RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 ZBTB1Q9Y2K1 713 aa14.48□□□□□ -0.09
VTI1BP3-201ENST00000550220 HEG1Q9ULI3 1381 aa14.47□□□□□ -0.09
VTI1BP3-201ENST00000550220 COL5A3P25940 1745 aaPredicted RBP14.47□□□□□ -0.09
VTI1BP3-201ENST00000550220 POLRMTO00411 1230 aaKnown RBP14.47□□□□□ -0.09
VTI1BP3-201ENST00000550220 CANXP27824 592 aaKnown RBP14.47□□□□□ -0.09
VTI1BP3-201ENST00000550220 EIF5P55010 431 aaKnown RBP14.47□□□□□ -0.09
VTI1BP3-201ENST00000550220 CICQ96RK0 1608 aaPredicted RBP14.47□□□□□ -0.09
VTI1BP3-201ENST00000550220 COL15A1P39059 1388 aa14.47□□□□□ -0.09
VTI1BP3-201ENST00000550220 GOLGB1Q14789 3259 aaKnown RBP14.46□□□□□ -0.09
VTI1BP3-201ENST00000550220 PXDNLA1KZ92 1463 aa14.46□□□□□ -0.09
VTI1BP3-201ENST00000550220 IL6STP40189 918 aaPredicted RBP14.46□□□□□ -0.09
VTI1BP3-201ENST00000550220 DDR1Q08345 913 aa14.46□□□□□ -0.09
VTI1BP3-201ENST00000550220 GPBP1L1Q9HC44 474 aaPredicted RBP14.46□□□□□ -0.09
VTI1BP3-201ENST00000550220 KCPQ6ZWJ8 1503 aa14.46□□□□□ -0.1
VTI1BP3-201ENST00000550220 ADAMTS7Q9UKP4 1686 aa14.46□□□□□ -0.1
VTI1BP3-201ENST00000550220 MYH14Q7Z406 1995 aaKnown RBP14.45□□□□□ -0.1
VTI1BP3-201ENST00000550220 DALRD3Q5D0E6 543 aaKnown RBP14.45□□□□□ -0.1
VTI1BP3-201ENST00000550220 WWC3Q9ULE0 1092 aa14.45□□□□□ -0.1
VTI1BP3-201ENST00000550220 SNRPA1P09661 255 aaKnown RBP14.44□□□□□ -0.1
VTI1BP3-201ENST00000550220 NFIXQ14938 502 aa14.44□□□□□ -0.1
VTI1BP3-201ENST00000550220 RALBP1Q15311 655 aa14.44□□□□□ -0.1
VTI1BP3-201ENST00000550220 ARHGAP27Q6ZUM4 889 aa14.44□□□□□ -0.1
VTI1BP3-201ENST00000550220 PDZRN3Q9UPQ7 1066 aa14.44□□□□□ -0.1
VTI1BP3-201ENST00000550220 ATP10DQ9P241 1426 aa14.43□□□□□ -0.1
VTI1BP3-201ENST00000550220 SERPINB2P05120 415 aa14.43□□□□□ -0.1
VTI1BP3-201ENST00000550220 KCNA3P22001 575 aa14.43□□□□□ -0.1
VTI1BP3-201ENST00000550220 TAF7Q15545 349 aaPredicted RBP14.43□□□□□ -0.1
VTI1BP3-201ENST00000550220 PNISRQ8TF01 805 aaKnown RBP14.43□□□□□ -0.1
VTI1BP3-201ENST00000550220 C4AP0C0L4 1744 aa14.43□□□□□ -0.1
VTI1BP3-201ENST00000550220 TJP1Q07157 1748 aa14.42□□□□□ -0.1
VTI1BP3-201ENST00000550220 MCM10Q7L590 875 aa14.42□□□□□ -0.1
VTI1BP3-201ENST00000550220 BCL2L12Q9HB09 334 aa14.42□□□□□ -0.1
VTI1BP3-201ENST00000550220 ADCY9O60503 1353 aa14.42□□□□□ -0.1
VTI1BP3-201ENST00000550220 RGL2O15211 777 aa14.41□□□□□ -0.1
VTI1BP3-201ENST00000550220 A1BGP04217 495 aa14.4□□□□□ -0.1
VTI1BP3-201ENST00000550220 CLEC4GQ6UXB4 293 aa14.4□□□□□ -0.1
VTI1BP3-201ENST00000550220 ZNF330Q9Y3S2 320 aaPredicted RBP14.4□□□□□ -0.1
VTI1BP3-201ENST00000550220 KIF13BQ9NQT8 1826 aa14.39□□□□□ -0.11
VTI1BP3-201ENST00000550220 SENP3-EIF4A1A0A087X0R7 540 aa14.39□□□□□ -0.11
VTI1BP3-201ENST00000550220 H0YIN7 160 aa14.39□□□□□ -0.11
VTI1BP3-201ENST00000550220 KCNQ3O43525 872 aa14.39□□□□□ -0.11
VTI1BP3-201ENST00000550220 CHRNA5P30532 468 aa14.39□□□□□ -0.11
VTI1BP3-201ENST00000550220 PDE6BP35913 854 aa14.39□□□□□ -0.11
VTI1BP3-201ENST00000550220 SETDB2Q96T68 719 aa14.39□□□□□ -0.11
VTI1BP3-201ENST00000550220 TBC1D2BQ9UPU7 963 aa14.39□□□□□ -0.11
VTI1BP3-201ENST00000550220 USP16Q9Y5T5 823 aa14.39□□□□□ -0.11
VTI1BP3-201ENST00000550220 MAPK8IP3Q9UPT6 1336 aa14.39□□□□□ -0.11
VTI1BP3-201ENST00000550220 NFE2L2Q16236 605 aa14.38□□□□□ -0.11
VTI1BP3-201ENST00000550220 BICDL1Q6ZP65 573 aa14.38□□□□□ -0.11
VTI1BP3-201ENST00000550220 PLEKHF1Q96S99 279 aa14.38□□□□□ -0.11
VTI1BP3-201ENST00000550220 ZNF652Q9Y2D9 606 aa14.38□□□□□ -0.11
VTI1BP3-201ENST00000550220 DCTN1Q14203 1278 aa14.37□□□□□ -0.11
VTI1BP3-201ENST00000550220 TBC1D9BQ66K14 1250 aa14.37□□□□□ -0.11
VTI1BP3-201ENST00000550220 DZIP3Q86Y13 1208 aaKnown RBP14.37□□□□□ -0.11
VTI1BP3-201ENST00000550220 C2CD5Q86YS7 1000 aa14.37□□□□□ -0.11
VTI1BP3-201ENST00000550220 TTLL6Q8N841 843 aa14.37□□□□□ -0.11
VTI1BP3-201ENST00000550220 ZNF526Q8TF50 670 aaPredicted RBP14.37□□□□□ -0.11
VTI1BP3-201ENST00000550220 BRIP1Q9BX63 1249 aa14.37□□□□□ -0.11
VTI1BP3-201ENST00000550220 CARMIL3Q8ND23 1372 aa14.36□□□□□ -0.11
VTI1BP3-201ENST00000550220 NPHP1O15259 732 aa14.36□□□□□ -0.11
VTI1BP3-201ENST00000550220 CAMTA2O94983 1202 aa14.36□□□□□ -0.11
VTI1BP3-201ENST00000550220 UBR2Q8IWV8 1755 aa14.36□□□□□ -0.11
VTI1BP3-201ENST00000550220 ST5P78524 1137 aa14.35□□□□□ -0.11
VTI1BP3-201ENST00000550220 C9orf131Q5VYM1 1079 aa14.35□□□□□ -0.11
VTI1BP3-201ENST00000550220 LMOD3Q0VAK6 560 aa14.34□□□□□ -0.11
VTI1BP3-201ENST00000550220 DDX10Q13206 875 aaKnown RBP14.34□□□□□ -0.11
VTI1BP3-201ENST00000550220 PRR5LQ6MZQ0 368 aa14.34□□□□□ -0.11
VTI1BP3-201ENST00000550220 CNBD1Q8NA66 436 aa14.34□□□□□ -0.11
VTI1BP3-201ENST00000550220 BABAM1Q9NWV8 329 aa14.34□□□□□ -0.11
VTI1BP3-201ENST00000550220 TPTE2Q6XPS3 522 aa14.33□□□□□ -0.12
VTI1BP3-201ENST00000550220 CNKSR1Q969H4 720 aa14.33□□□□□ -0.12
VTI1BP3-201ENST00000550220 MIS18AQ9NYP9 233 aa14.33□□□□□ -0.12
VTI1BP3-201ENST00000550220 KDM2BQ8NHM5 1336 aa14.33□□□□□ -0.12
VTI1BP3-201ENST00000550220 MYBBP1AQ9BQG0 1328 aaKnown RBP14.33□□□□□ -0.12
VTI1BP3-201ENST00000550220 ZC3H4Q9UPT8 1303 aaKnown RBP14.33□□□□□ -0.12
VTI1BP3-201ENST00000550220 PRAMEF22A3QJZ6 481 aa14.32□□□□□ -0.12
VTI1BP3-201ENST00000550220 KIF3CO14782 793 aa14.32□□□□□ -0.12
VTI1BP3-201ENST00000550220 TOMM70O94826 608 aa14.32□□□□□ -0.12
VTI1BP3-201ENST00000550220 NBPF5PQ86XG9 351 aaPredicted RBP14.32□□□□□ -0.12
VTI1BP3-201ENST00000550220 ZNF622Q969S3 477 aaKnown RBP eCLIP14.32□□□□□ -0.12
VTI1BP3-201ENST00000550220 RNF181Q9P0P0 153 aa14.32□□□□□ -0.12
VTI1BP3-201ENST00000550220 N4BP2Q86UW6 1770 aaPredicted RBP14.32□□□□□ -0.12
VTI1BP3-201ENST00000550220 NBPF26B4DH59 902 aa14.31□□□□□ -0.12
VTI1BP3-201ENST00000550220 LMNB1P20700 586 aa14.31□□□□□ -0.12
VTI1BP3-201ENST00000550220 RIPK4P57078 832 aa14.31□□□□□ -0.12
VTI1BP3-201ENST00000550220 EIF4A1P60842 406 aaKnown RBP14.31□□□□□ -0.12
VTI1BP3-201ENST00000550220 SOGA3Q5TF21 947 aa14.31□□□□□ -0.12
VTI1BP3-201ENST00000550220 STYK1Q6J9G0 422 aa14.31□□□□□ -0.12
VTI1BP3-201ENST00000550220 NBPF10Q6P3W6 841 aaKnown RBP14.31□□□□□ -0.12
VTI1BP3-201ENST00000550220 NBPF15Q8N660 670 aa14.31□□□□□ -0.12
VTI1BP3-201ENST00000550220 KIAA1551Q9HCM1 1747 aa14.31□□□□□ -0.12
VTI1BP3-201ENST00000550220 SIPA1L3O60292 1781 aaPredicted RBP14.31□□□□□ -0.12
VTI1BP3-201ENST00000550220 VIRMAQ69YN4 1812 aaKnown RBP14.31□□□□□ -0.12
VTI1BP3-201ENST00000550220 ERVV-1B6SEH8 477 aa14.3□□□□□ -0.12
VTI1BP3-201ENST00000550220 NIP7Q9Y221 180 aaKnown RBP eCLIP14.3□□□□□ -0.12
VTI1BP3-201ENST00000550220 HSPA6P17066 643 aa14.29□□□□□ -0.12
VTI1BP3-201ENST00000550220 PIP4K2AP48426 406 aaPredicted RBP14.29□□□□□ -0.12
VTI1BP3-201ENST00000550220 WDR43Q15061 677 aaKnown RBP eCLIP14.29□□□□□ -0.12
VTI1BP3-201ENST00000550220 C16orf71Q8IYS4 520 aaPredicted RBP14.29□□□□□ -0.12
VTI1BP3-201ENST00000550220 MASTLQ96GX5 879 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms