RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 RECKO95980 971 aa9.89□□□□□ -0.83
LIMA1-210ENST00000552045 FMR1Q06787 632 aaKnown RBP eCLIP9.89□□□□□ -0.83
LIMA1-210ENST00000552045 AAMPQ13685 434 aa9.89□□□□□ -0.83
LIMA1-210ENST00000552045 TLR1Q15399 786 aa9.89□□□□□ -0.83
LIMA1-210ENST00000552045 ESYT1Q9BSJ8 1104 aa9.89□□□□□ -0.83
LIMA1-210ENST00000552045 CCDC87Q9NVE4 849 aa9.89□□□□□ -0.83
LIMA1-210ENST00000552045 USP35Q9P2H5 1018 aa9.89□□□□□ -0.83
LIMA1-210ENST00000552045 LRFN2Q9ULH4 789 aa9.89□□□□□ -0.83
LIMA1-210ENST00000552045 USP3Q9Y6I4 520 aa9.89□□□□□ -0.83
LIMA1-210ENST00000552045 DSC3Q14574 896 aa9.88□□□□□ -0.83
LIMA1-210ENST00000552045 SPRYD7Q5W111 196 aa9.88□□□□□ -0.83
LIMA1-210ENST00000552045 TMC1Q8TDI8 760 aa9.88□□□□□ -0.83
LIMA1-210ENST00000552045 PRKD2Q9BZL6 878 aa9.88□□□□□ -0.83
LIMA1-210ENST00000552045 SHROOM4Q9ULL8 1493 aa9.87□□□□□ -0.83
LIMA1-210ENST00000552045 RGS20O76081 388 aa9.87□□□□□ -0.83
LIMA1-210ENST00000552045 ADH1AP07327 375 aa9.87□□□□□ -0.83
LIMA1-210ENST00000552045 ABTB2Q8N961 1025 aa9.87□□□□□ -0.83
LIMA1-210ENST00000552045 DMRTB1Q96MA1 342 aa9.87□□□□□ -0.83
LIMA1-210ENST00000552045 PLCB3Q01970 1234 aa9.86□□□□□ -0.83
LIMA1-210ENST00000552045 NBPF15Q8N660 670 aa9.86□□□□□ -0.83
LIMA1-210ENST00000552045 KDF1Q8NAX2 398 aaPredicted RBP9.86□□□□□ -0.83
LIMA1-210ENST00000552045 SERTM1A2A2V5 107 aa9.85□□□□□ -0.83
LIMA1-210ENST00000552045 EML1O00423 815 aa9.85□□□□□ -0.83
LIMA1-210ENST00000552045 ZBTB39O15060 712 aa9.85□□□□□ -0.83
LIMA1-210ENST00000552045 IGHA2P01877 340 aa9.85□□□□□ -0.83
LIMA1-210ENST00000552045 BRD2P25440 801 aaKnown RBP9.85□□□□□ -0.83
LIMA1-210ENST00000552045 HIRAP54198 1017 aaPredicted RBP9.85□□□□□ -0.83
LIMA1-210ENST00000552045 CLN3Q13286 438 aa9.85□□□□□ -0.83
LIMA1-210ENST00000552045 TEAD4Q15561 434 aa9.85□□□□□ -0.83
LIMA1-210ENST00000552045 TSNAXIP1Q2TAA8 658 aa9.85□□□□□ -0.83
LIMA1-210ENST00000552045 ZNF598Q86UK7 904 aaKnown RBP9.85□□□□□ -0.83
LIMA1-210ENST00000552045 NGLY1Q96IV0 654 aa9.85□□□□□ -0.83
LIMA1-210ENST00000552045 FAM129BQ96TA1 746 aa9.85□□□□□ -0.83
LIMA1-210ENST00000552045 NOS2P35228 1153 aa9.84□□□□□ -0.83
LIMA1-210ENST00000552045 EHHADHQ08426 723 aa9.84□□□□□ -0.83
LIMA1-210ENST00000552045 PDE3BQ13370 1112 aa9.84□□□□□ -0.83
LIMA1-210ENST00000552045 NNTQ13423 1086 aa9.84□□□□□ -0.83
LIMA1-210ENST00000552045 MRPL58Q14197 206 aaKnown RBP9.84□□□□□ -0.83
LIMA1-210ENST00000552045 FAM26DQ5JW98 314 aa9.84□□□□□ -0.83
LIMA1-210ENST00000552045 SH3PXD2AQ5TCZ1 1133 aa9.84□□□□□ -0.83
LIMA1-210ENST00000552045 ZDHHC1Q8WTX9 485 aa9.84□□□□□ -0.83
LIMA1-210ENST00000552045 FHDC1Q9C0D6 1143 aaPredicted RBP9.84□□□□□ -0.83
LIMA1-210ENST00000552045 LDHBP07195 334 aaKnown RBP9.83□□□□□ -0.84
LIMA1-210ENST00000552045 FGD1P98174 961 aa9.83□□□□□ -0.84
LIMA1-210ENST00000552045 CENPCQ03188 943 aa9.83□□□□□ -0.84
LIMA1-210ENST00000552045 CBLBQ13191 982 aa9.83□□□□□ -0.84
LIMA1-210ENST00000552045 ATCAYQ86WG3 371 aa9.83□□□□□ -0.84
LIMA1-210ENST00000552045 ALDH16A1Q8IZ83 802 aa9.83□□□□□ -0.84
LIMA1-210ENST00000552045 GPR182O15218 404 aa9.82□□□□□ -0.84
LIMA1-210ENST00000552045 ALDH1A1P00352 501 aa9.82□□□□□ -0.84
LIMA1-210ENST00000552045 MAPK8P45983 427 aa9.82□□□□□ -0.84
LIMA1-210ENST00000552045 C11orf91Q3C1V1 193 aa9.82□□□□□ -0.84
LIMA1-210ENST00000552045 ZNF697Q5TEC3 545 aa9.82□□□□□ -0.84
LIMA1-210ENST00000552045 Q6ZVU0 165 aa9.82□□□□□ -0.84
LIMA1-210ENST00000552045 ZNF295-AS1Q8N0V1 137 aa9.82□□□□□ -0.84
LIMA1-210ENST00000552045 ALKBH8Q96BT7 664 aaKnown RBP9.82□□□□□ -0.84
LIMA1-210ENST00000552045 BACH2Q9BYV9 841 aa9.82□□□□□ -0.84
LIMA1-210ENST00000552045 CABP1Q9NZU7 370 aa9.82□□□□□ -0.84
LIMA1-210ENST00000552045 ZNF232Q9UNY5 417 aa9.82□□□□□ -0.84
LIMA1-210ENST00000552045 HCN4Q9Y3Q4 1203 aa9.82□□□□□ -0.84
LIMA1-210ENST00000552045 PRPF40AO75400 957 aaKnown RBP9.81□□□□□ -0.84
LIMA1-210ENST00000552045 PTGIRP43119 386 aa9.81□□□□□ -0.84
LIMA1-210ENST00000552045 RTN1Q16799 776 aa9.81□□□□□ -0.84
LIMA1-210ENST00000552045 L3MBTL2Q969R5 705 aa9.81□□□□□ -0.84
LIMA1-210ENST00000552045 C8orf37Q96NL8 207 aa9.81□□□□□ -0.84
LIMA1-210ENST00000552045 WASF2Q9Y6W5 498 aa9.81□□□□□ -0.84
LIMA1-210ENST00000552045 XPCQ01831 940 aaPredicted RBP9.8□□□□□ -0.84
LIMA1-210ENST00000552045 DGKZQ13574 1117 aa9.8□□□□□ -0.84
LIMA1-210ENST00000552045 PPARGC1BQ86YN6 1023 aaKnown RBP9.8□□□□□ -0.84
LIMA1-210ENST00000552045 ETFBKMTQ8IXQ9 262 aa9.8□□□□□ -0.84
LIMA1-210ENST00000552045 NLRP3Q96P20 1036 aa9.8□□□□□ -0.84
LIMA1-210ENST00000552045 POLIQ9UNA4 740 aa9.8□□□□□ -0.84
LIMA1-210ENST00000552045 MEN1O00255 615 aa9.79□□□□□ -0.84
LIMA1-210ENST00000552045 MZF1P28698 734 aaPredicted RBP9.79□□□□□ -0.84
LIMA1-210ENST00000552045 GJD3Q8N144 294 aa9.79□□□□□ -0.84
LIMA1-210ENST00000552045 ITPKCQ96DU7 683 aa9.79□□□□□ -0.84
LIMA1-210ENST00000552045 KLF16Q9BXK1 252 aaPredicted RBP9.79□□□□□ -0.84
LIMA1-210ENST00000552045 PARP2Q9UGN5 583 aa9.79□□□□□ -0.84
LIMA1-210ENST00000552045 PARP3Q9Y6F1 533 aa9.79□□□□□ -0.84
LIMA1-210ENST00000552045 USP5P45974 858 aa9.78□□□□□ -0.84
LIMA1-210ENST00000552045 IFT43Q96FT9 208 aa9.78□□□□□ -0.84
LIMA1-210ENST00000552045 AGBL1Q96MI9 1066 aa9.78□□□□□ -0.84
LIMA1-210ENST00000552045 ZSCAN10Q96SZ4 725 aaPredicted RBP9.78□□□□□ -0.84
LIMA1-210ENST00000552045 DUSP9Q99956 384 aaKnown RBP9.78□□□□□ -0.84
LIMA1-210ENST00000552045 PHACTR1Q9C0D0 580 aa9.78□□□□□ -0.84
LIMA1-210ENST00000552045 NIF3L1Q9GZT8 377 aa9.78□□□□□ -0.84
LIMA1-210ENST00000552045 KLK14Q9P0G3 267 aa9.78□□□□□ -0.84
LIMA1-210ENST00000552045 SCAMP3O14828 347 aaKnown RBP9.77□□□□□ -0.85
LIMA1-210ENST00000552045 ZIC2O95409 532 aaPredicted RBP9.77□□□□□ -0.85
LIMA1-210ENST00000552045 ZAP70P43403 619 aa9.77□□□□□ -0.85
LIMA1-210ENST00000552045 ZC3H6P61129 1189 aaKnown RBP9.77□□□□□ -0.85
LIMA1-210ENST00000552045 ATP2B2Q01814 1243 aa9.77□□□□□ -0.85
LIMA1-210ENST00000552045 DNM1Q05193 864 aaKnown RBP9.77□□□□□ -0.85
LIMA1-210ENST00000552045 LDLRAD1Q5T700 205 aa9.77□□□□□ -0.85
LIMA1-210ENST00000552045 TMC4Q7Z404 712 aa9.77□□□□□ -0.85
LIMA1-210ENST00000552045 EDEM1Q92611 657 aa9.77□□□□□ -0.85
LIMA1-210ENST00000552045 FAM161BQ96MY7 647 aa9.77□□□□□ -0.85
LIMA1-210ENST00000552045 NIFKQ9BYG3 293 aaKnown RBP9.77□□□□□ -0.85
LIMA1-210ENST00000552045 PKD2L1Q9P0L9 805 aa9.77□□□□□ -0.85
LIMA1-210ENST00000552045 WWC3Q9ULE0 1092 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms