RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 CFHR5Q9BXR6 569 aa3.11□□□□□ -1.91
PRPF39-208ENST00000554785 RUBCNLQ9H714 662 aa3.11□□□□□ -1.91
PRPF39-208ENST00000554785 SERTAD1Q9UHV2 236 aa3.11□□□□□ -1.91
PRPF39-208ENST00000554785 HCN2Q9UL51 889 aa3.11□□□□□ -1.91
PRPF39-208ENST00000554785 SKIP12755 728 aa3.11□□□□□ -1.91
PRPF39-208ENST00000554785 UBTFP17480 764 aaKnown RBP3.11□□□□□ -1.91
PRPF39-208ENST00000554785 LBRQ14739 615 aaKnown RBP3.11□□□□□ -1.91
PRPF39-208ENST00000554785 TLR1Q15399 786 aa3.11□□□□□ -1.91
PRPF39-208ENST00000554785 MAP7D1Q3KQU3 841 aa3.11□□□□□ -1.91
PRPF39-208ENST00000554785 HDGFL1Q5TGJ6 251 aa3.11□□□□□ -1.91
PRPF39-208ENST00000554785 TMEM214Q6NUQ4 689 aaKnown RBP3.11□□□□□ -1.91
PRPF39-208ENST00000554785 TBC1D9Q6ZT07 1266 aa3.11□□□□□ -1.91
PRPF39-208ENST00000554785 ERICH6Q7L0X2 663 aa3.11□□□□□ -1.91
PRPF39-208ENST00000554785 FNBP4Q8N3X1 1017 aaPredicted RBP3.11□□□□□ -1.91
PRPF39-208ENST00000554785 IQSEC3Q9UPP2 1182 aaPredicted RBP3.11□□□□□ -1.91
PRPF39-208ENST00000554785 CNTNAP5Q8WYK1 1306 aa3.11□□□□□ -1.91
PRPF39-208ENST00000554785 MX2P20592 715 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 MSX1P28360 303 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 SOX11P35716 441 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 SMTNP53814 917 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 NBPF11Q86T75 865 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 KLRG1Q96E93 195 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 NUCKS1Q9H1E3 243 aaKnown RBP3.1□□□□□ -1.91
PRPF39-208ENST00000554785 NOP53Q9NZM5 478 aaKnown RBP3.1□□□□□ -1.91
PRPF39-208ENST00000554785 KIAA1024Q9UPX6 916 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 A0A1B0GTH6 734 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 ATP4AP20648 1035 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 FLIIQ13045 1269 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 ESCO1Q5FWF5 840 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 C1orf229Q6ZS94 237 aaPredicted RBP3.1□□□□□ -1.91
PRPF39-208ENST00000554785 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.1□□□□□ -1.91
PRPF39-208ENST00000554785 RHBDD1Q8TEB9 315 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 ACDQ96AP0 544 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 SLC4A9Q96Q91 983 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 TIMELESSQ9UNS1 1208 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 PARP3Q9Y6F1 533 aa3.1□□□□□ -1.91
PRPF39-208ENST00000554785 USP17L5A8MUK1 530 aa3.09□□□□□ -1.91
PRPF39-208ENST00000554785 C2CD2LO14523 706 aa3.09□□□□□ -1.91
PRPF39-208ENST00000554785 ZBTB7BO15156 539 aaPredicted RBP3.09□□□□□ -1.91
PRPF39-208ENST00000554785 RAD21O60216 631 aa3.09□□□□□ -1.91
PRPF39-208ENST00000554785 PLA2G4AP47712 749 aa3.09□□□□□ -1.91
PRPF39-208ENST00000554785 GTF2IP78347 998 aa3.09□□□□□ -1.91
PRPF39-208ENST00000554785 CLDN10P78369 228 aa3.09□□□□□ -1.91
PRPF39-208ENST00000554785 MTFR1Q15390 333 aa3.09□□□□□ -1.91
PRPF39-208ENST00000554785 GNASQ5JWF2 1037 aa3.09□□□□□ -1.91
PRPF39-208ENST00000554785 TBCELQ5QJ74 424 aa3.09□□□□□ -1.91
PRPF39-208ENST00000554785 GOLGA6L1Q8N7Z2 621 aa3.09□□□□□ -1.91
PRPF39-208ENST00000554785 CCER1Q8TC90 406 aaPredicted RBP3.09□□□□□ -1.91
PRPF39-208ENST00000554785 SIRT1Q96EB6 747 aa3.09□□□□□ -1.91
PRPF39-208ENST00000554785 OXCT2Q9BYC2 517 aaPredicted RBP3.09□□□□□ -1.91
PRPF39-208ENST00000554785 A6NJY4 79 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 BNIP3LO60238 219 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 EPHA4P54764 986 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 EML3Q32P44 896 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 C14orf37Q86TY3 774 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 AIDAQ96BJ3 306 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 ABHD17AQ96GS6 310 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 NDFIP2Q9NV92 336 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 DNAAF2Q9NVR5 837 aaKnown RBP3.08□□□□□ -1.92
PRPF39-208ENST00000554785 ZNF358Q9NW07 568 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 SCO2A0A1W2PP80 73 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 USP17L3A6NCW0 530 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 USP17L4A6NCW7 530 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 CTBSQ01459 385 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 SH3PXD2AQ5TCZ1 1133 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 USP17L2Q6R6M4 530 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 USP17L1Q7RTZ2 530 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 TNS4Q8IZW8 715 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 NFATC2IPQ8NCF5 419 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 ZDHHC1Q8WTX9 485 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 NOD1Q9Y239 953 aa3.08□□□□□ -1.92
PRPF39-208ENST00000554785 CDK2AP1O14519 115 aa3.07□□□□□ -1.92
PRPF39-208ENST00000554785 PAX4O43316 350 aa3.07□□□□□ -1.92
PRPF39-208ENST00000554785 DKK1O94907 266 aa3.07□□□□□ -1.92
PRPF39-208ENST00000554785 TXLNAP40222 546 aa3.07□□□□□ -1.92
PRPF39-208ENST00000554785 C7orf43Q8WVR3 580 aa3.07□□□□□ -1.92
PRPF39-208ENST00000554785 GLMNQ92990 594 aa3.07□□□□□ -1.92
PRPF39-208ENST00000554785 NIFKQ9BYG3 293 aaKnown RBP3.07□□□□□ -1.92
PRPF39-208ENST00000554785 ZCCHC2Q9C0B9 1178 aaKnown RBP3.07□□□□□ -1.92
PRPF39-208ENST00000554785 CRISPLD1Q9H336 500 aa3.07□□□□□ -1.92
PRPF39-208ENST00000554785 ZFP64Q9NPA5 681 aa3.07□□□□□ -1.92
PRPF39-208ENST00000554785 SCHIP1Q9P0W5 487 aaPredicted RBP3.07□□□□□ -1.92
PRPF39-208ENST00000554785 SHISA8B8ZZ34 492 aa3.07□□□□□ -1.92
PRPF39-208ENST00000554785 GNB5O14775 395 aa3.07□□□□□ -1.92
PRPF39-208ENST00000554785 ATP9BO43861 1147 aa3.07□□□□□ -1.92
PRPF39-208ENST00000554785 GTF2E1P29083 439 aaPredicted RBP3.07□□□□□ -1.92
PRPF39-208ENST00000554785 PSME1Q06323 249 aa3.07□□□□□ -1.92
PRPF39-208ENST00000554785 PROSER2Q86WR7 435 aaPredicted RBP3.07□□□□□ -1.92
PRPF39-208ENST00000554785 TFIP11Q9UBB9 837 aaKnown RBP3.07□□□□□ -1.92
PRPF39-208ENST00000554785 MKRN1Q9UHC7 482 aaKnown RBP3.07□□□□□ -1.92
PRPF39-208ENST00000554785 A0A1W2PNR3 127 aa3.06□□□□□ -1.92
PRPF39-208ENST00000554785 LGR5O75473 907 aa3.06□□□□□ -1.92
PRPF39-208ENST00000554785 CSB-PGBD3P0DP91 1061 aa3.06□□□□□ -1.92
PRPF39-208ENST00000554785 SNRPNP63162 240 aaKnown RBP3.06□□□□□ -1.92
PRPF39-208ENST00000554785 GRIN2CQ14957 1233 aa3.06□□□□□ -1.92
PRPF39-208ENST00000554785 CCDC102BQ68D86 513 aa3.06□□□□□ -1.92
PRPF39-208ENST00000554785 PLEKHM2Q8IWE5 1019 aa3.06□□□□□ -1.92
PRPF39-208ENST00000554785 PGBD3Q8N328 593 aa3.06□□□□□ -1.92
PRPF39-208ENST00000554785 OGFOD1Q8N543 542 aa3.06□□□□□ -1.92
PRPF39-208ENST00000554785 TPCN2Q8NHX9 752 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms