RNA–Protein interactions for RNA: ENST00000554685.2

SHOX2-206, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-206ENST00000554685 PDE3AQ14432 1141 aa18.34■□□□□ 0.53
SHOX2-206ENST00000554685 LAMB4A4D0S4 1761 aa18.33■□□□□ 0.53
SHOX2-206ENST00000554685 STARD3NLO95772 234 aa18.33■□□□□ 0.52
SHOX2-206ENST00000554685 API5Q9BZZ5 524 aaKnown RBP18.33■□□□□ 0.52
SHOX2-206ENST00000554685 TCERG1O14776 1098 aaKnown RBP18.32■□□□□ 0.52
SHOX2-206ENST00000554685 ATF7IPQ6VMQ6 1270 aa18.32■□□□□ 0.52
SHOX2-206ENST00000554685 NECTIN2Q92692 538 aa18.32■□□□□ 0.52
SHOX2-206ENST00000554685 DDX21Q9NR30 783 aaKnown RBP eCLIP18.32■□□□□ 0.52
SHOX2-206ENST00000554685 HYPKQ9NX55 129 aa18.32■□□□□ 0.52
SHOX2-206ENST00000554685 NOB1Q9ULX3 412 aaKnown RBP18.32■□□□□ 0.52
SHOX2-206ENST00000554685 KAT6BQ8WYB5 2073 aa18.31■□□□□ 0.52
SHOX2-206ENST00000554685 LOC102724428A0A0B4J2F2 783 aa18.31■□□□□ 0.52
SHOX2-206ENST00000554685 PRAMEF22A3QJZ6 481 aa18.31■□□□□ 0.52
SHOX2-206ENST00000554685 PLIN1O60240 522 aa18.31■□□□□ 0.52
SHOX2-206ENST00000554685 HMGB2P26583 209 aaKnown RBP18.31■□□□□ 0.52
SHOX2-206ENST00000554685 SIK1P57059 783 aa18.31■□□□□ 0.52
SHOX2-206ENST00000554685 CHPF2Q9P2E5 772 aa18.31■□□□□ 0.52
SHOX2-206ENST00000554685 USP16Q9Y5T5 823 aa18.31■□□□□ 0.52
SHOX2-206ENST00000554685 C5P01031 1676 aa18.31■□□□□ 0.52
SHOX2-206ENST00000554685 ERICH6BQ5W0A0 696 aa18.3■□□□□ 0.52
SHOX2-206ENST00000554685 FTSJ3Q8IY81 847 aaKnown RBP18.3■□□□□ 0.52
SHOX2-206ENST00000554685 SBF2Q86WG5 1849 aa18.3■□□□□ 0.52
SHOX2-206ENST00000554685 BTAF1O14981 1849 aa18.29■□□□□ 0.52
SHOX2-206ENST00000554685 DNAJC10Q8IXB1 793 aa18.29■□□□□ 0.52
SHOX2-206ENST00000554685 DZIP1LQ8IYY4 767 aaKnown RBP18.29■□□□□ 0.52
SHOX2-206ENST00000554685 CICQ96RK0 1608 aaPredicted RBP18.29■□□□□ 0.52
SHOX2-206ENST00000554685 ZNF831Q5JPB2 1677 aa18.28■□□□□ 0.52
SHOX2-206ENST00000554685 CACNA1FO60840 1977 aa18.28■□□□□ 0.52
SHOX2-206ENST00000554685 ATP6V1AP38606 617 aa18.28■□□□□ 0.52
SHOX2-206ENST00000554685 FLIIQ13045 1269 aa18.28■□□□□ 0.52
SHOX2-206ENST00000554685 TRIM37O94972 964 aa18.27■□□□□ 0.52
SHOX2-206ENST00000554685 DDX58O95786 925 aaKnown RBP18.27■□□□□ 0.52
SHOX2-206ENST00000554685 TRIM27P14373 513 aa18.27■□□□□ 0.52
SHOX2-206ENST00000554685 FKBP5Q13451 457 aaPredicted RBP18.26■□□□□ 0.51
SHOX2-206ENST00000554685 FKBP8Q14318 412 aa18.26■□□□□ 0.51
SHOX2-206ENST00000554685 SLC4A9Q96Q91 983 aa18.26■□□□□ 0.51
SHOX2-206ENST00000554685 CYP19A1P11511 503 aaPredicted RBP18.25■□□□□ 0.51
SHOX2-206ENST00000554685 PDIA6Q15084 440 aa18.25■□□□□ 0.51
SHOX2-206ENST00000554685 PTF1AQ7RTS3 328 aa18.25■□□□□ 0.51
SHOX2-206ENST00000554685 TJP1Q07157 1748 aa18.24■□□□□ 0.51
SHOX2-206ENST00000554685 G2E3Q7L622 706 aa18.24■□□□□ 0.51
SHOX2-206ENST00000554685 CHMP4BQ9H444 224 aaKnown RBP18.24■□□□□ 0.51
SHOX2-206ENST00000554685 ABCC4O15439 1325 aa18.23■□□□□ 0.51
SHOX2-206ENST00000554685 MYL6BP14649 208 aa18.23■□□□□ 0.51
SHOX2-206ENST00000554685 IRX6P78412 446 aaPredicted RBP18.23■□□□□ 0.51
SHOX2-206ENST00000554685 PROSER3Q2NL68 480 aa18.23■□□□□ 0.51
SHOX2-206ENST00000554685 SLC27A3Q5K4L6 730 aa18.23■□□□□ 0.51
SHOX2-206ENST00000554685 NPM2Q86SE8 214 aaKnown RBP18.23■□□□□ 0.51
SHOX2-206ENST00000554685 CLUAP1Q96AJ1 413 aa18.23■□□□□ 0.51
SHOX2-206ENST00000554685 PHAXQ9H814 394 aaKnown RBP18.23■□□□□ 0.51
SHOX2-206ENST00000554685 CCNL1Q9UK58 526 aaPredicted RBP18.23■□□□□ 0.51
SHOX2-206ENST00000554685 PXDNLA1KZ92 1463 aa18.22■□□□□ 0.51
SHOX2-206ENST00000554685 ANXA1P04083 346 aa18.22■□□□□ 0.51
SHOX2-206ENST00000554685 A1BGP04217 495 aa18.22■□□□□ 0.51
SHOX2-206ENST00000554685 AAMPQ13685 434 aa18.22■□□□□ 0.51
SHOX2-206ENST00000554685 C20orf194Q5TEA3 1177 aa18.22■□□□□ 0.51
SHOX2-206ENST00000554685 PANK1Q8TE04 598 aa18.22■□□□□ 0.51
SHOX2-206ENST00000554685 CCDC87Q9NVE4 849 aa18.22■□□□□ 0.51
SHOX2-206ENST00000554685 GTF3C3Q9Y5Q9 886 aa18.22■□□□□ 0.51
SHOX2-206ENST00000554685 LY75O60449 1722 aa18.21■□□□□ 0.51
SHOX2-206ENST00000554685 DCAF8L1A6NGE4 600 aa18.21■□□□□ 0.51
SHOX2-206ENST00000554685 NBPF26B4DH59 902 aa18.21■□□□□ 0.51
SHOX2-206ENST00000554685 PLSCR1O15162 318 aa18.21■□□□□ 0.51
SHOX2-206ENST00000554685 ITPK1Q13572 414 aa18.21■□□□□ 0.51
SHOX2-206ENST00000554685 MVPQ14764 893 aaKnown RBP18.21■□□□□ 0.51
SHOX2-206ENST00000554685 NBPF14Q5TI25 921 aa18.21■□□□□ 0.51
SHOX2-206ENST00000554685 NBPF10Q6P3W6 841 aaKnown RBP18.21■□□□□ 0.51
SHOX2-206ENST00000554685 NBPF15Q8N660 670 aa18.21■□□□□ 0.51
SHOX2-206ENST00000554685 DDX19BQ9UMR2 479 aa18.21■□□□□ 0.51
SHOX2-206ENST00000554685 CNTNAP4Q9C0A0 1308 aa18.21■□□□□ 0.51
SHOX2-206ENST00000554685 IL6STP40189 918 aaPredicted RBP18.2■□□□□ 0.5
SHOX2-206ENST00000554685 CRKLP46109 303 aaKnown RBP18.2■□□□□ 0.5
SHOX2-206ENST00000554685 CCT4P50991 539 aaKnown RBP18.2■□□□□ 0.5
SHOX2-206ENST00000554685 KSR2Q6VAB6 950 aa18.2■□□□□ 0.5
SHOX2-206ENST00000554685 COPS6Q7L5N1 327 aa18.2■□□□□ 0.5
SHOX2-206ENST00000554685 LRP10Q7Z4F1 713 aa18.2■□□□□ 0.5
SHOX2-206ENST00000554685 XAGE3Q8WTP9 111 aa18.2■□□□□ 0.5
SHOX2-206ENST00000554685 CRBNQ96SW2 442 aa18.2■□□□□ 0.5
SHOX2-206ENST00000554685 APBA3O96018 575 aa18.19■□□□□ 0.5
SHOX2-206ENST00000554685 RLBP1P12271 317 aa18.19■□□□□ 0.5
SHOX2-206ENST00000554685 RC3H1Q5TC82 1133 aaKnown RBP18.19■□□□□ 0.5
SHOX2-206ENST00000554685 INTS3Q68E01 1043 aaKnown RBP18.19■□□□□ 0.5
SHOX2-206ENST00000554685 ITPRIPQ8IWB1 547 aa18.19■□□□□ 0.5
SHOX2-206ENST00000554685 DNAAF4Q8WXU2 420 aa18.19■□□□□ 0.5
SHOX2-206ENST00000554685 TNNQ9UQP3 1299 aa18.19■□□□□ 0.5
SHOX2-206ENST00000554685 COG6Q9Y2V7 657 aa18.19■□□□□ 0.5
SHOX2-206ENST00000554685 PI4KAP2A4QPH2 592 aa18.18■□□□□ 0.5
SHOX2-206ENST00000554685 AIMP1Q12904 312 aaKnown RBP18.18■□□□□ 0.5
SHOX2-206ENST00000554685 KIF6Q6ZMV9 814 aa18.18■□□□□ 0.5
SHOX2-206ENST00000554685 RIC3Q7Z5B4 369 aa18.18■□□□□ 0.5
SHOX2-206ENST00000554685 TMEM57Q8N5G2 664 aa18.18■□□□□ 0.5
SHOX2-206ENST00000554685 PI4KAP1Q8N8J0 262 aa18.18■□□□□ 0.5
SHOX2-206ENST00000554685 ZBTB1Q9Y2K1 713 aa18.18■□□□□ 0.5
SHOX2-206ENST00000554685 PIP4K2AP48426 406 aaPredicted RBP18.17■□□□□ 0.5
SHOX2-206ENST00000554685 SF3B2Q13435 895 aaKnown RBP18.17■□□□□ 0.5
SHOX2-206ENST00000554685 INTS5Q6P9B9 1019 aaKnown RBP18.17■□□□□ 0.5
SHOX2-206ENST00000554685 SLC4A10Q6U841 1118 aa18.17■□□□□ 0.5
SHOX2-206ENST00000554685 ANKRD13DQ6ZTN6 518 aa18.17■□□□□ 0.5
SHOX2-206ENST00000554685 LINC00116Q8NCU8 138 aa18.17■□□□□ 0.5
SHOX2-206ENST00000554685 PLBD2Q8NHP8 589 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms