RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 MMP10P09238 476 aa20.16■□□□□ 0.82
SHMT2-204ENST00000553324 CANXP27824 592 aaKnown RBP20.16■□□□□ 0.82
SHMT2-204ENST00000553324 CCDC146Q8IYE0 955 aa20.16■□□□□ 0.82
SHMT2-204ENST00000553324 BABAM1Q9NWV8 329 aa20.16■□□□□ 0.82
SHMT2-204ENST00000553324 USP42Q9H9J4 1324 aaKnown RBP20.16■□□□□ 0.82
SHMT2-204ENST00000553324 CICQ96RK0 1608 aaPredicted RBP20.16■□□□□ 0.82
SHMT2-204ENST00000553324 COL5A3P25940 1745 aaPredicted RBP20.16■□□□□ 0.82
SHMT2-204ENST00000553324 COL24A1Q17RW2 1714 aa20.16■□□□□ 0.82
SHMT2-204ENST00000553324 IL6STP40189 918 aaPredicted RBP20.14■□□□□ 0.81
SHMT2-204ENST00000553324 EIF5P55010 431 aaKnown RBP20.14■□□□□ 0.81
SHMT2-204ENST00000553324 MIS18AQ9NYP9 233 aa20.14■□□□□ 0.81
SHMT2-204ENST00000553324 NARFQ9UHQ1 456 aa20.14■□□□□ 0.81
SHMT2-204ENST00000553324 PARP3Q9Y6F1 533 aa20.14■□□□□ 0.81
SHMT2-204ENST00000553324 USP16Q9Y5T5 823 aa20.13■□□□□ 0.81
SHMT2-204ENST00000553324 VIRMAQ69YN4 1812 aaKnown RBP20.13■□□□□ 0.81
SHMT2-204ENST00000553324 MYH14Q7Z406 1995 aaKnown RBP20.12■□□□□ 0.81
SHMT2-204ENST00000553324 NEUROD2Q15784 382 aa20.12■□□□□ 0.81
SHMT2-204ENST00000553324 THUMPD2Q9BTF0 503 aaKnown RBP20.12■□□□□ 0.81
SHMT2-204ENST00000553324 SRP68Q9UHB9 627 aaKnown RBP20.12■□□□□ 0.81
SHMT2-204ENST00000553324 TJP1Q07157 1748 aa20.12■□□□□ 0.81
SHMT2-204ENST00000553324 SIPA1L3O60292 1781 aaPredicted RBP20.11■□□□□ 0.81
SHMT2-204ENST00000553324 COL15A1P39059 1388 aa20.11■□□□□ 0.81
SHMT2-204ENST00000553324 A1BGP04217 495 aa20.11■□□□□ 0.81
SHMT2-204ENST00000553324 USPL1Q5W0Q7 1092 aa20.11■□□□□ 0.81
SHMT2-204ENST00000553324 UBR2Q8IWV8 1755 aa20.11■□□□□ 0.81
SHMT2-204ENST00000553324 EIF4A1P60842 406 aaKnown RBP20.1■□□□□ 0.81
SHMT2-204ENST00000553324 FKBP8Q14318 412 aa20.1■□□□□ 0.81
SHMT2-204ENST00000553324 GPR162Q16538 588 aa20.1■□□□□ 0.81
SHMT2-204ENST00000553324 TSPYL4Q9UJ04 414 aa20.1■□□□□ 0.81
SHMT2-204ENST00000553324 RRP7AQ9Y3A4 280 aaKnown RBP20.1■□□□□ 0.81
SHMT2-204ENST00000553324 NLGN2Q8NFZ4 835 aa20.09■□□□□ 0.81
SHMT2-204ENST00000553324 GIGYF1O75420 1035 aaPredicted RBP20.08■□□□□ 0.81
SHMT2-204ENST00000553324 TM4SF1P30408 202 aa20.08■□□□□ 0.81
SHMT2-204ENST00000553324 TGFB2P61812 414 aa20.08■□□□□ 0.81
SHMT2-204ENST00000553324 ZNF330Q9Y3S2 320 aaPredicted RBP20.08■□□□□ 0.81
SHMT2-204ENST00000553324 MRS2Q9HD23 443 aa20.07■□□□□ 0.8
SHMT2-204ENST00000553324 TRIM35Q9UPQ4 493 aa20.07■□□□□ 0.8
SHMT2-204ENST00000553324 UTRNP46939 3433 aa20.07■□□□□ 0.8
SHMT2-204ENST00000553324 PRAMEF22A3QJZ6 481 aa20.06■□□□□ 0.8
SHMT2-204ENST00000553324 APAF1O14727 1248 aa20.06■□□□□ 0.8
SHMT2-204ENST00000553324 GRIN3BO60391 1043 aa20.06■□□□□ 0.8
SHMT2-204ENST00000553324 CALD1Q05682 793 aaKnown RBP20.06■□□□□ 0.8
SHMT2-204ENST00000553324 TBC1D2BQ9UPU7 963 aa20.05■□□□□ 0.8
SHMT2-204ENST00000553324 CHL1O00533 1208 aa20.04■□□□□ 0.8
SHMT2-204ENST00000553324 CCDC184Q52MB2 194 aa20.04■□□□□ 0.8
SHMT2-204ENST00000553324 DZIP3Q86Y13 1208 aaKnown RBP20.04■□□□□ 0.8
SHMT2-204ENST00000553324 PELP1Q8IZL8 1130 aaKnown RBP20.04■□□□□ 0.8
SHMT2-204ENST00000553324 POLRMTO00411 1230 aaKnown RBP20.03■□□□□ 0.8
SHMT2-204ENST00000553324 RGL2O15211 777 aa20.03■□□□□ 0.8
SHMT2-204ENST00000553324 NFIXQ14938 502 aa20.03■□□□□ 0.8
SHMT2-204ENST00000553324 CLEC4GQ6UXB4 293 aa20.03■□□□□ 0.8
SHMT2-204ENST00000553324 BCL2L12Q9HB09 334 aa20.03■□□□□ 0.8
SHMT2-204ENST00000553324 DLG5Q8TDM6 1919 aa20.03■□□□□ 0.8
SHMT2-204ENST00000553324 DDR1Q08345 913 aa20.02■□□□□ 0.8
SHMT2-204ENST00000553324 CFAP44Q96MT7 982 aa20.02■□□□□ 0.8
SHMT2-204ENST00000553324 LAS1LQ9Y4W2 734 aaKnown RBP20.02■□□□□ 0.8
SHMT2-204ENST00000553324 GOLGB1Q14789 3259 aaKnown RBP20.02■□□□□ 0.8
SHMT2-204ENST00000553324 NBPF26B4DH59 902 aa20.01■□□□□ 0.79
SHMT2-204ENST00000553324 NBPF10Q6P3W6 841 aaKnown RBP20.01■□□□□ 0.79
SHMT2-204ENST00000553324 NBPF15Q8N660 670 aa20.01■□□□□ 0.79
SHMT2-204ENST00000553324 ZNF652Q9Y2D9 606 aa20.01■□□□□ 0.79
SHMT2-204ENST00000553324 ERBB4Q15303 1308 aa20.01■□□□□ 0.79
SHMT2-204ENST00000553324 CAMTA2O94983 1202 aa20■□□□□ 0.79
SHMT2-204ENST00000553324 SERPINB2P05120 415 aa20■□□□□ 0.79
SHMT2-204ENST00000553324 YY1P25490 414 aa20■□□□□ 0.79
SHMT2-204ENST00000553324 NCBP3Q53F19 620 aaKnown RBP20■□□□□ 0.79
SHMT2-204ENST00000553324 SETDB2Q96T68 719 aa20■□□□□ 0.79
SHMT2-204ENST00000553324 PIP4K2AP48426 406 aaPredicted RBP19.99■□□□□ 0.79
SHMT2-204ENST00000553324 C4AP0C0L4 1744 aa19.99■□□□□ 0.79
SHMT2-204ENST00000553324 TBC1D9BQ66K14 1250 aa19.98■□□□□ 0.79
SHMT2-204ENST00000553324 BICDL1Q6ZP65 573 aa19.98■□□□□ 0.79
SHMT2-204ENST00000553324 C10orf71Q711Q0 1435 aa19.98■□□□□ 0.79
SHMT2-204ENST00000553324 A0A0G2JLW4 131 aa19.97■□□□□ 0.79
SHMT2-204ENST00000553324 YBX3P16989 372 aaKnown RBP eCLIP19.97■□□□□ 0.799e-9■□□□□ 9.1
SHMT2-204ENST00000553324 GNAI1P63096 354 aa19.97■□□□□ 0.79
SHMT2-204ENST00000553324 CCDC27Q2M243 656 aa19.97■□□□□ 0.79
SHMT2-204ENST00000553324 IFT57Q9NWB7 429 aa19.97■□□□□ 0.79
SHMT2-204ENST00000553324 ERVV-1B6SEH8 477 aa19.96■□□□□ 0.79
SHMT2-204ENST00000553324 EIF2S2P20042 333 aaKnown RBP19.96■□□□□ 0.79
SHMT2-204ENST00000553324 HOXB7P09629 217 aa19.95■□□□□ 0.78
SHMT2-204ENST00000553324 ZNF853P0CG23 659 aa19.95■□□□□ 0.78
SHMT2-204ENST00000553324 DPEP1P16444 411 aa19.95■□□□□ 0.78
SHMT2-204ENST00000553324 KIF6Q6ZMV9 814 aa19.95■□□□□ 0.78
SHMT2-204ENST00000553324 PDZRN3Q9UPQ7 1066 aa19.95■□□□□ 0.78
SHMT2-204ENST00000553324 KDM3BQ7LBC6 1761 aa19.95■□□□□ 0.78
SHMT2-204ENST00000553324 CARMIL3Q8ND23 1372 aa19.95■□□□□ 0.78
SHMT2-204ENST00000553324 MYL6BP14649 208 aa19.94■□□□□ 0.78
SHMT2-204ENST00000553324 NGEFQ8N5V2 710 aa19.94■□□□□ 0.78
SHMT2-204ENST00000553324 CHMP4AQ9BY43 222 aa19.94■□□□□ 0.78
SHMT2-204ENST00000553324 PIM2Q9P1W9 311 aa19.94■□□□□ 0.78
SHMT2-204ENST00000553324 NPHP1O15259 732 aa19.93■□□□□ 0.78
SHMT2-204ENST00000553324 MBIPQ9NS73 344 aa19.93■□□□□ 0.78
SHMT2-204ENST00000553324 PXDNLA1KZ92 1463 aa19.92■□□□□ 0.78
SHMT2-204ENST00000553324 KCNA3P22001 575 aa19.92■□□□□ 0.78
SHMT2-204ENST00000553324 BRIP1Q9BX63 1249 aa19.92■□□□□ 0.78
SHMT2-204ENST00000553324 PDE6BP35913 854 aa19.91■□□□□ 0.78
SHMT2-204ENST00000553324 TPTE2Q6XPS3 522 aa19.91■□□□□ 0.78
SHMT2-204ENST00000553324 WWC1Q8IX03 1113 aa19.91■□□□□ 0.78
SHMT2-204ENST00000553324 CNBD1Q8NA66 436 aa19.91■□□□□ 0.78
SHMT2-204ENST00000553324 NIP7Q9Y221 180 aaKnown RBP eCLIP19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms