RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 HEG1Q9ULI3 1381 aa24.32■■□□□ 1.48
SHMT2-206ENST00000553529 USPL1Q5W0Q7 1092 aa24.32■■□□□ 1.48
SHMT2-206ENST00000553529 TTC5Q8N0Z6 440 aa24.32■■□□□ 1.48
SHMT2-206ENST00000553529 MIS18AQ9NYP9 233 aa24.32■■□□□ 1.48
SHMT2-206ENST00000553529 COL15A1P39059 1388 aa24.31■■□□□ 1.48
SHMT2-206ENST00000553529 C10orf71Q711Q0 1435 aa24.31■■□□□ 1.48
SHMT2-206ENST00000553529 BCL2L12Q9HB09 334 aa24.31■■□□□ 1.48
SHMT2-206ENST00000553529 BTBD11A6QL63 1104 aa24.3■■□□□ 1.48
SHMT2-206ENST00000553529 NLGN1Q8N2Q7 840 aa24.29■■□□□ 1.48
SHMT2-206ENST00000553529 ZNF784Q8NCA9 323 aaPredicted RBP24.29■■□□□ 1.48
SHMT2-206ENST00000553529 A0A0G2JLW4 131 aa24.28■■□□□ 1.48
SHMT2-206ENST00000553529 A1BGP04217 495 aa24.27■■□□□ 1.48
SHMT2-206ENST00000553529 ZNF330Q9Y3S2 320 aaPredicted RBP24.27■■□□□ 1.48
SHMT2-206ENST00000553529 VSIG10Q8N0Z9 540 aa24.26■■□□□ 1.47
SHMT2-206ENST00000553529 USP16Q9Y5T5 823 aa24.26■■□□□ 1.47
SHMT2-206ENST00000553529 AFDNP55196 1824 aaKnown RBP24.26■■□□□ 1.47
SHMT2-206ENST00000553529 DPEP1P16444 411 aa24.25■■□□□ 1.47
SHMT2-206ENST00000553529 RTF1Q92541 710 aaKnown RBP24.25■■□□□ 1.47
SHMT2-206ENST00000553529 PARP3Q9Y6F1 533 aa24.25■■□□□ 1.47
SHMT2-206ENST00000553529 POLRMTO00411 1230 aaKnown RBP24.24■■□□□ 1.47
SHMT2-206ENST00000553529 RALBP1Q15311 655 aa24.24■■□□□ 1.47
SHMT2-206ENST00000553529 NFIXQ14938 502 aa24.23■■□□□ 1.47
SHMT2-206ENST00000553529 CCDC146Q8IYE0 955 aa24.23■■□□□ 1.47
SHMT2-206ENST00000553529 FMNL2Q96PY5 1086 aa24.23■■□□□ 1.47
SHMT2-206ENST00000553529 SCN7AQ01118 1682 aa24.23■■□□□ 1.47
SHMT2-206ENST00000553529 BRCA1P38398 1863 aaKnown RBP24.23■■□□□ 1.47
SHMT2-206ENST00000553529 KDM3BQ7LBC6 1761 aa24.22■■□□□ 1.47
SHMT2-206ENST00000553529 ZPR1O75312 459 aa24.22■■□□□ 1.47
SHMT2-206ENST00000553529 TM4SF1P30408 202 aa24.22■■□□□ 1.47
SHMT2-206ENST00000553529 EIF5P55010 431 aaKnown RBP24.22■■□□□ 1.47
SHMT2-206ENST00000553529 BICDL1Q6ZP65 573 aa24.22■■□□□ 1.47
SHMT2-206ENST00000553529 NARFQ9UHQ1 456 aa24.22■■□□□ 1.47
SHMT2-206ENST00000553529 TBC1D2BQ9UPU7 963 aa24.22■■□□□ 1.47
SHMT2-206ENST00000553529 CARMIL3Q8ND23 1372 aa24.21■■□□□ 1.47
SHMT2-206ENST00000553529 MYBBP1AQ9BQG0 1328 aaKnown RBP24.21■■□□□ 1.47
SHMT2-206ENST00000553529 CHRNA5P30532 468 aa24.21■■□□□ 1.47
SHMT2-206ENST00000553529 NFE2L2Q16236 605 aa24.21■■□□□ 1.47
SHMT2-206ENST00000553529 RRP7AQ9Y3A4 280 aaKnown RBP24.21■■□□□ 1.47
SHMT2-206ENST00000553529 KCNA3P22001 575 aa24.2■■□□□ 1.46
SHMT2-206ENST00000553529 CCDC24Q8N4L8 307 aa24.2■■□□□ 1.46
SHMT2-206ENST00000553529 STARD3NLO95772 234 aa24.19■■□□□ 1.46
SHMT2-206ENST00000553529 NRXN2Q9P2S2 1712 aa24.18■■□□□ 1.46
SHMT2-206ENST00000553529 BCORQ6W2J9 1755 aa24.17■■□□□ 1.46
SHMT2-206ENST00000553529 TBC1D9BQ66K14 1250 aa24.17■■□□□ 1.46
SHMT2-206ENST00000553529 BCS1LQ9Y276 419 aa24.17■■□□□ 1.46
SHMT2-206ENST00000553529 NBPF26B4DH59 902 aa24.16■■□□□ 1.46
SHMT2-206ENST00000553529 GRIN3BO60391 1043 aa24.16■■□□□ 1.46
SHMT2-206ENST00000553529 TAF7Q15545 349 aaPredicted RBP24.16■■□□□ 1.46
SHMT2-206ENST00000553529 NBPF10Q6P3W6 841 aaKnown RBP24.16■■□□□ 1.46
SHMT2-206ENST00000553529 NBPF15Q8N660 670 aa24.16■■□□□ 1.46
SHMT2-206ENST00000553529 LAMB4A4D0S4 1761 aa24.16■■□□□ 1.46
SHMT2-206ENST00000553529 MAPK8IP3Q9UPT6 1336 aa24.15■■□□□ 1.46
SHMT2-206ENST00000553529 HTATSF1O43719 755 aaKnown RBP24.15■■□□□ 1.46
SHMT2-206ENST00000553529 TGFB2P61812 414 aa24.14■■□□□ 1.45
SHMT2-206ENST00000553529 PRKRIP1Q9H875 184 aaPredicted RBP24.14■■□□□ 1.45
SHMT2-206ENST00000553529 ANKRD31Q8N7Z5 1873 aa24.13■■□□□ 1.45
SHMT2-206ENST00000553529 CAMTA2O94983 1202 aa24.13■■□□□ 1.45
SHMT2-206ENST00000553529 SERPINB2P05120 415 aa24.13■■□□□ 1.45
SHMT2-206ENST00000553529 SNRPA1P09661 255 aaKnown RBP24.12■■□□□ 1.45
SHMT2-206ENST00000553529 IL6STP40189 918 aaPredicted RBP24.12■■□□□ 1.45
SHMT2-206ENST00000553529 NEUROD2Q15784 382 aa24.12■■□□□ 1.45
SHMT2-206ENST00000553529 CCDC184Q52MB2 194 aa24.12■■□□□ 1.45
SHMT2-206ENST00000553529 ATP10DQ9P241 1426 aa24.11■■□□□ 1.45
SHMT2-206ENST00000553529 SENP3-EIF4A1A0A087X0R7 540 aa24.11■■□□□ 1.45
SHMT2-206ENST00000553529 NEFMP07197 916 aa24.11■■□□□ 1.45
SHMT2-206ENST00000553529 RIPK4P57078 832 aa24.11■■□□□ 1.45
SHMT2-206ENST00000553529 TEX13AQ9BXU3 409 aaPredicted RBP24.11■■□□□ 1.45
SHMT2-206ENST00000553529 COL11A2P13942 1736 aaPredicted RBP24.1■■□□□ 1.45
SHMT2-206ENST00000553529 TMPOP42166 694 aaKnown RBP24.1■■□□□ 1.45
SHMT2-206ENST00000553529 ZNF526Q8TF50 670 aaPredicted RBP24.1■■□□□ 1.45
SHMT2-206ENST00000553529 ADAMTS8Q9UP79 889 aa24.1■■□□□ 1.45
SHMT2-206ENST00000553529 ADCY9O60503 1353 aa24.09■■□□□ 1.45
SHMT2-206ENST00000553529 EIF4A1P60842 406 aaKnown RBP24.09■■□□□ 1.45
SHMT2-206ENST00000553529 DZIP3Q86Y13 1208 aaKnown RBP24.09■■□□□ 1.45
SHMT2-206ENST00000553529 NGEFQ8N5V2 710 aa24.08■■□□□ 1.45
SHMT2-206ENST00000553529 ARFGEF1Q9Y6D6 1849 aa24.07■■□□□ 1.44
SHMT2-206ENST00000553529 DLEC1Q9Y238 1755 aa24.07■■□□□ 1.44
SHMT2-206ENST00000553529 A0A087WZG4 1122 aa24.06■■□□□ 1.44
SHMT2-206ENST00000553529 GIGYF1O75420 1035 aaPredicted RBP24.06■■□□□ 1.44
SHMT2-206ENST00000553529 KRT24Q2M2I5 525 aa24.06■■□□□ 1.44
SHMT2-206ENST00000553529 ARHGAP27Q6ZUM4 889 aa24.06■■□□□ 1.44
SHMT2-206ENST00000553529 HLFQ16534 295 aa24.05■■□□□ 1.44
SHMT2-206ENST00000553529 PRR5LQ6MZQ0 368 aa24.04■■□□□ 1.44
SHMT2-206ENST00000553529 TRIM35Q9UPQ4 493 aa24.04■■□□□ 1.44
SHMT2-206ENST00000553529 WDR43Q15061 677 aaKnown RBP eCLIP24.03■■□□□ 1.44
SHMT2-206ENST00000553529 PIM2Q9P1W9 311 aa24.03■■□□□ 1.44
SHMT2-206ENST00000553529 TSPYL4Q9UJ04 414 aa24.03■■□□□ 1.44
SHMT2-206ENST00000553529 ANXA1P04083 346 aa24.02■■□□□ 1.44
SHMT2-206ENST00000553529 C2CD5Q86YS7 1000 aa24.02■■□□□ 1.44
SHMT2-206ENST00000553529 FAM177BA6PVY3 158 aa24.01■■□□□ 1.43
SHMT2-206ENST00000553529 MYL6BP14649 208 aa24.01■■□□□ 1.43
SHMT2-206ENST00000553529 DALRD3Q5D0E6 543 aaKnown RBP24.01■■□□□ 1.43
SHMT2-206ENST00000553529 TTLL7Q6ZT98 887 aa24.01■■□□□ 1.43
SHMT2-206ENST00000553529 PNNQ9H307 717 aaKnown RBP24.01■■□□□ 1.43
SHMT2-206ENST00000553529 CACNA1SQ13698 1873 aa24■■□□□ 1.43
SHMT2-206ENST00000553529 RASSF7Q02833 373 aa24■■□□□ 1.43
SHMT2-206ENST00000553529 PROSER3Q2NL68 480 aa24■■□□□ 1.43
SHMT2-206ENST00000553529 NECTIN2Q92692 538 aa24■■□□□ 1.43
SHMT2-206ENST00000553529 RUNDC1Q96C34 613 aa24■■□□□ 1.43
SHMT2-206ENST00000553529 PRELPP51888 382 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms