RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 LRP10Q7Z4F1 713 aa12.32□□□□□ -0.44
LIMA1-211ENST00000552338 CCDC125Q86Z20 511 aa12.32□□□□□ -0.44
LIMA1-211ENST00000552338 ARHGAP45Q92619 1136 aa12.32□□□□□ -0.44
LIMA1-211ENST00000552338 SYTL4Q96C24 671 aaPredicted RBP12.32□□□□□ -0.44
LIMA1-211ENST00000552338 RNF39Q9H2S5 420 aa12.32□□□□□ -0.44
LIMA1-211ENST00000552338 SLC27A3Q5K4L6 730 aa12.31□□□□□ -0.44
LIMA1-211ENST00000552338 RC3H1Q5TC82 1133 aaKnown RBP12.31□□□□□ -0.44
LIMA1-211ENST00000552338 MRPL50Q8N5N7 158 aaKnown RBP12.31□□□□□ -0.44
LIMA1-211ENST00000552338 SSH1Q8WYL5 1049 aa12.31□□□□□ -0.44
LIMA1-211ENST00000552338 DDX21Q9NR30 783 aaKnown RBP eCLIP12.31□□□□□ -0.44
LIMA1-211ENST00000552338 ELL2O00472 640 aaPredicted RBP12.3□□□□□ -0.44
LIMA1-211ENST00000552338 TRIM37O94972 964 aa12.3□□□□□ -0.44
LIMA1-211ENST00000552338 CYP19A1P11511 503 aaPredicted RBP12.3□□□□□ -0.44
LIMA1-211ENST00000552338 HDGFL1Q5TGJ6 251 aa12.3□□□□□ -0.44
LIMA1-211ENST00000552338 DBF4Q9UBU7 674 aaPredicted RBP12.3□□□□□ -0.44
LIMA1-211ENST00000552338 PRAMEF22A3QJZ6 481 aa12.29□□□□□ -0.44
LIMA1-211ENST00000552338 PTCD1O75127 700 aaKnown RBP12.29□□□□□ -0.44
LIMA1-211ENST00000552338 STARD3NLO95772 234 aa12.29□□□□□ -0.44
LIMA1-211ENST00000552338 KIF16BQ96L93 1317 aa12.29□□□□□ -0.44
LIMA1-211ENST00000552338 IBTKQ9P2D0 1353 aaPredicted RBP12.29□□□□□ -0.44
LIMA1-211ENST00000552338 N4BP2Q86UW6 1770 aaPredicted RBP12.28□□□□□ -0.44
LIMA1-211ENST00000552338 BCAR3O75815 825 aa12.28□□□□□ -0.44
LIMA1-211ENST00000552338 DNAJC10Q8IXB1 793 aa12.28□□□□□ -0.44
LIMA1-211ENST00000552338 HYPKQ9NX55 129 aa12.28□□□□□ -0.44
LIMA1-211ENST00000552338 PTPRCP08575 1304 aa12.28□□□□□ -0.44
LIMA1-211ENST00000552338 CNTNAP4Q9C0A0 1308 aa12.28□□□□□ -0.44
LIMA1-211ENST00000552338 RGL2O15211 777 aa12.27□□□□□ -0.45
LIMA1-211ENST00000552338 SLC4A2P04920 1241 aa12.27□□□□□ -0.45
LIMA1-211ENST00000552338 ATP6V1AP38606 617 aa12.27□□□□□ -0.45
LIMA1-211ENST00000552338 ITPK1Q13572 414 aa12.27□□□□□ -0.45
LIMA1-211ENST00000552338 PROM2Q8N271 834 aa12.27□□□□□ -0.45
LIMA1-211ENST00000552338 RBM42Q9BTD8 480 aaKnown RBP12.27□□□□□ -0.45
LIMA1-211ENST00000552338 STK31Q9BXU1 1019 aa12.27□□□□□ -0.45
LIMA1-211ENST00000552338 C4BP0C0L5 1744 aa12.26□□□□□ -0.45
LIMA1-211ENST00000552338 QSER1Q2KHR3 1735 aa12.26□□□□□ -0.45
LIMA1-211ENST00000552338 UBR3Q6ZT12 1888 aa12.26□□□□□ -0.45
LIMA1-211ENST00000552338 NBPF26B4DH59 902 aa12.26□□□□□ -0.45
LIMA1-211ENST00000552338 IPO8O15397 1037 aaKnown RBP12.26□□□□□ -0.45
LIMA1-211ENST00000552338 IL6STP40189 918 aaPredicted RBP12.26□□□□□ -0.45
LIMA1-211ENST00000552338 PDE3AQ14432 1141 aa12.26□□□□□ -0.45
LIMA1-211ENST00000552338 NBPF14Q5TI25 921 aa12.26□□□□□ -0.45
LIMA1-211ENST00000552338 NBPF10Q6P3W6 841 aaKnown RBP12.26□□□□□ -0.45
LIMA1-211ENST00000552338 INTS5Q6P9B9 1019 aaKnown RBP12.26□□□□□ -0.45
LIMA1-211ENST00000552338 NBPF15Q8N660 670 aa12.26□□□□□ -0.45
LIMA1-211ENST00000552338 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.26□□□□□ -0.45
LIMA1-211ENST00000552338 SMC4Q9NTJ3 1288 aa12.26□□□□□ -0.45
LIMA1-211ENST00000552338 EP400Q96L91 3159 aa12.26□□□□□ -0.45
LIMA1-211ENST00000552338 EIF2S2P20042 333 aaKnown RBP12.25□□□□□ -0.45
LIMA1-211ENST00000552338 EIF5P55010 431 aaKnown RBP12.25□□□□□ -0.45
LIMA1-211ENST00000552338 RRP1P56182 461 aaKnown RBP12.25□□□□□ -0.45
LIMA1-211ENST00000552338 CAMKK2Q96RR4 588 aa12.25□□□□□ -0.45
LIMA1-211ENST00000552338 LRRC4BQ9NT99 713 aa12.25□□□□□ -0.45
LIMA1-211ENST00000552338 CHPF2Q9P2E5 772 aa12.25□□□□□ -0.45
LIMA1-211ENST00000552338 CCNL1Q9UK58 526 aaPredicted RBP12.25□□□□□ -0.45
LIMA1-211ENST00000552338 SUPT16HQ9Y5B9 1047 aaKnown RBP12.25□□□□□ -0.45
LIMA1-211ENST00000552338 PXDNLA1KZ92 1463 aa12.24□□□□□ -0.45
LIMA1-211ENST00000552338 APBA3O96018 575 aa12.24□□□□□ -0.45
LIMA1-211ENST00000552338 A1BGP04217 495 aa12.24□□□□□ -0.45
LIMA1-211ENST00000552338 MS4A1P11836 297 aa12.24□□□□□ -0.45
LIMA1-211ENST00000552338 FLIIQ13045 1269 aa12.24□□□□□ -0.45
LIMA1-211ENST00000552338 TXNRD1Q16881 649 aa12.24□□□□□ -0.45
LIMA1-211ENST00000552338 NUP188Q5SRE5 1749 aa12.24□□□□□ -0.45
LIMA1-211ENST00000552338 ZKSCAN2Q63HK3 967 aa12.24□□□□□ -0.45
LIMA1-211ENST00000552338 ATF7IPQ6VMQ6 1270 aa12.24□□□□□ -0.45
LIMA1-211ENST00000552338 NOB1Q9ULX3 412 aaKnown RBP12.24□□□□□ -0.45
LIMA1-211ENST00000552338 RPS6KA4O75676 772 aa12.23□□□□□ -0.45
LIMA1-211ENST00000552338 CRKLP46109 303 aaKnown RBP12.23□□□□□ -0.45
LIMA1-211ENST00000552338 PROSER3Q2NL68 480 aa12.23□□□□□ -0.45
LIMA1-211ENST00000552338 G2E3Q7L622 706 aa12.23□□□□□ -0.45
LIMA1-211ENST00000552338 LINC00116Q8NCU8 138 aa12.23□□□□□ -0.45
LIMA1-211ENST00000552338 API5Q9BZZ5 524 aaKnown RBP12.23□□□□□ -0.45
LIMA1-211ENST00000552338 CCDC87Q9NVE4 849 aa12.23□□□□□ -0.45
LIMA1-211ENST00000552338 NUP98P52948 1817 aa12.23□□□□□ -0.45
LIMA1-211ENST00000552338 ABCC4O15439 1325 aa12.22□□□□□ -0.45
LIMA1-211ENST00000552338 TRIM27P14373 513 aa12.22□□□□□ -0.45
LIMA1-211ENST00000552338 BCL2L13Q9BXK5 485 aa12.22□□□□□ -0.45
LIMA1-211ENST00000552338 PHAXQ9H814 394 aaKnown RBP12.22□□□□□ -0.45
LIMA1-211ENST00000552338 ZBTB1Q9Y2K1 713 aa12.22□□□□□ -0.45
LIMA1-211ENST00000552338 BCORQ6W2J9 1755 aa12.22□□□□□ -0.45
LIMA1-211ENST00000552338 ARFGEF2Q9Y6D5 1785 aa12.22□□□□□ -0.45
LIMA1-211ENST00000552338 ATP10DQ9P241 1426 aa12.21□□□□□ -0.45
LIMA1-211ENST00000552338 ERVV-1B6SEH8 477 aa12.21□□□□□ -0.45
LIMA1-211ENST00000552338 NPM3O75607 178 aaKnown RBP12.21□□□□□ -0.45
LIMA1-211ENST00000552338 BAG6P46379 1132 aa12.21□□□□□ -0.45
LIMA1-211ENST00000552338 INTS3Q68E01 1043 aaKnown RBP12.21□□□□□ -0.45
LIMA1-211ENST00000552338 KSR2Q6VAB6 950 aa12.21□□□□□ -0.45
LIMA1-211ENST00000552338 ANKRD36CQ5JPF3 1778 aa12.2□□□□□ -0.46
LIMA1-211ENST00000552338 DDX58O95786 925 aaKnown RBP12.2□□□□□ -0.46
LIMA1-211ENST00000552338 ERICH6BQ5W0A0 696 aa12.2□□□□□ -0.46
LIMA1-211ENST00000552338 COPS6Q7L5N1 327 aa12.2□□□□□ -0.46
LIMA1-211ENST00000552338 PLBD2Q8NHP8 589 aa12.2□□□□□ -0.46
LIMA1-211ENST00000552338 AKT1S1Q96B36 256 aa12.2□□□□□ -0.46
LIMA1-211ENST00000552338 TUBGCP6Q96RT7 1819 aa12.2□□□□□ -0.46
LIMA1-211ENST00000552338 C4AP0C0L4 1744 aa12.2□□□□□ -0.46
LIMA1-211ENST00000552338 ADCY9O60503 1353 aa12.19□□□□□ -0.46
LIMA1-211ENST00000552338 A0A087WZG4 1122 aa12.19□□□□□ -0.46
LIMA1-211ENST00000552338 TCERG1O14776 1098 aaKnown RBP12.19□□□□□ -0.46
LIMA1-211ENST00000552338 C1QBPQ07021 282 aaKnown RBP12.19□□□□□ -0.46
LIMA1-211ENST00000552338 TRIM28Q13263 835 aaKnown RBP12.19□□□□□ -0.46
LIMA1-211ENST00000552338 SF3B2Q13435 895 aaKnown RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms