RNA–Protein interactions for RNA: ENST00000555241.5

SYNE2-218, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 665 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-218ENST00000555241 TEX13AQ9BXU3 409 aaPredicted RBP28.58■■■□□ 2.17
SYNE2-218ENST00000555241 SRP68Q9UHB9 627 aaKnown RBP28.57■■■□□ 2.16
SYNE2-218ENST00000555241 COL15A1P39059 1388 aa28.57■■■□□ 2.16
SYNE2-218ENST00000555241 KIAA1551Q9HCM1 1747 aa28.57■■■□□ 2.16
SYNE2-218ENST00000555241 DCTN1Q14203 1278 aa28.56■■■□□ 2.16
SYNE2-218ENST00000555241 MAPK8IP3Q9UPT6 1336 aa28.55■■■□□ 2.16
SYNE2-218ENST00000555241 N4BP2Q86UW6 1770 aaPredicted RBP28.55■■■□□ 2.16
SYNE2-218ENST00000555241 C10orf71Q711Q0 1435 aa28.54■■■□□ 2.16
SYNE2-218ENST00000555241 ZPR1O75312 459 aa28.54■■■□□ 2.16
SYNE2-218ENST00000555241 PARP3Q9Y6F1 533 aa28.54■■■□□ 2.16
SYNE2-218ENST00000555241 KDM3BQ7LBC6 1761 aa28.53■■■□□ 2.16
SYNE2-218ENST00000555241 KCNQ3O43525 872 aa28.53■■■□□ 2.16
SYNE2-218ENST00000555241 FKBP8Q14318 412 aa28.53■■■□□ 2.16
SYNE2-218ENST00000555241 NFE2L2Q16236 605 aa28.53■■■□□ 2.16
SYNE2-218ENST00000555241 GRIN3BO60391 1043 aa28.52■■■□□ 2.16
SYNE2-218ENST00000555241 YBX3P16989 372 aaKnown RBP eCLIP28.52■■■□□ 2.16
SYNE2-218ENST00000555241 CANXP27824 592 aaKnown RBP28.52■■■□□ 2.16
SYNE2-218ENST00000555241 NARFQ9UHQ1 456 aa28.52■■■□□ 2.16
SYNE2-218ENST00000555241 AFDNP55196 1824 aaKnown RBP28.51■■■□□ 2.15
SYNE2-218ENST00000555241 USPL1Q5W0Q7 1092 aa28.51■■■□□ 2.15
SYNE2-218ENST00000555241 BRCA1P38398 1863 aaKnown RBP28.51■■■□□ 2.15
SYNE2-218ENST00000555241 EIF5P55010 431 aaKnown RBP28.5■■■□□ 2.15
SYNE2-218ENST00000555241 TAF7Q15545 349 aaPredicted RBP28.5■■■□□ 2.15
SYNE2-218ENST00000555241 SCN7AQ01118 1682 aa28.5■■■□□ 2.15
SYNE2-218ENST00000555241 LAMB4A4D0S4 1761 aa28.5■■■□□ 2.15
SYNE2-218ENST00000555241 PRKRIP1Q9H875 184 aaPredicted RBP28.49■■■□□ 2.15
SYNE2-218ENST00000555241 PXDNLA1KZ92 1463 aa28.48■■■□□ 2.15
SYNE2-218ENST00000555241 A0A087WZG4 1122 aa28.47■■■□□ 2.15
SYNE2-218ENST00000555241 TGFB2P61812 414 aa28.47■■■□□ 2.15
SYNE2-218ENST00000555241 NRXN2Q9P2S2 1712 aa28.46■■■□□ 2.15
SYNE2-218ENST00000555241 TM4SF1P30408 202 aa28.46■■■□□ 2.15
SYNE2-218ENST00000555241 IL6STP40189 918 aaPredicted RBP28.46■■■□□ 2.15
SYNE2-218ENST00000555241 DDR1Q08345 913 aa28.46■■■□□ 2.15
SYNE2-218ENST00000555241 SNRPA1P09661 255 aaKnown RBP28.45■■■□□ 2.14
SYNE2-218ENST00000555241 PNISRQ8TF01 805 aaKnown RBP28.45■■■□□ 2.14
SYNE2-218ENST00000555241 BCORQ6W2J9 1755 aa28.45■■■□□ 2.14
SYNE2-218ENST00000555241 POLRMTO00411 1230 aaKnown RBP28.43■■■□□ 2.14
SYNE2-218ENST00000555241 A1BGP04217 495 aa28.43■■■□□ 2.14
SYNE2-218ENST00000555241 BCL2L12Q9HB09 334 aa28.43■■■□□ 2.14
SYNE2-218ENST00000555241 USP16Q9Y5T5 823 aa28.43■■■□□ 2.14
SYNE2-218ENST00000555241 PRAMEF22A3QJZ6 481 aa28.41■■■□□ 2.14
SYNE2-218ENST00000555241 NFIXQ14938 502 aa28.41■■■□□ 2.14
SYNE2-218ENST00000555241 WDR43Q15061 677 aaKnown RBP eCLIP28.41■■■□□ 2.14
SYNE2-218ENST00000555241 NPM2Q86SE8 214 aaKnown RBP28.41■■■□□ 2.14
SYNE2-218ENST00000555241 ARFGEF1Q9Y6D6 1849 aa28.41■■■□□ 2.14
SYNE2-218ENST00000555241 THUMPD2Q9BTF0 503 aaKnown RBP28.4■■■□□ 2.14
SYNE2-218ENST00000555241 MIS18AQ9NYP9 233 aa28.4■■■□□ 2.14
SYNE2-218ENST00000555241 ZNF330Q9Y3S2 320 aaPredicted RBP28.4■■■□□ 2.14
SYNE2-218ENST00000555241 RIPK4P57078 832 aa28.39■■■□□ 2.14
SYNE2-218ENST00000555241 WWC3Q9ULE0 1092 aa28.39■■■□□ 2.14
SYNE2-218ENST00000555241 A0A0G2JLW4 131 aa28.38■■■□□ 2.13
SYNE2-218ENST00000555241 TMPOP42166 694 aaKnown RBP28.38■■■□□ 2.13
SYNE2-218ENST00000555241 DPEP1P16444 411 aa28.37■■■□□ 2.13
SYNE2-218ENST00000555241 LMOD3Q0VAK6 560 aa28.37■■■□□ 2.13
SYNE2-218ENST00000555241 ZNF784Q8NCA9 323 aaPredicted RBP28.37■■■□□ 2.13
SYNE2-218ENST00000555241 TBC1D2BQ9UPU7 963 aa28.37■■■□□ 2.13
SYNE2-218ENST00000555241 DLEC1Q9Y238 1755 aa28.35■■■□□ 2.13
SYNE2-218ENST00000555241 CCDC146Q8IYE0 955 aa28.35■■■□□ 2.13
SYNE2-218ENST00000555241 RUNDC1Q96C34 613 aa28.35■■■□□ 2.13
SYNE2-218ENST00000555241 SERPINB2P05120 415 aa28.33■■■□□ 2.13
SYNE2-218ENST00000555241 EIF4A1P60842 406 aaKnown RBP28.33■■■□□ 2.13
SYNE2-218ENST00000555241 ADAMTS8Q9UP79 889 aa28.33■■■□□ 2.13
SYNE2-218ENST00000555241 GIGYF1O75420 1035 aaPredicted RBP28.32■■■□□ 2.12
SYNE2-218ENST00000555241 CAMTA2O94983 1202 aa28.32■■■□□ 2.12
SYNE2-218ENST00000555241 KCNA3P22001 575 aa28.32■■■□□ 2.12
SYNE2-218ENST00000555241 PIP4K2AP48426 406 aaPredicted RBP28.32■■■□□ 2.12
SYNE2-218ENST00000555241 DZIP3Q86Y13 1208 aaKnown RBP28.32■■■□□ 2.12
SYNE2-218ENST00000555241 BCS1LQ9Y276 419 aa28.32■■■□□ 2.12
SYNE2-218ENST00000555241 ZNF316A6NFI3 1004 aaPredicted RBP28.31■■■□□ 2.12
SYNE2-218ENST00000555241 TBC1D9BQ66K14 1250 aa28.31■■■□□ 2.12
SYNE2-218ENST00000555241 BICDL1Q6ZP65 573 aa28.31■■■□□ 2.12
SYNE2-218ENST00000555241 ANKRD31Q8N7Z5 1873 aa28.31■■■□□ 2.12
SYNE2-218ENST00000555241 NBPF26B4DH59 902 aa28.3■■■□□ 2.12
SYNE2-218ENST00000555241 NBPF10Q6P3W6 841 aaKnown RBP28.3■■■□□ 2.12
SYNE2-218ENST00000555241 NBPF15Q8N660 670 aa28.3■■■□□ 2.12
SYNE2-218ENST00000555241 BABAM1Q9NWV8 329 aa28.3■■■□□ 2.12
SYNE2-218ENST00000555241 TSPYL4Q9UJ04 414 aa28.3■■■□□ 2.12
SYNE2-218ENST00000555241 RRP7AQ9Y3A4 280 aaKnown RBP28.3■■■□□ 2.12
SYNE2-218ENST00000555241 CARMIL3Q8ND23 1372 aa28.29■■■□□ 2.12
SYNE2-218ENST00000555241 PIM2Q9P1W9 311 aa28.29■■■□□ 2.12
SYNE2-218ENST00000555241 NEUROD2Q15784 382 aa28.27■■■□□ 2.12
SYNE2-218ENST00000555241 NUP98P52948 1817 aa28.27■■■□□ 2.12
SYNE2-218ENST00000555241 CHRNA5P30532 468 aa28.26■■■□□ 2.11
SYNE2-218ENST00000555241 CLEC4GQ6UXB4 293 aa28.26■■■□□ 2.11
SYNE2-218ENST00000555241 RGL2O15211 777 aa28.25■■■□□ 2.11
SYNE2-218ENST00000555241 SETDB2Q96T68 719 aa28.25■■■□□ 2.11
SYNE2-218ENST00000555241 ZNF652Q9Y2D9 606 aa28.25■■■□□ 2.11
SYNE2-218ENST00000555241 DALRD3Q5D0E6 543 aaKnown RBP28.24■■■□□ 2.11
SYNE2-218ENST00000555241 TRIM35Q9UPQ4 493 aa28.24■■■□□ 2.11
SYNE2-218ENST00000555241 ADCY9O60503 1353 aa28.24■■■□□ 2.11
SYNE2-218ENST00000555241 ERBB4Q15303 1308 aa28.21■■■□□ 2.11
SYNE2-218ENST00000555241 COL11A2P13942 1736 aaPredicted RBP28.21■■■□□ 2.11
SYNE2-218ENST00000555241 PRR5LQ6MZQ0 368 aa28.21■■■□□ 2.11
SYNE2-218ENST00000555241 ATP10DQ9P241 1426 aa28.19■■■□□ 2.1
SYNE2-218ENST00000555241 SBF1O95248 1867 aa28.19■■■□□ 2.1
SYNE2-218ENST00000555241 CNBD1Q8NA66 436 aa28.19■■■□□ 2.1
SYNE2-218ENST00000555241 BRIP1Q9BX63 1249 aa28.19■■■□□ 2.1
SYNE2-218ENST00000555241 PDZRN3Q9UPQ7 1066 aa28.19■■■□□ 2.1
SYNE2-218ENST00000555241 CHL1O00533 1208 aa28.18■■■□□ 2.1
SYNE2-218ENST00000555241 ARHGAP27Q6ZUM4 889 aa28.18■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms