RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 EYA1Q99502 592 aa21.15■□□□□ 0.98
SYNE3-202ENST00000553340 NUTM1Q86Y26 1132 aa21.15■□□□□ 0.98
SYNE3-202ENST00000553340 RPAP1Q9BWH6 1393 aaPredicted RBP21.15■□□□□ 0.98
SYNE3-202ENST00000553340 TTC21AQ8NDW8 1320 aa21.14■□□□□ 0.98
SYNE3-202ENST00000553340 RAD50Q92878 1312 aa21.14■□□□□ 0.98
SYNE3-202ENST00000553340 PXDNLA1KZ92 1463 aa21.14■□□□□ 0.98
SYNE3-202ENST00000553340 CACNA1FO60840 1977 aa21.14■□□□□ 0.98
SYNE3-202ENST00000553340 AMPHP49418 695 aa21.14■□□□□ 0.97
SYNE3-202ENST00000553340 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.14■□□□□ 0.97
SYNE3-202ENST00000553340 TCHHQ07283 1943 aa21.14■□□□□ 0.97
SYNE3-202ENST00000553340 GNAT3A8MTJ3 354 aa21.13■□□□□ 0.97
SYNE3-202ENST00000553340 SGSM2O43147 1006 aa21.13■□□□□ 0.97
SYNE3-202ENST00000553340 ZSCAN22P10073 491 aaPredicted RBP21.13■□□□□ 0.97
SYNE3-202ENST00000553340 ESF1Q9H501 851 aaKnown RBP21.13■□□□□ 0.97
SYNE3-202ENST00000553340 FAM69CQ0P6D2 419 aa21.13■□□□□ 0.97
SYNE3-202ENST00000553340 CNPY2Q9Y2B0 182 aa21.13■□□□□ 0.97
SYNE3-202ENST00000553340 SURF6O75683 361 aaKnown RBP21.12■□□□□ 0.97
SYNE3-202ENST00000553340 DNTTIP2Q5QJE6 756 aaKnown RBP21.12■□□□□ 0.97
SYNE3-202ENST00000553340 USP25Q9UHP3 1055 aa21.12■□□□□ 0.97
SYNE3-202ENST00000553340 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.12■□□□□ 0.97
SYNE3-202ENST00000553340 CEP170BQ9Y4F5 1589 aaPredicted RBP21.12■□□□□ 0.97
SYNE3-202ENST00000553340 UBE2HP62256 183 aa21.12■□□□□ 0.97
SYNE3-202ENST00000553340 SNX14Q9Y5W7 946 aa21.12■□□□□ 0.97
SYNE3-202ENST00000553340 N4BP2Q86UW6 1770 aaPredicted RBP21.12■□□□□ 0.97
SYNE3-202ENST00000553340 TTC14Q96N46 770 aa21.11■□□□□ 0.97
SYNE3-202ENST00000553340 LIMCH1Q9UPQ0 1083 aa21.11■□□□□ 0.97
SYNE3-202ENST00000553340 ATP6V1DQ9Y5K8 247 aa21.11■□□□□ 0.97
SYNE3-202ENST00000553340 STX6O43752 255 aa21.11■□□□□ 0.97
SYNE3-202ENST00000553340 MAP4K4O95819 1239 aaPredicted RBP21.11■□□□□ 0.97
SYNE3-202ENST00000553340 PI4K2BQ8TCG2 481 aa21.11■□□□□ 0.97
SYNE3-202ENST00000553340 LRRC37A3O60309 1634 aa21.11■□□□□ 0.97
SYNE3-202ENST00000553340 AK2P54819 239 aa21.1■□□□□ 0.97
SYNE3-202ENST00000553340 PPP1R42Q7Z4L9 355 aa21.1■□□□□ 0.97
SYNE3-202ENST00000553340 CNTROBQ8N137 903 aa21.1■□□□□ 0.97
SYNE3-202ENST00000553340 RHPN1Q8TCX5 695 aa21.1■□□□□ 0.97
SYNE3-202ENST00000553340 PIBF1Q8WXW3 757 aa21.1■□□□□ 0.97
SYNE3-202ENST00000553340 TMEM2Q9UHN6 1383 aa21.1■□□□□ 0.97
SYNE3-202ENST00000553340 ADCY5O95622 1261 aa21.09■□□□□ 0.97
SYNE3-202ENST00000553340 SYT1P21579 422 aa21.09■□□□□ 0.97
SYNE3-202ENST00000553340 LSG1Q9H089 658 aaKnown RBP21.09■□□□□ 0.97
SYNE3-202ENST00000553340 BABAM1Q9NWV8 329 aa21.09■□□□□ 0.97
SYNE3-202ENST00000553340 HCLS1P14317 486 aaPredicted RBP21.09■□□□□ 0.97
SYNE3-202ENST00000553340 POLA2Q14181 598 aa21.09■□□□□ 0.97
SYNE3-202ENST00000553340 KIF1BPQ96EK5 621 aa21.09■□□□□ 0.97
SYNE3-202ENST00000553340 SMC3Q9UQE7 1217 aa21.09■□□□□ 0.97
SYNE3-202ENST00000553340 ADAMTS13Q76LX8 1427 aa21.09■□□□□ 0.97
SYNE3-202ENST00000553340 F13A1P00488 732 aa21.08■□□□□ 0.97
SYNE3-202ENST00000553340 TAF7Q15545 349 aaPredicted RBP21.08■□□□□ 0.97
SYNE3-202ENST00000553340 KLHL34Q8N239 644 aa21.08■□□□□ 0.97
SYNE3-202ENST00000553340 MYRIPQ8NFW9 859 aa21.08■□□□□ 0.97
SYNE3-202ENST00000553340 PRIMPOLQ96LW4 560 aa21.08■□□□□ 0.97
SYNE3-202ENST00000553340 NOLC1Q14978 699 aaKnown RBP eCLIP21.08■□□□□ 0.96
SYNE3-202ENST00000553340 RUFY3Q7L099 469 aa21.08■□□□□ 0.96
SYNE3-202ENST00000553340 HDGFL1Q5TGJ6 251 aa21.07■□□□□ 0.96
SYNE3-202ENST00000553340 RASEFQ8IZ41 740 aa21.07■□□□□ 0.96
SYNE3-202ENST00000553340 MPNDQ8N594 471 aa21.07■□□□□ 0.96
SYNE3-202ENST00000553340 ZNF830Q96NB3 372 aaPredicted RBP21.07■□□□□ 0.96
SYNE3-202ENST00000553340 HMGN5P82970 282 aaKnown RBP21.07■□□□□ 0.96
SYNE3-202ENST00000553340 IL17REQ8NFR9 667 aa21.07■□□□□ 0.96
SYNE3-202ENST00000553340 SRGAP3O43295 1099 aa21.06■□□□□ 0.96
SYNE3-202ENST00000553340 MAP3K5Q99683 1374 aa21.06■□□□□ 0.96
SYNE3-202ENST00000553340 FIBPO43427 364 aa21.06■□□□□ 0.96
SYNE3-202ENST00000553340 TPRNQ4KMQ1 711 aa21.06■□□□□ 0.96
SYNE3-202ENST00000553340 TNRQ92752 1358 aa21.06■□□□□ 0.96
SYNE3-202ENST00000553340 KDM4AO75164 1064 aa21.05■□□□□ 0.96
SYNE3-202ENST00000553340 PHAXQ9H814 394 aaKnown RBP21.05■□□□□ 0.96
SYNE3-202ENST00000553340 CWC27Q6UX04 472 aaKnown RBP21.05■□□□□ 0.96
SYNE3-202ENST00000553340 LARP6Q9BRS8 491 aaKnown RBP21.05■□□□□ 0.96
SYNE3-202ENST00000553340 TTC12Q9H892 705 aaPredicted RBP21.05■□□□□ 0.96
SYNE3-202ENST00000553340 TSPOAP1O95153 1857 aa21.05■□□□□ 0.96
SYNE3-202ENST00000553340 PTPRUQ92729 1446 aa21.04■□□□□ 0.96
SYNE3-202ENST00000553340 NGDNQ8NEJ9 315 aaKnown RBP21.04■□□□□ 0.96
SYNE3-202ENST00000553340 CASTP20810 708 aaKnown RBP21.04■□□□□ 0.96
SYNE3-202ENST00000553340 HSP90AB4PQ58FF6 505 aa21.04■□□□□ 0.96
SYNE3-202ENST00000553340 ZBTB7CA1YPR0 619 aa21.03■□□□□ 0.96
SYNE3-202ENST00000553340 SPG7Q9UQ90 795 aa21.03■□□□□ 0.96
SYNE3-202ENST00000553340 RUFY2Q8WXA3 655 aa21.02■□□□□ 0.96
SYNE3-202ENST00000553340 HYPKQ9NX55 129 aa21.02■□□□□ 0.96
SYNE3-202ENST00000553340 FUCA2Q9BTY2 467 aa21.02■□□□□ 0.96
SYNE3-202ENST00000553340 DIAPH3Q9NSV4 1193 aa21.02■□□□□ 0.96
SYNE3-202ENST00000553340 TTC41PQ6P2S7 1318 aa21.01■□□□□ 0.95
SYNE3-202ENST00000553340 UBR1Q8IWV7 1749 aa21.01■□□□□ 0.95
SYNE3-202ENST00000553340 DIP2BQ9P265 1576 aa21.01■□□□□ 0.95
SYNE3-202ENST00000553340 GLRX3O76003 335 aaKnown RBP21.01■□□□□ 0.95
SYNE3-202ENST00000553340 SPTLC3Q9NUV7 552 aa21.01■□□□□ 0.95
SYNE3-202ENST00000553340 NBPF7P0C2Y1 421 aaPredicted RBP21.01■□□□□ 0.95
SYNE3-202ENST00000553340 GJB2P29033 226 aa21.01■□□□□ 0.95
SYNE3-202ENST00000553340 CYB5RLQ6IPT4 315 aa21.01■□□□□ 0.95
SYNE3-202ENST00000553340 GIMAP6Q6P9H5 292 aa21.01■□□□□ 0.95
SYNE3-202ENST00000553340 ZSCAN31Q96LW9 406 aaPredicted RBP21.01■□□□□ 0.95
SYNE3-202ENST00000553340 USP42Q9H9J4 1324 aaKnown RBP21■□□□□ 0.95
SYNE3-202ENST00000553340 VPS53Q5VIR6 699 aa21■□□□□ 0.95
SYNE3-202ENST00000553340 CCDC83Q8IWF9 413 aa21■□□□□ 0.95
SYNE3-202ENST00000553340 PLEKHG1Q9ULL1 1385 aa21■□□□□ 0.95
SYNE3-202ENST00000553340 CPA1P15085 419 aa21■□□□□ 0.95
SYNE3-202ENST00000553340 GTF2F1P35269 517 aaKnown RBP eCLIP21■□□□□ 0.95
SYNE3-202ENST00000553340 DNM1Q05193 864 aaKnown RBP21■□□□□ 0.95
SYNE3-202ENST00000553340 SH2B1Q9NRF2 756 aaPredicted RBP21■□□□□ 0.95
SYNE3-202ENST00000553340 PDRG1Q9NUG6 133 aa21■□□□□ 0.95
SYNE3-202ENST00000553340 MTMR6Q9Y217 621 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms