RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	FERMT3	Q86UX7	667 aa		13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	CTCFL	Q8NI51	663 aa	Predicted RBP	13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	PIK3R4	Q99570	1358 aa		13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	SLC5A1	P13866	664 aa		13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	RAB34	Q9BZG1	259 aa		13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	TMOD2	Q9NZR1	351 aa		13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	ABCF2	Q9UG63	623 aa		13.44	□□□□□ -0.26
SYNE2-208	ENST00000553289	MCM3	P25205	808 aa		13.43	□□□□□ -0.26
SYNE2-208	ENST00000553289	THOC2	Q8NI27	1593 aa	Known RBP	13.43	□□□□□ -0.26
SYNE2-208	ENST00000553289	MCM5	P33992	734 aa		13.43	□□□□□ -0.26
SYNE2-208	ENST00000553289	IQCA1	Q86XH1	822 aa		13.43	□□□□□ -0.26
SYNE2-208	ENST00000553289	HMG20B	Q9P0W2	317 aa		13.43	□□□□□ -0.26
SYNE2-208	ENST00000553289	ZNF213	O14771	459 aa		13.43	□□□□□ -0.26
SYNE2-208	ENST00000553289	FKBP15	Q5T1M5	1219 aa		13.43	□□□□□ -0.26
SYNE2-208	ENST00000553289	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.43	□□□□□ -0.26
SYNE2-208	ENST00000553289	NOS1	P29475	1434 aa		13.43	□□□□□ -0.26
SYNE2-208	ENST00000553289	SKIDA1	Q1XH10	827 aa		13.43	□□□□□ -0.26
SYNE2-208	ENST00000553289	KIF18A	Q8NI77	898 aa		13.43	□□□□□ -0.26
SYNE2-208	ENST00000553289	TNPO1	Q92973	898 aa	Known RBP	13.43	□□□□□ -0.26
SYNE2-208	ENST00000553289	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.43	□□□□□ -0.26
SYNE2-208	ENST00000553289	KIF20A	O95235	890 aa		13.42	□□□□□ -0.26
SYNE2-208	ENST00000553289	SPA17	Q15506	151 aa		13.42	□□□□□ -0.26
SYNE2-208	ENST00000553289	TSG101	Q99816	390 aa		13.42	□□□□□ -0.26
SYNE2-208	ENST00000553289	HDAC1	Q13547	482 aa	Predicted RBP	13.42	□□□□□ -0.26
SYNE2-208	ENST00000553289	TTF1	Q15361	905 aa	Predicted RBP	13.42	□□□□□ -0.26
SYNE2-208	ENST00000553289	CAMK4	Q16566	473 aa		13.42	□□□□□ -0.26
SYNE2-208	ENST00000553289	SF3B2	Q13435	895 aa	Known RBP	13.42	□□□□□ -0.26
SYNE2-208	ENST00000553289	PYM1	Q9BRP8	204 aa	Known RBP	13.42	□□□□□ -0.26
SYNE2-208	ENST00000553289	SLC12A7	Q9Y666	1083 aa		13.42	□□□□□ -0.26
SYNE2-208	ENST00000553289	NUP160	Q12769	1436 aa		13.42	□□□□□ -0.26
SYNE2-208	ENST00000553289	GSDMD	P57764	484 aa		13.42	□□□□□ -0.26
SYNE2-208	ENST00000553289	TMCO3	Q6UWJ1	677 aa		13.42	□□□□□ -0.26
SYNE2-208	ENST00000553289	MPND	Q8N594	471 aa		13.42	□□□□□ -0.26
SYNE2-208	ENST00000553289	USP8	P40818	1118 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	USP5	P45974	858 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	TNIP1	Q15025	636 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	MAP9	Q49MG5	647 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	ANKRD18B	A2A2Z9	1011 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	KIF5C	O60282	957 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	POTEJ	P0CG39	1038 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	TOP1	P11387	765 aa	Known RBP	13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289		F6X3S4	739 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	CETN2	P41208	172 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	UVSSA	Q2YD98	709 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	TBC1D9	Q6ZT07	1266 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	SLF2	Q8IX21	1173 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	MKNK2	Q9HBH9	465 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	SSFA2	P28290	1259 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	XPC	Q01831	940 aa	Predicted RBP	13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	SSRP1	Q08945	709 aa	Known RBP	13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	TTC22	Q5TAA0	569 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	TBC1D32	Q96NH3	1257 aa		13.41	□□□□□ -0.26
SYNE2-208	ENST00000553289	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.4	□□□□□ -0.26
SYNE2-208	ENST00000553289	NUTM2E	B1AL46	878 aa	Predicted RBP	13.4	□□□□□ -0.26
SYNE2-208	ENST00000553289	POLR3D	P05423	398 aa	Predicted RBP	13.4	□□□□□ -0.26
SYNE2-208	ENST00000553289	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.4	□□□□□ -0.26
SYNE2-208	ENST00000553289	IDI1	Q13907	227 aa		13.4	□□□□□ -0.26
SYNE2-208	ENST00000553289	AMOTL2	Q9Y2J4	779 aa		13.4	□□□□□ -0.26
SYNE2-208	ENST00000553289	VPS36	Q86VN1	386 aa		13.4	□□□□□ -0.26
SYNE2-208	ENST00000553289	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.4	□□□□□ -0.26
SYNE2-208	ENST00000553289	SEPT11	Q9NVA2	429 aa	Known RBP	13.4	□□□□□ -0.26
SYNE2-208	ENST00000553289	CALR	P27797	417 aa	Known RBP	13.4	□□□□□ -0.27
SYNE2-208	ENST00000553289	TMEM266	Q2M3C6	531 aa		13.4	□□□□□ -0.27
SYNE2-208	ENST00000553289	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.4	□□□□□ -0.27
SYNE2-208	ENST00000553289	CLIP2	Q9UDT6	1046 aa		13.4	□□□□□ -0.27
SYNE2-208	ENST00000553289	DENND4B	O75064	1496 aa	Predicted RBP	13.39	□□□□□ -0.27
SYNE2-208	ENST00000553289	DISP3	Q9P2K9	1392 aa		13.39	□□□□□ -0.27
SYNE2-208	ENST00000553289	PTCD1	O75127	700 aa	Known RBP	13.39	□□□□□ -0.27
SYNE2-208	ENST00000553289		A0A087WZG4	1122 aa		13.39	□□□□□ -0.27
SYNE2-208	ENST00000553289	MINDY4B	A8MYZ0	360 aa		13.39	□□□□□ -0.27
SYNE2-208	ENST00000553289	STX6	O43752	255 aa		13.39	□□□□□ -0.27
SYNE2-208	ENST00000553289	GOLGA8A	A7E2F4	631 aa		13.39	□□□□□ -0.27
SYNE2-208	ENST00000553289	GOLGA8B	A8MQT2	603 aa		13.39	□□□□□ -0.27
SYNE2-208	ENST00000553289	CCDC102A	Q96A19	550 aa		13.39	□□□□□ -0.27
SYNE2-208	ENST00000553289	CRACR2A	Q9BSW2	395 aa		13.39	□□□□□ -0.27
SYNE2-208	ENST00000553289	ZPR1	O75312	459 aa		13.39	□□□□□ -0.27
SYNE2-208	ENST00000553289	STX1A	Q16623	288 aa		13.39	□□□□□ -0.27
SYNE2-208	ENST00000553289	DZIP1	Q86YF9	867 aa	Known RBP	13.39	□□□□□ -0.27
SYNE2-208	ENST00000553289	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.39	□□□□□ -0.27
SYNE2-208	ENST00000553289	MBIP	Q9NS73	344 aa		13.39	□□□□□ -0.27
SYNE2-208	ENST00000553289	BIVM-ERCC5	R4GMW8	1640 aa		13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	GOLGA6L9	A6NEM1	432 aa		13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	EZR	P15311	586 aa	Known RBP	13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	TAF3	Q5VWG9	929 aa		13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	ASXL1	Q8IXJ9	1541 aa		13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	ENOX2	Q16206	610 aa	Known RBP	13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	KANK3	Q6NY19	840 aa		13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	CATIP	Q7Z7H3	387 aa		13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	CNNM3	Q8NE01	707 aa		13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	DNAI2	Q9GZS0	605 aa		13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	TRMT112	Q9UI30	125 aa	Known RBP	13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	FANCA	O15360	1455 aa		13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	MPHOSPH10	O00566	681 aa	Known RBP	13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	CASQ1	P31415	396 aa		13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	KLHL40	Q2TBA0	621 aa		13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	MPRIP	Q6WCQ1	1025 aa		13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	KRI1	Q8N9T8	703 aa	Known RBP	13.38	□□□□□ -0.27
SYNE2-208	ENST00000553289	DNAJC5B	Q9UF47	199 aa		13.38	□□□□□ -0.27

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