RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 ZNF496Q96IT1 587 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-214ENST00000554604 FMNL2Q96PY5 1086 aa16.4■□□□□ 0.22
SHMT2-214ENST00000554604 SRP68Q9UHB9 627 aaKnown RBP16.4■□□□□ 0.22
SHMT2-214ENST00000554604 PARP3Q9Y6F1 533 aa16.4■□□□□ 0.22
SHMT2-214ENST00000554604 HTATSF1O43719 755 aaKnown RBP16.39■□□□□ 0.21
SHMT2-214ENST00000554604 TEX13AQ9BXU3 409 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-214ENST00000554604 KIF13BQ9NQT8 1826 aa16.39■□□□□ 0.21
SHMT2-214ENST00000554604 SOS1Q07889 1333 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-214ENST00000554604 USP42Q9H9J4 1324 aaKnown RBP16.39■□□□□ 0.21
SHMT2-214ENST00000554604 HEG1Q9ULI3 1381 aa16.38■□□□□ 0.21
SHMT2-214ENST00000554604 GRIN3BO60391 1043 aa16.38■□□□□ 0.21
SHMT2-214ENST00000554604 CANXP27824 592 aaKnown RBP16.38■□□□□ 0.21
SHMT2-214ENST00000554604 ZBTB1Q9Y2K1 713 aa16.38■□□□□ 0.21
SHMT2-214ENST00000554604 MYBBP1AQ9BQG0 1328 aaKnown RBP16.38■□□□□ 0.21
SHMT2-214ENST00000554604 MAPK8IP3Q9UPT6 1336 aa16.38■□□□□ 0.21
SHMT2-214ENST00000554604 COL15A1P39059 1388 aa16.38■□□□□ 0.21
SHMT2-214ENST00000554604 N4BP2Q86UW6 1770 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-214ENST00000554604 YBX3P16989 372 aaKnown RBP eCLIP16.37■□□□□ 0.213e-9■□□□□ 8.7
SHMT2-214ENST00000554604 DCTN1Q14203 1278 aa16.37■□□□□ 0.21
SHMT2-214ENST00000554604 FKBP8Q14318 412 aa16.37■□□□□ 0.21
SHMT2-214ENST00000554604 NPM2Q86SE8 214 aaKnown RBP16.36■□□□□ 0.21
SHMT2-214ENST00000554604 KCNQ3O43525 872 aa16.35■□□□□ 0.21
SHMT2-214ENST00000554604 USPL1Q5W0Q7 1092 aa16.35■□□□□ 0.21
SHMT2-214ENST00000554604 PLEKHF1Q96S99 279 aa16.35■□□□□ 0.21
SHMT2-214ENST00000554604 MRS2Q9HD23 443 aa16.35■□□□□ 0.21
SHMT2-214ENST00000554604 NARFQ9UHQ1 456 aa16.35■□□□□ 0.21
SHMT2-214ENST00000554604 WWC3Q9ULE0 1092 aa16.35■□□□□ 0.21
SHMT2-214ENST00000554604 ZNF330Q9Y3S2 320 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-214ENST00000554604 TAF7Q15545 349 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-214ENST00000554604 NFE2L2Q16236 605 aa16.34■□□□□ 0.21
SHMT2-214ENST00000554604 CCDC184Q52MB2 194 aa16.34■□□□□ 0.21
SHMT2-214ENST00000554604 A0A087WZG4 1122 aa16.33■□□□□ 0.2
SHMT2-214ENST00000554604 TGFB2P61812 414 aa16.33■□□□□ 0.2
SHMT2-214ENST00000554604 C10orf71Q711Q0 1435 aa16.33■□□□□ 0.2
SHMT2-214ENST00000554604 AFDNP55196 1824 aaKnown RBP16.33■□□□□ 0.2
SHMT2-214ENST00000554604 EIF5P55010 431 aaKnown RBP16.32■□□□□ 0.2
SHMT2-214ENST00000554604 KIAA1551Q9HCM1 1747 aa16.31■□□□□ 0.2
SHMT2-214ENST00000554604 PXDNLA1KZ92 1463 aa16.31■□□□□ 0.2
SHMT2-214ENST00000554604 A0A0G2JLW4 131 aa16.31■□□□□ 0.2
SHMT2-214ENST00000554604 A1BGP04217 495 aa16.31■□□□□ 0.2
SHMT2-214ENST00000554604 SNRPA1P09661 255 aaKnown RBP16.31■□□□□ 0.2
SHMT2-214ENST00000554604 DDR1Q08345 913 aa16.31■□□□□ 0.2
SHMT2-214ENST00000554604 WDR43Q15061 677 aaKnown RBP eCLIP16.31■□□□□ 0.2
SHMT2-214ENST00000554604 ZNF784Q8NCA9 323 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-214ENST00000554604 POLRMTO00411 1230 aaKnown RBP16.3■□□□□ 0.2
SHMT2-214ENST00000554604 TM4SF1P30408 202 aa16.3■□□□□ 0.2
SHMT2-214ENST00000554604 IL6STP40189 918 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-214ENST00000554604 PNISRQ8TF01 805 aaKnown RBP16.3■□□□□ 0.2
SHMT2-214ENST00000554604 MIS18AQ9NYP9 233 aa16.3■□□□□ 0.2
SHMT2-214ENST00000554604 USP16Q9Y5T5 823 aa16.3■□□□□ 0.2
SHMT2-214ENST00000554604 BRCA1P38398 1863 aaKnown RBP16.29■□□□□ 0.2
SHMT2-214ENST00000554604 KDM3BQ7LBC6 1761 aa16.29■□□□□ 0.2
SHMT2-214ENST00000554604 NFIXQ14938 502 aa16.29■□□□□ 0.2
SHMT2-214ENST00000554604 TBC1D2BQ9UPU7 963 aa16.29■□□□□ 0.2
SHMT2-214ENST00000554604 SCN7AQ01118 1682 aa16.28■□□□□ 0.2
SHMT2-214ENST00000554604 PRAMEF22A3QJZ6 481 aa16.28■□□□□ 0.2
SHMT2-214ENST00000554604 DPEP1P16444 411 aa16.28■□□□□ 0.2
SHMT2-214ENST00000554604 RIPK4P57078 832 aa16.28■□□□□ 0.2
SHMT2-214ENST00000554604 HNRNPUQ00839 825 aaKnown RBP eCLIP16.28■□□□□ 0.2
SHMT2-214ENST00000554604 THUMPD2Q9BTF0 503 aaKnown RBP16.28■□□□□ 0.2
SHMT2-214ENST00000554604 BCL2L12Q9HB09 334 aa16.28■□□□□ 0.2
SHMT2-214ENST00000554604 BCS1LQ9Y276 419 aa16.28■□□□□ 0.2
SHMT2-214ENST00000554604 LAMB4A4D0S4 1761 aa16.28■□□□□ 0.2
SHMT2-214ENST00000554604 BICDL1Q6ZP65 573 aa16.27■□□□□ 0.2
SHMT2-214ENST00000554604 SERPINB2P05120 415 aa16.26■□□□□ 0.19
SHMT2-214ENST00000554604 TMPOP42166 694 aaKnown RBP16.26■□□□□ 0.19
SHMT2-214ENST00000554604 PIP4K2AP48426 406 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-214ENST00000554604 LMOD3Q0VAK6 560 aa16.26■□□□□ 0.19
SHMT2-214ENST00000554604 CCDC146Q8IYE0 955 aa16.26■□□□□ 0.19
SHMT2-214ENST00000554604 ARFGEF1Q9Y6D6 1849 aa16.26■□□□□ 0.19
SHMT2-214ENST00000554604 NRXN2Q9P2S2 1712 aa16.25■□□□□ 0.19
SHMT2-214ENST00000554604 DZIP3Q86Y13 1208 aaKnown RBP16.25■□□□□ 0.19
SHMT2-214ENST00000554604 PIM2Q9P1W9 311 aa16.25■□□□□ 0.19
SHMT2-214ENST00000554604 BCORQ6W2J9 1755 aa16.25■□□□□ 0.19
SHMT2-214ENST00000554604 NEUROD2Q15784 382 aa16.24■□□□□ 0.19
SHMT2-214ENST00000554604 TBC1D9BQ66K14 1250 aa16.24■□□□□ 0.19
SHMT2-214ENST00000554604 FAM9BQ8IZU0 186 aa16.24■□□□□ 0.19
SHMT2-214ENST00000554604 RUNDC1Q96C34 613 aa16.24■□□□□ 0.19
SHMT2-214ENST00000554604 RRP7AQ9Y3A4 280 aaKnown RBP16.24■□□□□ 0.19
SHMT2-214ENST00000554604 NPHP1O15259 732 aa16.23■□□□□ 0.19
SHMT2-214ENST00000554604 CHRNA5P30532 468 aa16.23■□□□□ 0.19
SHMT2-214ENST00000554604 DALRD3Q5D0E6 543 aaKnown RBP16.23■□□□□ 0.19
SHMT2-214ENST00000554604 SETDB2Q96T68 719 aa16.23■□□□□ 0.19
SHMT2-214ENST00000554604 TSPYL4Q9UJ04 414 aa16.23■□□□□ 0.19
SHMT2-214ENST00000554604 ADAMTS8Q9UP79 889 aa16.23■□□□□ 0.19
SHMT2-214ENST00000554604 ZBED9Q6R2W3 1325 aa16.22■□□□□ 0.19
SHMT2-214ENST00000554604 GIGYF1O75420 1035 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-214ENST00000554604 CAMTA2O94983 1202 aa16.22■□□□□ 0.19
SHMT2-214ENST00000554604 KCNA3P22001 575 aa16.22■□□□□ 0.19
SHMT2-214ENST00000554604 EIF4A1P60842 406 aaKnown RBP16.22■□□□□ 0.19
SHMT2-214ENST00000554604 ARHGAP27Q6ZUM4 889 aa16.22■□□□□ 0.19
SHMT2-214ENST00000554604 ZNF652Q9Y2D9 606 aa16.22■□□□□ 0.19
SHMT2-214ENST00000554604 CARMIL3Q8ND23 1372 aa16.22■□□□□ 0.19
SHMT2-214ENST00000554604 NBPF26B4DH59 902 aa16.21■□□□□ 0.19
SHMT2-214ENST00000554604 NBPF10Q6P3W6 841 aaKnown RBP16.21■□□□□ 0.19
SHMT2-214ENST00000554604 NBPF15Q8N660 670 aa16.21■□□□□ 0.19
SHMT2-214ENST00000554604 DLEC1Q9Y238 1755 aa16.21■□□□□ 0.18
SHMT2-214ENST00000554604 ANKRD31Q8N7Z5 1873 aa16.2■□□□□ 0.18
SHMT2-214ENST00000554604 H0YIN7 160 aa16.19■□□□□ 0.18
SHMT2-214ENST00000554604 CLEC4GQ6UXB4 293 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms