□□□□ 0.2
SYNE2-219ENST00000555323 RARSP54136 660 aaKnown RBP16.27■□□□□ 0.2
SYNE2-219ENST00000555323 COPS6Q7L5N1 327 aa16.27■□□□□ 0.2
SYNE2-219ENST00000555323 SSH1Q8WYL5 1049 aa16.27■□□□□ 0.2
SYNE2-219ENST00000555323 USP42Q9H9J4 1324 aaKnown RBP16.26■□□□□ 0.19
SYNE2-219ENST00000555323 QSER1Q2KHR3 1735 aa16.26■□□□□ 0.19
SYNE2-219ENST00000555323 TCERG1O14776 1098 aaKnown RBP16.26■□□□□ 0.19
SYNE2-219ENST00000555323 DZIP3Q86Y13 1208 aaKnown RBP16.26■□□□□ 0.19
SYNE2-219ENST00000555323 MRPL50Q8N5N7 158 aaKnown RBP16.26■□□□□ 0.19
SYNE2-219ENST00000555323 XAGE3Q8WTP9 111 aa16.26■□□□□ 0.19
SYNE2-219ENST00000555323 PDGFDQ9GZP0 370 aaPredicted RBP16.26■□□□□ 0.19
SYNE2-219ENST00000555323 PHAXQ9H814 394 aaKnown RBP16.26■□□□□ 0.19
SYNE2-219ENST00000555323 TBC1D2BQ9UPU7 963 aa16.26■□□□□ 0.19
SYNE2-219ENST00000555323 CAMTA2O94983 1202 aa16.25■□□□□ 0.19
SYNE2-219ENST00000555323 CLEC4GQ6UXB4 293 aa16.25■□□□□ 0.19
SYNE2-219ENST00000555323 TTLL7Q6ZT98 887 aa16.25■□□□□ 0.19
SYNE2-219ENST00000555323 ZNF330Q9Y3S2 320 aaPredicted RBP16.25■□□□□ 0.19
SYNE2-219ENST00000555323 MAP3K15Q6ZN16 1313 aa16.24■□□□□ 0.19
SYNE2-219ENST00000555323 ZPR1O75312 459 aa16.24■□□□□ 0.19
SYNE2-219ENST00000555323 GYS1P13807 737 aa16.24■□□□□ 0.19
SYNE2-219ENST00000555323 ANKRD13DQ6ZTN6 518 aa16.24■□□□□ 0.19
SYNE2-219ENST00000555323 G2E3Q7L622 706 aa16.24■□□□□ 0.19
SYNE2-219ENST00000555323 BCL2L12Q9HB09 334 aa16.24■□□□□ 0.19
SYNE2-219ENST00000555323 PSDA5PKW4 1024 aaPredicted RBP16.23■□□□□ 0.19
SYNE2-219ENST00000555323 AIMP1Q12904 312 aaKnown RBP16.23■□□□□ 0.19
SYNE2-219ENST00000555323 FLIIQ13045 1269 aa16.23■□□□□ 0.19
SYNE2-219ENST00000555323 USPL1Q5W0Q7 1092 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms