RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 KDM3BQ7LBC6 1761 aa13.12□□□□□ -0.31
SYNE2-215ENST00000554997 A1BGP04217 495 aa13.12□□□□□ -0.31
SYNE2-215ENST00000554997 INTS5Q6P9B9 1019 aaKnown RBP13.12□□□□□ -0.31
SYNE2-215ENST00000554997 LINC00116Q8NCU8 138 aa13.12□□□□□ -0.31
SYNE2-215ENST00000554997 PAPPAQ13219 1627 aa13.12□□□□□ -0.31
SYNE2-215ENST00000554997 ERBB4Q15303 1308 aa13.12□□□□□ -0.31
SYNE2-215ENST00000554997 CRKLP46109 303 aaKnown RBP13.11□□□□□ -0.31
SYNE2-215ENST00000554997 PDIA6Q15084 440 aa13.11□□□□□ -0.31
SYNE2-215ENST00000554997 ALDH1L2Q3SY69 923 aa13.11□□□□□ -0.31
SYNE2-215ENST00000554997 CCDC87Q9NVE4 849 aa13.11□□□□□ -0.31
SYNE2-215ENST00000554997 DBF4Q9UBU7 674 aaPredicted RBP13.11□□□□□ -0.31
SYNE2-215ENST00000554997 NBPF26B4DH59 902 aa13.1□□□□□ -0.31
SYNE2-215ENST00000554997 SLC4A2P04920 1241 aa13.1□□□□□ -0.31
SYNE2-215ENST00000554997 RARSP54136 660 aaKnown RBP13.1□□□□□ -0.31
SYNE2-215ENST00000554997 NBPF14Q5TI25 921 aa13.1□□□□□ -0.31
SYNE2-215ENST00000554997 NBPF10Q6P3W6 841 aaKnown RBP13.1□□□□□ -0.31
SYNE2-215ENST00000554997 NBPF15Q8N660 670 aa13.1□□□□□ -0.31
SYNE2-215ENST00000554997 NECTIN2Q92692 538 aa13.1□□□□□ -0.31
SYNE2-215ENST00000554997 STK31Q9BXU1 1019 aa13.1□□□□□ -0.31
SYNE2-215ENST00000554997 DDX21Q9NR30 783 aaKnown RBP eCLIP13.1□□□□□ -0.31
SYNE2-215ENST00000554997 CNTNAP4Q9C0A0 1308 aa13.1□□□□□ -0.31
SYNE2-215ENST00000554997 UBR2Q8IWV8 1755 aa13.09□□□□□ -0.31
SYNE2-215ENST00000554997 RPS6KA4O75676 772 aa13.09□□□□□ -0.31
SYNE2-215ENST00000554997 SSH1Q8WYL5 1049 aa13.09□□□□□ -0.31
SYNE2-215ENST00000554997 AKT1S1Q96B36 256 aa13.09□□□□□ -0.31
SYNE2-215ENST00000554997 HYPKQ9NX55 129 aa13.09□□□□□ -0.31
SYNE2-215ENST00000554997 CHPF2Q9P2E5 772 aa13.09□□□□□ -0.31
SYNE2-215ENST00000554997 ZNF831Q5JPB2 1677 aa13.08□□□□□ -0.31
SYNE2-215ENST00000554997 TCERG1O14776 1098 aaKnown RBP13.08□□□□□ -0.32
SYNE2-215ENST00000554997 CANXP27824 592 aaKnown RBP13.08□□□□□ -0.32
SYNE2-215ENST00000554997 IL6STP40189 918 aaPredicted RBP13.08□□□□□ -0.32
SYNE2-215ENST00000554997 BRPF1P55201 1214 aaPredicted RBP13.08□□□□□ -0.32
SYNE2-215ENST00000554997 LY75O60449 1722 aa13.08□□□□□ -0.32
SYNE2-215ENST00000554997 MYL6BP14649 208 aa13.07□□□□□ -0.32
SYNE2-215ENST00000554997 EIF5P55010 431 aaKnown RBP13.07□□□□□ -0.32
SYNE2-215ENST00000554997 LRP10Q7Z4F1 713 aa13.07□□□□□ -0.32
SYNE2-215ENST00000554997 MRPL50Q8N5N7 158 aaKnown RBP13.07□□□□□ -0.32
SYNE2-215ENST00000554997 AK7Q96M32 723 aa13.07□□□□□ -0.32
SYNE2-215ENST00000554997 RCAN3Q9UKA8 241 aa13.07□□□□□ -0.32
SYNE2-215ENST00000554997 ZBTB1Q9Y2K1 713 aa13.07□□□□□ -0.32
SYNE2-215ENST00000554997 RTCBQ9Y3I0 505 aaKnown RBP13.07□□□□□ -0.32
SYNE2-215ENST00000554997 PIP4K2AP48426 406 aaPredicted RBP13.06□□□□□ -0.32
SYNE2-215ENST00000554997 SLC15A2Q16348 729 aa13.06□□□□□ -0.32
SYNE2-215ENST00000554997 PROSER3Q2NL68 480 aa13.06□□□□□ -0.32
SYNE2-215ENST00000554997 TRAPPC3LQ5T215 181 aa13.06□□□□□ -0.32
SYNE2-215ENST00000554997 NPM2Q86SE8 214 aaKnown RBP13.06□□□□□ -0.32
SYNE2-215ENST00000554997 A0A087WZG4 1122 aa13.05□□□□□ -0.32
SYNE2-215ENST00000554997 GNPATO15228 680 aa13.05□□□□□ -0.32
SYNE2-215ENST00000554997 BCAR3O75815 825 aa13.05□□□□□ -0.32
SYNE2-215ENST00000554997 ANXA1P04083 346 aa13.05□□□□□ -0.32
SYNE2-215ENST00000554997 COPS6Q7L5N1 327 aa13.05□□□□□ -0.32
SYNE2-215ENST00000554997 FLAD1Q8NFF5 587 aa13.05□□□□□ -0.32
SYNE2-215ENST00000554997 PHAXQ9H814 394 aaKnown RBP13.05□□□□□ -0.32
SYNE2-215ENST00000554997 SMC4Q9NTJ3 1288 aa13.05□□□□□ -0.32
SYNE2-215ENST00000554997 STK32BQ9NY57 414 aa13.05□□□□□ -0.32
SYNE2-215ENST00000554997 TFCP2L1Q9NZI6 479 aa13.05□□□□□ -0.32
SYNE2-215ENST00000554997 RGPD3A6NKT7 1758 aaPredicted RBP13.04□□□□□ -0.32
SYNE2-215ENST00000554997 RGPD4Q7Z3J3 1758 aa13.04□□□□□ -0.32
SYNE2-215ENST00000554997 CICQ96RK0 1608 aaPredicted RBP13.04□□□□□ -0.32
SYNE2-215ENST00000554997 SSFA2P28290 1259 aa13.04□□□□□ -0.32
SYNE2-215ENST00000554997 ZNF827Q17R98 1081 aa13.04□□□□□ -0.32
SYNE2-215ENST00000554997 G2E3Q7L622 706 aa13.04□□□□□ -0.32
SYNE2-215ENST00000554997 ARHGAP45Q92619 1136 aa13.04□□□□□ -0.32
SYNE2-215ENST00000554997 ARHGEF1Q92888 912 aaKnown RBP13.04□□□□□ -0.32
SYNE2-215ENST00000554997 TJP1Q07157 1748 aa13.03□□□□□ -0.32
SYNE2-215ENST00000554997 IPO8O15397 1037 aaKnown RBP13.03□□□□□ -0.32
SYNE2-215ENST00000554997 AIMP1Q12904 312 aaKnown RBP13.03□□□□□ -0.32
SYNE2-215ENST00000554997 FLIIQ13045 1269 aa13.03□□□□□ -0.32
SYNE2-215ENST00000554997 ANKRD13DQ6ZTN6 518 aa13.03□□□□□ -0.32
SYNE2-215ENST00000554997 XAGE3Q8WTP9 111 aa13.03□□□□□ -0.32
SYNE2-215ENST00000554997 BCL2L13Q9BXK5 485 aa13.03□□□□□ -0.32
SYNE2-215ENST00000554997 NOB1Q9ULX3 412 aaKnown RBP13.03□□□□□ -0.32
SYNE2-215ENST00000554997 RREB1Q92766 1687 aa13.02□□□□□ -0.32
SYNE2-215ENST00000554997 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.02□□□□□ -0.33
SYNE2-215ENST00000554997 ERVV-1B6SEH8 477 aa13.02□□□□□ -0.33
SYNE2-215ENST00000554997 CENPBP07199 599 aaPredicted RBP13.02□□□□□ -0.33
SYNE2-215ENST00000554997 AMIGO3Q86WK7 504 aa13.02□□□□□ -0.33
SYNE2-215ENST00000554997 ZNF330Q9Y3S2 320 aaPredicted RBP13.02□□□□□ -0.33
SYNE2-215ENST00000554997 C5P01031 1676 aa13.02□□□□□ -0.33
SYNE2-215ENST00000554997 RGL2O15211 777 aa13.01□□□□□ -0.33
SYNE2-215ENST00000554997 DDX58O95786 925 aaKnown RBP13.01□□□□□ -0.33
SYNE2-215ENST00000554997 RFC4P35249 363 aa13.01□□□□□ -0.33
SYNE2-215ENST00000554997 KSR2Q6VAB6 950 aa13.01□□□□□ -0.33
SYNE2-215ENST00000554997 TTLL7Q6ZT98 887 aa13.01□□□□□ -0.33
SYNE2-215ENST00000554997 SMIM5Q71RC9 77 aa13.01□□□□□ -0.33
SYNE2-215ENST00000554997 DZIP3Q86Y13 1208 aaKnown RBP13.01□□□□□ -0.33
SYNE2-215ENST00000554997 COL23A1Q86Y22 540 aaPredicted RBP13.01□□□□□ -0.33
SYNE2-215ENST00000554997 PLBD2Q8NHP8 589 aa13.01□□□□□ -0.33
SYNE2-215ENST00000554997 ARXQ96QS3 562 aa13.01□□□□□ -0.33
SYNE2-215ENST00000554997 ANO8Q9HCE9 1232 aaPredicted RBP13.01□□□□□ -0.33
SYNE2-215ENST00000554997 NARFQ9UHQ1 456 aa13.01□□□□□ -0.33
SYNE2-215ENST00000554997 TBC1D2BQ9UPU7 963 aa13.01□□□□□ -0.33
SYNE2-215ENST00000554997 PTPRCP08575 1304 aa13.01□□□□□ -0.33
SYNE2-215ENST00000554997 C4BP0C0L5 1744 aa13□□□□□ -0.33
SYNE2-215ENST00000554997 NUP188Q5SRE5 1749 aa13□□□□□ -0.33
SYNE2-215ENST00000554997 ZPR1O75312 459 aa13□□□□□ -0.33
SYNE2-215ENST00000554997 PHF14O94880 888 aa13□□□□□ -0.33
SYNE2-215ENST00000554997 CLEC4GQ6UXB4 293 aa13□□□□□ -0.33
SYNE2-215ENST00000554997 KIF6Q6ZMV9 814 aa13□□□□□ -0.33
SYNE2-215ENST00000554997 COL15A1P39059 1388 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms