RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 PNPLA7Q6ZV29 1317 aa9.71□□□□□ -0.85
LIMA1-216ENST00000552909 DLG5Q8TDM6 1919 aa9.71□□□□□ -0.85
LIMA1-216ENST00000552909 CASZ1Q86V15 1759 aa9.71□□□□□ -0.86
LIMA1-216ENST00000552909 MRC1P22897 1456 aa9.71□□□□□ -0.86
LIMA1-216ENST00000552909 ATF5Q9Y2D1 282 aaPredicted RBP9.71□□□□□ -0.86
LIMA1-216ENST00000552909 KCNQ3O43525 872 aa9.7□□□□□ -0.86
LIMA1-216ENST00000552909 TEFQ10587 303 aa9.7□□□□□ -0.86
LIMA1-216ENST00000552909 THUMPD2Q9BTF0 503 aaKnown RBP9.7□□□□□ -0.86
LIMA1-216ENST00000552909 C4BP0C0L5 1744 aa9.7□□□□□ -0.86
LIMA1-216ENST00000552909 NFE2L2Q16236 605 aa9.7□□□□□ -0.86
LIMA1-216ENST00000552909 FAM161AQ3B820 660 aa9.7□□□□□ -0.86
LIMA1-216ENST00000552909 COL23A1Q86Y22 540 aaPredicted RBP9.7□□□□□ -0.86
LIMA1-216ENST00000552909 RTF1Q92541 710 aaKnown RBP9.7□□□□□ -0.86
LIMA1-216ENST00000552909 PNNQ9H307 717 aaKnown RBP9.7□□□□□ -0.86
LIMA1-216ENST00000552909 RRP7AQ9Y3A4 280 aaKnown RBP9.7□□□□□ -0.86
LIMA1-216ENST00000552909 MYH14Q7Z406 1995 aaKnown RBP9.69□□□□□ -0.86
LIMA1-216ENST00000552909 MAPK8IP3Q9UPT6 1336 aa9.69□□□□□ -0.86
LIMA1-216ENST00000552909 SKAP1Q86WV1 359 aa9.69□□□□□ -0.86
LIMA1-216ENST00000552909 MIS18AQ9NYP9 233 aa9.69□□□□□ -0.86
LIMA1-216ENST00000552909 SIPA1L3O60292 1781 aaPredicted RBP9.69□□□□□ -0.86
LIMA1-216ENST00000552909 PHF14O94880 888 aa9.68□□□□□ -0.86
LIMA1-216ENST00000552909 NEUROD2Q15784 382 aa9.68□□□□□ -0.86
LIMA1-216ENST00000552909 ZNF790Q6PG37 636 aa9.68□□□□□ -0.86
LIMA1-216ENST00000552909 AK7Q96M32 723 aa9.68□□□□□ -0.86
LIMA1-216ENST00000552909 SPON1Q9HCB6 807 aa9.68□□□□□ -0.86
LIMA1-216ENST00000552909 PODXL2Q9NZ53 605 aa9.68□□□□□ -0.86
LIMA1-216ENST00000552909 KCPQ6ZWJ8 1503 aa9.68□□□□□ -0.86
LIMA1-216ENST00000552909 BTBD11A6QL63 1104 aa9.68□□□□□ -0.86
LIMA1-216ENST00000552909 GNPATO15228 680 aa9.68□□□□□ -0.86
LIMA1-216ENST00000552909 TMPOP42166 694 aaKnown RBP9.68□□□□□ -0.86
LIMA1-216ENST00000552909 PTGER2P43116 358 aa9.68□□□□□ -0.86
LIMA1-216ENST00000552909 RIPK4P57078 832 aa9.68□□□□□ -0.86
LIMA1-216ENST00000552909 DNAJC10Q8IXB1 793 aa9.68□□□□□ -0.86
LIMA1-216ENST00000552909 ZNF496Q96IT1 587 aaPredicted RBP9.68□□□□□ -0.86
LIMA1-216ENST00000552909 UBR3Q6ZT12 1888 aa9.67□□□□□ -0.86
LIMA1-216ENST00000552909 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.67□□□□□ -0.86
LIMA1-216ENST00000552909 HTATSF1O43719 755 aaKnown RBP9.67□□□□□ -0.86
LIMA1-216ENST00000552909 CRBNQ96SW2 442 aa9.67□□□□□ -0.86
LIMA1-216ENST00000552909 MTFR1LQ9H019 292 aa9.67□□□□□ -0.86
LIMA1-216ENST00000552909 APAF1O14727 1248 aa9.67□□□□□ -0.86
LIMA1-216ENST00000552909 COL5A3P25940 1745 aaPredicted RBP9.67□□□□□ -0.86
LIMA1-216ENST00000552909 CLCN1P35523 988 aa9.67□□□□□ -0.86
LIMA1-216ENST00000552909 CRKLP46109 303 aaKnown RBP9.67□□□□□ -0.86
LIMA1-216ENST00000552909 TTC5Q8N0Z6 440 aa9.67□□□□□ -0.86
LIMA1-216ENST00000552909 RUNDC1Q96C34 613 aa9.67□□□□□ -0.86
LIMA1-216ENST00000552909 SGIP1Q9BQI5 828 aa9.67□□□□□ -0.86
LIMA1-216ENST00000552909 LRP5O75197 1615 aa9.66□□□□□ -0.86
LIMA1-216ENST00000552909 TJP1Q07157 1748 aa9.66□□□□□ -0.86
LIMA1-216ENST00000552909 QSER1Q2KHR3 1735 aa9.66□□□□□ -0.86
LIMA1-216ENST00000552909 PRAMEF22A3QJZ6 481 aa9.66□□□□□ -0.86
LIMA1-216ENST00000552909 C8orf34Q49A92 452 aa9.66□□□□□ -0.86
LIMA1-216ENST00000552909 MSL1Q68DK7 614 aa9.66□□□□□ -0.86
LIMA1-216ENST00000552909 ZNF831Q5JPB2 1677 aa9.66□□□□□ -0.86
LIMA1-216ENST00000552909 UBR2Q8IWV8 1755 aa9.66□□□□□ -0.86
LIMA1-216ENST00000552909 CYP19A1P11511 503 aaPredicted RBP9.65□□□□□ -0.86
LIMA1-216ENST00000552909 TAF7Q15545 349 aaPredicted RBP9.65□□□□□ -0.86
LIMA1-216ENST00000552909 INTS5Q6P9B9 1019 aaKnown RBP9.65□□□□□ -0.86
LIMA1-216ENST00000552909 CENPQQ7L2Z9 268 aaPredicted RBP9.65□□□□□ -0.86
LIMA1-216ENST00000552909 TRIM35Q9UPQ4 493 aa9.65□□□□□ -0.86
LIMA1-216ENST00000552909 KDM2BQ8NHM5 1336 aa9.65□□□□□ -0.86
LIMA1-216ENST00000552909 RC3H1Q5TC82 1133 aaKnown RBP9.65□□□□□ -0.86
LIMA1-216ENST00000552909 CNTNAP4Q9C0A0 1308 aa9.65□□□□□ -0.87
LIMA1-216ENST00000552909 PLIN1O60240 522 aa9.64□□□□□ -0.87
LIMA1-216ENST00000552909 SSFA2P28290 1259 aa9.64□□□□□ -0.87
LIMA1-216ENST00000552909 SLC16A10Q8TF71 515 aa9.64□□□□□ -0.87
LIMA1-216ENST00000552909 ARHGEF1Q92888 912 aaKnown RBP9.64□□□□□ -0.87
LIMA1-216ENST00000552909 RTCBQ9Y3I0 505 aaKnown RBP9.64□□□□□ -0.87
LIMA1-216ENST00000552909 HEG1Q9ULI3 1381 aa9.64□□□□□ -0.87
LIMA1-216ENST00000552909 RPS6KA4O75676 772 aa9.64□□□□□ -0.87
LIMA1-216ENST00000552909 FMNL2Q96PY5 1086 aa9.64□□□□□ -0.87
LIMA1-216ENST00000552909 ZBTB1Q9Y2K1 713 aa9.64□□□□□ -0.87
LIMA1-216ENST00000552909 USP16Q9Y5T5 823 aa9.64□□□□□ -0.87
LIMA1-216ENST00000552909 HMGB2P26583 209 aaKnown RBP9.63□□□□□ -0.87
LIMA1-216ENST00000552909 TRAPPC3LQ5T215 181 aa9.63□□□□□ -0.87
LIMA1-216ENST00000552909 FLAD1Q8NFF5 587 aa9.63□□□□□ -0.87
LIMA1-216ENST00000552909 PPP1R1BQ9UD71 204 aaPredicted RBP9.63□□□□□ -0.87
LIMA1-216ENST00000552909 PIP4K2AP48426 406 aaPredicted RBP9.63□□□□□ -0.87
LIMA1-216ENST00000552909 CDCA7LQ96GN5 454 aa9.63□□□□□ -0.87
LIMA1-216ENST00000552909 CCDC87Q9NVE4 849 aa9.63□□□□□ -0.87
LIMA1-216ENST00000552909 CICQ96RK0 1608 aaPredicted RBP9.62□□□□□ -0.87
LIMA1-216ENST00000552909 A1BGP04217 495 aa9.62□□□□□ -0.87
LIMA1-216ENST00000552909 CANXP27824 592 aaKnown RBP9.62□□□□□ -0.87
LIMA1-216ENST00000552909 SRP68Q9UHB9 627 aaKnown RBP9.62□□□□□ -0.87
LIMA1-216ENST00000552909 GOLGA6L3A6NEY3 463 aa9.61□□□□□ -0.87
LIMA1-216ENST00000552909 ARXQ96QS3 562 aa9.61□□□□□ -0.87
LIMA1-216ENST00000552909 STARD3NLO95772 234 aa9.61□□□□□ -0.87
LIMA1-216ENST00000552909 RFC4P35249 363 aa9.61□□□□□ -0.87
LIMA1-216ENST00000552909 EIF4A1P60842 406 aaKnown RBP9.61□□□□□ -0.87
LIMA1-216ENST00000552909 BECN1Q14457 450 aa9.61□□□□□ -0.87
LIMA1-216ENST00000552909 FHDC1Q9C0D6 1143 aaPredicted RBP9.61□□□□□ -0.87
LIMA1-216ENST00000552909 SOS1Q07889 1333 aaPredicted RBP9.61□□□□□ -0.87
LIMA1-216ENST00000552909 COL24A1Q17RW2 1714 aa9.61□□□□□ -0.87
LIMA1-216ENST00000552909 SNRPA1P09661 255 aaKnown RBP9.6□□□□□ -0.87
LIMA1-216ENST00000552909 XRCC6P12956 609 aaKnown RBP eCLIP9.6□□□□□ -0.87
LIMA1-216ENST00000552909 GYS1P13807 737 aa9.6□□□□□ -0.87
LIMA1-216ENST00000552909 LMOD3Q0VAK6 560 aa9.6□□□□□ -0.87
LIMA1-216ENST00000552909 TSPYL4Q9UJ04 414 aa9.6□□□□□ -0.87
LIMA1-216ENST00000552909 KDM3BQ7LBC6 1761 aa9.6□□□□□ -0.87
LIMA1-216ENST00000552909 C4AP0C0L4 1744 aa9.6□□□□□ -0.87
LIMA1-216ENST00000552909 GIGYF1O75420 1035 aaPredicted RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms