RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 FHDC1Q9C0D6 1143 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-209ENST00000552008 ELOA3CA0A087WX78 387 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-209ENST00000552008 DCDC2BA2VCK2 349 aa4.9□□□□□ -1.63
LIMA1-209ENST00000552008 ELOA3DA6NLF2 546 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-209ENST00000552008 MAPTP10636 758 aaKnown RBP4.9□□□□□ -1.63
LIMA1-209ENST00000552008 PRKCSHP14314 528 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-209ENST00000552008 ALAS2P22557 587 aa4.9□□□□□ -1.63
LIMA1-209ENST00000552008 ELOA3BQ3SY89 546 aa4.9□□□□□ -1.63
LIMA1-209ENST00000552008 ZNF468Q5VIY5 522 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-209ENST00000552008 ELOA3Q8NG57 546 aa4.9□□□□□ -1.63
LIMA1-209ENST00000552008 RSPH6AQ9H0K4 717 aa4.9□□□□□ -1.63
LIMA1-209ENST00000552008 HCN2Q9UL51 889 aa4.9□□□□□ -1.63
LIMA1-209ENST00000552008 PRR12Q9ULL5 1215 aa4.9□□□□□ -1.63
LIMA1-209ENST00000552008 PCDHB11Q9Y5F2 797 aa4.9□□□□□ -1.63
LIMA1-209ENST00000552008 HRH3Q9Y5N1 445 aa4.9□□□□□ -1.63
LIMA1-209ENST00000552008 C9orf172C9J069 976 aa4.89□□□□□ -1.63
LIMA1-209ENST00000552008 AP1G2O75843 785 aa4.89□□□□□ -1.63
LIMA1-209ENST00000552008 TNP2Q05952 138 aa4.89□□□□□ -1.63
LIMA1-209ENST00000552008 ADGRE1Q14246 886 aa4.89□□□□□ -1.63
LIMA1-209ENST00000552008 MBTPS1Q14703 1052 aa4.89□□□□□ -1.63
LIMA1-209ENST00000552008 NLRP8Q86W28 1048 aa4.89□□□□□ -1.63
LIMA1-209ENST00000552008 HMX1Q9NP08 348 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-209ENST00000552008 RNF112Q9ULX5 631 aa4.89□□□□□ -1.63
LIMA1-209ENST00000552008 M0R082 166 aa4.88□□□□□ -1.63
LIMA1-209ENST00000552008 KHNYNO15037 678 aaKnown RBP4.88□□□□□ -1.63
LIMA1-209ENST00000552008 COL9A3Q14050 684 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-209ENST00000552008 FBXO31Q5XUX0 539 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-209ENST00000552008 TBC1D9Q6ZT07 1266 aa4.88□□□□□ -1.63
LIMA1-209ENST00000552008 TXNRD3Q86VQ6 643 aa4.88□□□□□ -1.63
LIMA1-209ENST00000552008 ZNF417Q8TAU3 575 aa4.88□□□□□ -1.63
LIMA1-209ENST00000552008 RHBDD1Q8TEB9 315 aa4.88□□□□□ -1.63
LIMA1-209ENST00000552008 TP53INP1Q96A56 240 aa4.88□□□□□ -1.63
LIMA1-209ENST00000552008 XAGE2Q96GT9 111 aa4.88□□□□□ -1.63
LIMA1-209ENST00000552008 ZNF587Q96SQ5 575 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-209ENST00000552008 ZBBXA8MT70 800 aa4.87□□□□□ -1.63
LIMA1-209ENST00000552008 PLA2G4AP47712 749 aa4.87□□□□□ -1.63
LIMA1-209ENST00000552008 IRAK1P51617 712 aa4.87□□□□□ -1.63
LIMA1-209ENST00000552008 PCMTD2Q9NV79 361 aa4.87□□□□□ -1.63
LIMA1-209ENST00000552008 ZC3H15Q8WU90 426 aaKnown RBP4.86□□□□□ -1.63
LIMA1-209ENST00000552008 AK7Q96M32 723 aa4.86□□□□□ -1.63
LIMA1-209ENST00000552008 PRDM6Q9NQX0 595 aa4.86□□□□□ -1.63
LIMA1-209ENST00000552008 SELPP16109 830 aa4.85□□□□□ -1.63
LIMA1-209ENST00000552008 ATP4AP20648 1035 aa4.85□□□□□ -1.63
LIMA1-209ENST00000552008 LAMC2Q13753 1193 aa4.85□□□□□ -1.63
LIMA1-209ENST00000552008 ESCO1Q5FWF5 840 aa4.85□□□□□ -1.63
LIMA1-209ENST00000552008 PPARGC1BQ86YN6 1023 aaKnown RBP4.85□□□□□ -1.63
LIMA1-209ENST00000552008 C1orf216Q8TAB5 229 aa4.85□□□□□ -1.63
LIMA1-209ENST00000552008 MDFIQ99750 246 aa4.85□□□□□ -1.63
LIMA1-209ENST00000552008 RNF114Q9Y508 228 aa4.85□□□□□ -1.63
LIMA1-209ENST00000552008 A0A1W2PNR3 127 aa4.84□□□□□ -1.63
LIMA1-209ENST00000552008 ALBP02768 609 aa4.84□□□□□ -1.63
LIMA1-209ENST00000552008 FBXO45P0C2W1 286 aa4.84□□□□□ -1.63
LIMA1-209ENST00000552008 USP17L8P0C7I0 530 aa4.84□□□□□ -1.63
LIMA1-209ENST00000552008 FAM157BP0CG42 384 aa4.84□□□□□ -1.63
LIMA1-209ENST00000552008 NID1P14543 1247 aa4.84□□□□□ -1.63
LIMA1-209ENST00000552008 NRG1Q02297 640 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-209ENST00000552008 PDE4DQ08499 809 aa4.84□□□□□ -1.63
LIMA1-209ENST00000552008 C8orf86Q6ZUL3 223 aa4.84□□□□□ -1.63
LIMA1-209ENST00000552008 SYT9Q86SS6 491 aa4.84□□□□□ -1.63
LIMA1-209ENST00000552008 MICALL1Q8N3F8 863 aa4.84□□□□□ -1.63
LIMA1-209ENST00000552008 MYCP01106 439 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-209ENST00000552008 TAL1P17542 331 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-209ENST00000552008 TLR1Q15399 786 aa4.83□□□□□ -1.64
LIMA1-209ENST00000552008 ARSJQ5FYB0 599 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-209ENST00000552008 TRAPPC3LQ5T215 181 aa4.83□□□□□ -1.64
LIMA1-209ENST00000552008 AIDAQ96BJ3 306 aa4.83□□□□□ -1.64
LIMA1-209ENST00000552008 LENG1Q96BZ8 264 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-209ENST00000552008 MARK1Q9P0L2 795 aa4.83□□□□□ -1.64
LIMA1-209ENST00000552008 STARD13Q9Y3M8 1113 aa4.83□□□□□ -1.64
LIMA1-209ENST00000552008 ADARB2-AS1A8MUL3 147 aa4.82□□□□□ -1.64
LIMA1-209ENST00000552008 MCCD1P59942 119 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-209ENST00000552008 SSBP4Q9BWG4 385 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-209ENST00000552008 STRN4Q9NRL3 753 aa4.82□□□□□ -1.64
LIMA1-209ENST00000552008 ATP1B4Q9UN42 357 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-209ENST00000552008 SIN3BO75182 1162 aa4.81□□□□□ -1.64
LIMA1-209ENST00000552008 SHISA2Q6UWI4 295 aa4.81□□□□□ -1.64
LIMA1-209ENST00000552008 PROCA1Q8NCQ7 364 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-209ENST00000552008 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.81□□□□□ -1.64
LIMA1-209ENST00000552008 GJA3Q9Y6H8 435 aa4.81□□□□□ -1.64
LIMA1-209ENST00000552008 A0A0A0MRY4 1105 aa4.8□□□□□ -1.64
LIMA1-209ENST00000552008 SSTR4P31391 388 aa4.8□□□□□ -1.64
LIMA1-209ENST00000552008 SKIV2LQ15477 1246 aaKnown RBP4.8□□□□□ -1.64
LIMA1-209ENST00000552008 ZNF592Q92610 1267 aa4.8□□□□□ -1.64
LIMA1-209ENST00000552008 TRIM34Q9BYJ4 488 aa4.8□□□□□ -1.64
LIMA1-209ENST00000552008 USP21Q9UK80 565 aa4.8□□□□□ -1.64
LIMA1-209ENST00000552008 EFSO43281 561 aa4.79□□□□□ -1.64
LIMA1-209ENST00000552008 STAU1O95793 577 aaKnown RBP4.79□□□□□ -1.64
LIMA1-209ENST00000552008 RAC1P63000 192 aa4.79□□□□□ -1.64
LIMA1-209ENST00000552008 NBPF1Q3BBV0 1214 aa4.79□□□□□ -1.64
LIMA1-209ENST00000552008 TNFRSF25Q93038 417 aa4.79□□□□□ -1.64
LIMA1-209ENST00000552008 CDCA7Q9BWT1 371 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-209ENST00000552008 NIFKQ9BYG3 293 aaKnown RBP4.79□□□□□ -1.64
LIMA1-209ENST00000552008 ETNK1Q9HBU6 452 aa4.79□□□□□ -1.64
LIMA1-209ENST00000552008 TATP17735 454 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-209ENST00000552008 ADH7P40394 386 aa4.78□□□□□ -1.64
LIMA1-209ENST00000552008 JAG1P78504 1218 aa4.78□□□□□ -1.64
LIMA1-209ENST00000552008 SAMD5Q5TGI4 173 aa4.78□□□□□ -1.64
LIMA1-209ENST00000552008 ZIC5Q96T25 663 aa4.78□□□□□ -1.64
LIMA1-209ENST00000552008 OAS3Q9Y6K5 1087 aaKnown RBP4.78□□□□□ -1.64
LIMA1-209ENST00000552008 LILRB5O75023 590 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms