RNA–Protein interactions for RNA: ENST00000554270.5

PTPN21-205, Transcript of protein tyrosine phosphatase, non-receptor type 21, human

TSL 1 (best)

Gene PTPN21, Length 4,008 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN21-205	ENST00000554270	NECAB1	Q8N987	351 aa		13.77	□□□□□ -0.21
PTPN21-205	ENST00000554270	USP44	Q9H0E7	712 aa		13.77	□□□□□ -0.21
PTPN21-205	ENST00000554270	TTC12	Q9H892	705 aa	Predicted RBP	13.77	□□□□□ -0.21
PTPN21-205	ENST00000554270	AK9	Q5TCS8	1911 aa		13.77	□□□□□ -0.21
PTPN21-205	ENST00000554270	RHPN1	Q8TCX5	695 aa		13.77	□□□□□ -0.21
PTPN21-205	ENST00000554270	MYO5B	Q9ULV0	1848 aa		13.77	□□□□□ -0.21
PTPN21-205	ENST00000554270	TPM2	P07951	284 aa		13.76	□□□□□ -0.21
PTPN21-205	ENST00000554270	GIMAP6	Q6P9H5	292 aa		13.76	□□□□□ -0.21
PTPN21-205	ENST00000554270	CCDC39	Q9UFE4	941 aa		13.76	□□□□□ -0.21
PTPN21-205	ENST00000554270	PHF14	O94880	888 aa		13.76	□□□□□ -0.21
PTPN21-205	ENST00000554270	SLC39A6	Q13433	755 aa		13.76	□□□□□ -0.21
PTPN21-205	ENST00000554270	LRSAM1	Q6UWE0	723 aa		13.76	□□□□□ -0.21
PTPN21-205	ENST00000554270	AACS	Q86V21	672 aa		13.76	□□□□□ -0.21
PTPN21-205	ENST00000554270	NLRP2	Q9NX02	1062 aa		13.76	□□□□□ -0.21
PTPN21-205	ENST00000554270	ATP7B	P35670	1465 aa		13.76	□□□□□ -0.21
PTPN21-205	ENST00000554270	SETD1B	Q9UPS6	1966 aa	Known RBP	13.76	□□□□□ -0.21
PTPN21-205	ENST00000554270	FLT4	P35916	1363 aa		13.76	□□□□□ -0.21
PTPN21-205	ENST00000554270	KLHDC4	Q8TBB5	520 aa		13.75	□□□□□ -0.21
PTPN21-205	ENST00000554270	FAM173B	Q6P4H8	233 aa		13.75	□□□□□ -0.21
PTPN21-205	ENST00000554270	CNTROB	Q8N137	903 aa		13.75	□□□□□ -0.21
PTPN21-205	ENST00000554270	IFT172	Q9UG01	1749 aa		13.75	□□□□□ -0.21
PTPN21-205	ENST00000554270	MAP2	P11137	1827 aa	Known RBP	13.75	□□□□□ -0.21
PTPN21-205	ENST00000554270	RIC3	Q7Z5B4	369 aa		13.75	□□□□□ -0.21
PTPN21-205	ENST00000554270	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.75	□□□□□ -0.21
PTPN21-205	ENST00000554270	DNAAF4	Q8WXU2	420 aa		13.75	□□□□□ -0.21
PTPN21-205	ENST00000554270	BOLA2	Q9H3K6	86 aa		13.75	□□□□□ -0.21
PTPN21-205	ENST00000554270	AATK	Q6ZMQ8	1374 aa		13.75	□□□□□ -0.21
PTPN21-205	ENST00000554270	TMEM2	Q9UHN6	1383 aa		13.75	□□□□□ -0.21
PTPN21-205	ENST00000554270	PRAMEF22	A3QJZ6	481 aa		13.74	□□□□□ -0.21
PTPN21-205	ENST00000554270	ZDHHC9	Q9Y397	364 aa		13.74	□□□□□ -0.21
PTPN21-205	ENST00000554270	ADGRB2	O60241	1585 aa		13.74	□□□□□ -0.21
PTPN21-205	ENST00000554270	PLEKHG3	A1L390	1219 aa		13.74	□□□□□ -0.21
PTPN21-205	ENST00000554270	NBPF6	Q5VWK0	638 aa		13.74	□□□□□ -0.21
PTPN21-205	ENST00000554270	NBPF4	Q96M43	638 aa		13.74	□□□□□ -0.21
PTPN21-205	ENST00000554270	IL25	Q9H293	177 aa		13.74	□□□□□ -0.21
PTPN21-205	ENST00000554270	PHF8	Q9UPP1	1060 aa		13.74	□□□□□ -0.21
PTPN21-205	ENST00000554270	CPSF1	Q10570	1443 aa	Known RBP	13.74	□□□□□ -0.21
PTPN21-205	ENST00000554270	TFIP11	Q9UBB9	837 aa	Known RBP	13.74	□□□□□ -0.21
PTPN21-205	ENST00000554270	MAP3K2	Q9Y2U5	619 aa		13.74	□□□□□ -0.21
PTPN21-205	ENST00000554270	WDR33	Q9C0J8	1336 aa	Known RBP	13.74	□□□□□ -0.21
PTPN21-205	ENST00000554270	DDIT3	P35638	169 aa		13.73	□□□□□ -0.21
PTPN21-205	ENST00000554270	MCM2	P49736	904 aa		13.73	□□□□□ -0.21
PTPN21-205	ENST00000554270	ZNF592	Q92610	1267 aa		13.73	□□□□□ -0.21
PTPN21-205	ENST00000554270	PPP6R1	Q9UPN7	881 aa		13.73	□□□□□ -0.21
PTPN21-205	ENST00000554270	NDUFB9	Q9Y6M9	179 aa		13.73	□□□□□ -0.21
PTPN21-205	ENST00000554270	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.73	□□□□□ -0.21
PTPN21-205	ENST00000554270	ZKSCAN1	P17029	563 aa	Predicted RBP	13.73	□□□□□ -0.21
PTPN21-205	ENST00000554270	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
PTPN21-205	ENST00000554270	MED14	O60244	1454 aa		13.73	□□□□□ -0.21
PTPN21-205	ENST00000554270	KDM4A	O75164	1064 aa		13.72	□□□□□ -0.21
PTPN21-205	ENST00000554270	CKAP2L	Q8IYA6	745 aa		13.72	□□□□□ -0.21
PTPN21-205	ENST00000554270	FSD1	Q9BTV5	496 aa		13.72	□□□□□ -0.21
PTPN21-205	ENST00000554270	CFAP74	Q9C0B2	1584 aa		13.72	□□□□□ -0.21
PTPN21-205	ENST00000554270	SOS1	Q07889	1333 aa	Predicted RBP	13.72	□□□□□ -0.21
PTPN21-205	ENST00000554270	BICD2	Q8TD16	824 aa		13.72	□□□□□ -0.21
PTPN21-205	ENST00000554270	KIF1BP	Q96EK5	621 aa		13.72	□□□□□ -0.21
PTPN21-205	ENST00000554270	GPATCH3	Q96I76	525 aa		13.71	□□□□□ -0.21
PTPN21-205	ENST00000554270	NEURL4	Q96JN8	1562 aa		13.71	□□□□□ -0.21
PTPN21-205	ENST00000554270	ADCY5	O95622	1261 aa		13.71	□□□□□ -0.21
PTPN21-205	ENST00000554270	AK2	P54819	239 aa		13.71	□□□□□ -0.21
PTPN21-205	ENST00000554270	ZNF445	P59923	1031 aa		13.71	□□□□□ -0.21
PTPN21-205	ENST00000554270	DNM1	Q05193	864 aa	Known RBP	13.71	□□□□□ -0.21
PTPN21-205	ENST00000554270	CHAF1A	Q13111	956 aa	Predicted RBP	13.71	□□□□□ -0.21
PTPN21-205	ENST00000554270	DNAJC2	Q99543	621 aa	Known RBP	13.71	□□□□□ -0.21
PTPN21-205	ENST00000554270	OFD1	O75665	1012 aa		13.71	□□□□□ -0.22
PTPN21-205	ENST00000554270	DDX11	Q96FC9	970 aa		13.71	□□□□□ -0.22
PTPN21-205	ENST00000554270	PDRG1	Q9NUG6	133 aa		13.71	□□□□□ -0.22
PTPN21-205	ENST00000554270	ZKSCAN5	Q9Y2L8	839 aa		13.71	□□□□□ -0.22
PTPN21-205	ENST00000554270	ATP10D	Q9P241	1426 aa		13.71	□□□□□ -0.22
PTPN21-205	ENST00000554270	TMEM131L	A2VDJ0	1609 aa		13.7	□□□□□ -0.22
PTPN21-205	ENST00000554270	PROSER3	Q2NL68	480 aa		13.7	□□□□□ -0.22
PTPN21-205	ENST00000554270	LARP1B	Q659C4	914 aa	Known RBP	13.7	□□□□□ -0.22
PTPN21-205	ENST00000554270	USP6	P35125	1406 aa		13.7	□□□□□ -0.22
PTPN21-205	ENST00000554270	RASEF	Q8IZ41	740 aa		13.7	□□□□□ -0.22
PTPN21-205	ENST00000554270	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.7	□□□□□ -0.22
PTPN21-205	ENST00000554270	STX6	O43752	255 aa		13.69	□□□□□ -0.22
PTPN21-205	ENST00000554270	GJB2	P29033	226 aa		13.69	□□□□□ -0.22
PTPN21-205	ENST00000554270	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.69	□□□□□ -0.22
PTPN21-205	ENST00000554270	RUFY2	Q8WXA3	655 aa		13.69	□□□□□ -0.22
PTPN21-205	ENST00000554270	ORAI2	Q96SN7	254 aa		13.69	□□□□□ -0.22
PTPN21-205	ENST00000554270	KIAA0232	Q92628	1395 aa		13.69	□□□□□ -0.22
PTPN21-205	ENST00000554270	CSPP1	Q1MSJ5	1256 aa		13.69	□□□□□ -0.22
PTPN21-205	ENST00000554270	EDC3	Q96F86	508 aa	Known RBP	13.69	□□□□□ -0.22
PTPN21-205	ENST00000554270	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
PTPN21-205	ENST00000554270		H3BQV1	296 aa		13.69	□□□□□ -0.22
PTPN21-205	ENST00000554270	IFFO2	Q5TF58	517 aa		13.69	□□□□□ -0.22
PTPN21-205	ENST00000554270	NEUROD6	Q96NK8	337 aa		13.69	□□□□□ -0.22
PTPN21-205	ENST00000554270	PPP1R9B	Q96SB3	815 aa		13.69	□□□□□ -0.22
PTPN21-205	ENST00000554270	ATP6V1D	Q9Y5K8	247 aa		13.69	□□□□□ -0.22
PTPN21-205	ENST00000554270	SBNO1	A3KN83	1393 aa		13.69	□□□□□ -0.22
PTPN21-205	ENST00000554270	ATP5J2-PTCD1	G3V325	749 aa		13.68	□□□□□ -0.22
PTPN21-205	ENST00000554270	PTCD1	O75127	700 aa	Known RBP	13.68	□□□□□ -0.22
PTPN21-205	ENST00000554270	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.68	□□□□□ -0.22
PTPN21-205	ENST00000554270	CYP46A1	Q9Y6A2	500 aa		13.68	□□□□□ -0.22
PTPN21-205	ENST00000554270	TTC21A	Q8NDW8	1320 aa		13.68	□□□□□ -0.22
PTPN21-205	ENST00000554270	MAP3K5	Q99683	1374 aa		13.68	□□□□□ -0.22
PTPN21-205	ENST00000554270	PREX1	Q8TCU6	1659 aa		13.68	□□□□□ -0.22
PTPN21-205	ENST00000554270	DDX17	Q92841	729 aa	Known RBP	13.68	□□□□□ -0.22
PTPN21-205	ENST00000554270	SYT1	P21579	422 aa		13.68	□□□□□ -0.22
PTPN21-205	ENST00000554270	LRRC2	Q9BYS8	371 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms