RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 NCBP3Q53F19 620 aaKnown RBP18.83■□□□□ 0.6
CCDC88C-207ENST00000554051 INTS5Q6P9B9 1019 aaKnown RBP18.82■□□□□ 0.6
CCDC88C-207ENST00000554051 NPM2Q86SE8 214 aaKnown RBP18.82■□□□□ 0.6
CCDC88C-207ENST00000554051 SCN7AQ01118 1682 aa18.82■□□□□ 0.6
CCDC88C-207ENST00000554051 USP42Q9H9J4 1324 aaKnown RBP18.81■□□□□ 0.6
CCDC88C-207ENST00000554051 AMIGO3Q86WK7 504 aa18.81■□□□□ 0.6
CCDC88C-207ENST00000554051 NLGN1Q8N2Q7 840 aa18.81■□□□□ 0.6
CCDC88C-207ENST00000554051 TSPYL4Q9UJ04 414 aa18.81■□□□□ 0.6
CCDC88C-207ENST00000554051 RRP7AQ9Y3A4 280 aaKnown RBP18.81■□□□□ 0.6
CCDC88C-207ENST00000554051 NEUROD2Q15784 382 aa18.8■□□□□ 0.6
CCDC88C-207ENST00000554051 ARHGEF1Q92888 912 aaKnown RBP18.8■□□□□ 0.6
CCDC88C-207ENST00000554051 THUMPD2Q9BTF0 503 aaKnown RBP18.8■□□□□ 0.6
CCDC88C-207ENST00000554051 ZBTB1Q9Y2K1 713 aa18.8■□□□□ 0.6
CCDC88C-207ENST00000554051 APAF1O14727 1248 aa18.79■□□□□ 0.6
CCDC88C-207ENST00000554051 IL6STP40189 918 aaPredicted RBP18.79■□□□□ 0.6
CCDC88C-207ENST00000554051 CCDC184Q52MB2 194 aa18.79■□□□□ 0.6
CCDC88C-207ENST00000554051 NGEFQ8N5V2 710 aa18.79■□□□□ 0.6
CCDC88C-207ENST00000554051 TRIM35Q9UPQ4 493 aa18.79■□□□□ 0.6
CCDC88C-207ENST00000554051 ERBB4Q15303 1308 aa18.78■□□□□ 0.6
CCDC88C-207ENST00000554051 KCNQ3O43525 872 aa18.78■□□□□ 0.6
CCDC88C-207ENST00000554051 ZPR1O75312 459 aa18.78■□□□□ 0.6
CCDC88C-207ENST00000554051 EIF4A1P60842 406 aaKnown RBP18.77■□□□□ 0.6
CCDC88C-207ENST00000554051 CCDC27Q2M243 656 aa18.77■□□□□ 0.6
CCDC88C-207ENST00000554051 MSL1Q68DK7 614 aa18.77■□□□□ 0.6
CCDC88C-207ENST00000554051 BCORQ6W2J9 1755 aa18.76■□□□□ 0.59
CCDC88C-207ENST00000554051 RGL2O15211 777 aa18.76■□□□□ 0.59
CCDC88C-207ENST00000554051 EIF5P55010 431 aaKnown RBP18.76■□□□□ 0.59
CCDC88C-207ENST00000554051 NARFQ9UHQ1 456 aa18.76■□□□□ 0.59
CCDC88C-207ENST00000554051 DCAF8L1A6NGE4 600 aa18.75■□□□□ 0.59
CCDC88C-207ENST00000554051 CCER2I3L3R5 266 aa18.75■□□□□ 0.59
CCDC88C-207ENST00000554051 GIGYF1O75420 1035 aaPredicted RBP18.75■□□□□ 0.59
CCDC88C-207ENST00000554051 GYS1P13807 737 aa18.75■□□□□ 0.59
CCDC88C-207ENST00000554051 CANXP27824 592 aaKnown RBP18.75■□□□□ 0.59
CCDC88C-207ENST00000554051 CFAP44Q96MT7 982 aa18.75■□□□□ 0.59
CCDC88C-207ENST00000554051 FHDC1Q9C0D6 1143 aaPredicted RBP18.75■□□□□ 0.59
CCDC88C-207ENST00000554051 IFT57Q9NWB7 429 aa18.75■□□□□ 0.59
CCDC88C-207ENST00000554051 CHL1O00533 1208 aa18.74■□□□□ 0.59
CCDC88C-207ENST00000554051 HOXB7P09629 217 aa18.74■□□□□ 0.59
CCDC88C-207ENST00000554051 GNAI1P63096 354 aa18.74■□□□□ 0.59
CCDC88C-207ENST00000554051 MIS18AQ9NYP9 233 aa18.74■□□□□ 0.59
CCDC88C-207ENST00000554051 CD2APQ9Y5K6 639 aa18.74■□□□□ 0.59
CCDC88C-207ENST00000554051 MMP10P09238 476 aa18.73■□□□□ 0.59
CCDC88C-207ENST00000554051 SYT17Q9BSW7 474 aa18.72■□□□□ 0.59
CCDC88C-207ENST00000554051 CHMP4AQ9BY43 222 aa18.72■□□□□ 0.59
CCDC88C-207ENST00000554051 USP16Q9Y5T5 823 aa18.72■□□□□ 0.59
CCDC88C-207ENST00000554051 PARP3Q9Y6F1 533 aa18.72■□□□□ 0.59
CCDC88C-207ENST00000554051 KIF13BQ9NQT8 1826 aa18.72■□□□□ 0.59
CCDC88C-207ENST00000554051 USPL1Q5W0Q7 1092 aa18.71■□□□□ 0.59
CCDC88C-207ENST00000554051 SMIM5Q71RC9 77 aa18.71■□□□□ 0.59
CCDC88C-207ENST00000554051 ZNF652Q9Y2D9 606 aa18.71■□□□□ 0.59
CCDC88C-207ENST00000554051 ZNF330Q9Y3S2 320 aaPredicted RBP18.71■□□□□ 0.59
CCDC88C-207ENST00000554051 C10orf71Q711Q0 1435 aa18.71■□□□□ 0.59
CCDC88C-207ENST00000554051 IL16Q14005 1332 aa18.71■□□□□ 0.59
CCDC88C-207ENST00000554051 A1BGP04217 495 aa18.7■□□□□ 0.58
CCDC88C-207ENST00000554051 SRP68Q9UHB9 627 aaKnown RBP18.7■□□□□ 0.58
CCDC88C-207ENST00000554051 LAS1LQ9Y4W2 734 aaKnown RBP18.7■□□□□ 0.58
CCDC88C-207ENST00000554051 KLHL34Q8N239 644 aa18.69■□□□□ 0.58
CCDC88C-207ENST00000554051 PRAMEF22A3QJZ6 481 aa18.68■□□□□ 0.58
CCDC88C-207ENST00000554051 ZNF853P0CG23 659 aa18.68■□□□□ 0.58
CCDC88C-207ENST00000554051 FKBP8Q14318 412 aa18.68■□□□□ 0.58
CCDC88C-207ENST00000554051 DZIP3Q86Y13 1208 aaKnown RBP18.68■□□□□ 0.58
CCDC88C-207ENST00000554051 FAM9BQ8IZU0 186 aa18.68■□□□□ 0.58
CCDC88C-207ENST00000554051 NRXN2Q9P2S2 1712 aa18.68■□□□□ 0.58
CCDC88C-207ENST00000554051 DIEXFQ68CQ4 756 aaKnown RBP18.67■□□□□ 0.58
CCDC88C-207ENST00000554051 CLEC4GQ6UXB4 293 aa18.67■□□□□ 0.58
CCDC88C-207ENST00000554051 WWC1Q8IX03 1113 aa18.67■□□□□ 0.58
CCDC88C-207ENST00000554051 MBIPQ9NS73 344 aa18.67■□□□□ 0.58
CCDC88C-207ENST00000554051 CARMIL3Q8ND23 1372 aa18.67■□□□□ 0.58
CCDC88C-207ENST00000554051 NBPF26B4DH59 902 aa18.65■□□□□ 0.58
CCDC88C-207ENST00000554051 NBPF10Q6P3W6 841 aaKnown RBP18.65■□□□□ 0.58
CCDC88C-207ENST00000554051 KIF6Q6ZMV9 814 aa18.65■□□□□ 0.58
CCDC88C-207ENST00000554051 NBPF15Q8N660 670 aa18.65■□□□□ 0.58
CCDC88C-207ENST00000554051 POLRMTO00411 1230 aaKnown RBP18.64■□□□□ 0.57
CCDC88C-207ENST00000554051 CAMTA2O94983 1202 aa18.64■□□□□ 0.57
CCDC88C-207ENST00000554051 TM4SF1P30408 202 aa18.64■□□□□ 0.57
CCDC88C-207ENST00000554051 WDR63Q8IWG1 891 aa18.64■□□□□ 0.57
CCDC88C-207ENST00000554051 BCL2L12Q9HB09 334 aa18.64■□□□□ 0.57
CCDC88C-207ENST00000554051 ERVV-1B6SEH8 477 aa18.63■□□□□ 0.57
CCDC88C-207ENST00000554051 TGFB2P61812 414 aa18.63■□□□□ 0.57
CCDC88C-207ENST00000554051 DDR1Q08345 913 aa18.63■□□□□ 0.57
CCDC88C-207ENST00000554051 NFIXQ14938 502 aa18.63■□□□□ 0.57
CCDC88C-207ENST00000554051 HDGFL1Q5TGJ6 251 aa18.63■□□□□ 0.57
CCDC88C-207ENST00000554051 TBC1D2BQ9UPU7 963 aa18.63■□□□□ 0.57
CCDC88C-207ENST00000554051 ATP10DQ9P241 1426 aa18.62■□□□□ 0.57
CCDC88C-207ENST00000554051 PXDNLA1KZ92 1463 aa18.62■□□□□ 0.57
CCDC88C-207ENST00000554051 AFDNP55196 1824 aaKnown RBP18.61■□□□□ 0.57
CCDC88C-207ENST00000554051 KIAA1551Q9HCM1 1747 aa18.61■□□□□ 0.57
CCDC88C-207ENST00000554051 MAP3K15Q6ZN16 1313 aa18.61■□□□□ 0.57
CCDC88C-207ENST00000554051 EIF2S2P20042 333 aaKnown RBP18.61■□□□□ 0.57
CCDC88C-207ENST00000554051 SETDB2Q96T68 719 aa18.61■□□□□ 0.57
CCDC88C-207ENST00000554051 SRCAPQ6ZRS2 3230 aa18.61■□□□□ 0.57
CCDC88C-207ENST00000554051 IBTKQ9P2D0 1353 aaPredicted RBP18.6■□□□□ 0.57
CCDC88C-207ENST00000554051 PIP4K2AP48426 406 aaPredicted RBP18.6■□□□□ 0.57
CCDC88C-207ENST00000554051 DUSP27Q5VZP5 1158 aa18.6■□□□□ 0.57
CCDC88C-207ENST00000554051 NLGN2Q8NFZ4 835 aa18.6■□□□□ 0.57
CCDC88C-207ENST00000554051 DDX21Q9NR30 783 aaKnown RBP eCLIP18.6■□□□□ 0.57
CCDC88C-207ENST00000554051 DBF4Q9UBU7 674 aaPredicted RBP18.6■□□□□ 0.57
CCDC88C-207ENST00000554051 PDZRN3Q9UPQ7 1066 aa18.6■□□□□ 0.57
CCDC88C-207ENST00000554051 MYL6BP14649 208 aa18.59■□□□□ 0.57
CCDC88C-207ENST00000554051 MYH16Q9H6N6 1097 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms