RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 RIPK4P57078 832 aa15.1■□□□□ 0.01
YBX3-216ENST00000544622 RUNDC1Q96C34 613 aa15.1■□□□□ 0.01
YBX3-216ENST00000544622 CD2APQ9Y5K6 639 aa15.1■□□□□ 0.01
YBX3-216ENST00000544622 USP16Q9Y5T5 823 aa15.1■□□□□ 0.01
YBX3-216ENST00000544622 C4AP0C0L4 1744 aa15.09■□□□□ 0.01
YBX3-216ENST00000544622 WDR43Q15061 677 aaKnown RBP eCLIP15.09■□□□□ 0.01
YBX3-216ENST00000544622 CCDC184Q52MB2 194 aa15.09■□□□□ 0.01
YBX3-216ENST00000544622 NLGN2Q8NFZ4 835 aa15.09■□□□□ 0.01
YBX3-216ENST00000544622 THUMPD2Q9BTF0 503 aaKnown RBP15.09■□□□□ 0.01
YBX3-216ENST00000544622 MIS18AQ9NYP9 233 aa15.09■□□□□ 0.01
YBX3-216ENST00000544622 PRAMEF22A3QJZ6 481 aa15.08■□□□□ 0
YBX3-216ENST00000544622 MMP10P09238 476 aa15.08■□□□□ 0
YBX3-216ENST00000544622 SNRPA1P09661 255 aaKnown RBP15.08■□□□□ 0
YBX3-216ENST00000544622 CCDC146Q8IYE0 955 aa15.08■□□□□ 0
YBX3-216ENST00000544622 PNISRQ8TF01 805 aaKnown RBP15.08■□□□□ 0
YBX3-216ENST00000544622 SRP68Q9UHB9 627 aaKnown RBP15.08■□□□□ 0
YBX3-216ENST00000544622 NARFQ9UHQ1 456 aa15.08■□□□□ 0
YBX3-216ENST00000544622 A1BGP04217 495 aa15.07■□□□□ 0
YBX3-216ENST00000544622 CANXP27824 592 aaKnown RBP15.07■□□□□ 0
YBX3-216ENST00000544622 TM4SF1P30408 202 aa15.07■□□□□ 0
YBX3-216ENST00000544622 FKBP8Q14318 412 aa15.07■□□□□ 0
YBX3-216ENST00000544622 BCL2L12Q9HB09 334 aa15.07■□□□□ 0
YBX3-216ENST00000544622 TRIM35Q9UPQ4 493 aa15.07■□□□□ 0
YBX3-216ENST00000544622 COL15A1P39059 1388 aa15.07■□□□□ 0
YBX3-216ENST00000544622 IL6STP40189 918 aaPredicted RBP15.06■□□□□ 0
YBX3-216ENST00000544622 EIF4A1P60842 406 aaKnown RBP15.06■□□□□ 0
YBX3-216ENST00000544622 USPL1Q5W0Q7 1092 aa15.06■□□□□ 0
YBX3-216ENST00000544622 BABAM1Q9NWV8 329 aa15.06■□□□□ 0
YBX3-216ENST00000544622 GIGYF1O75420 1035 aaPredicted RBP15.05■□□□□ -0
YBX3-216ENST00000544622 KDM3BQ7LBC6 1761 aa15.04■□□□□ -0
YBX3-216ENST00000544622 ZPR1O75312 459 aa15.04■□□□□ -0
YBX3-216ENST00000544622 LMOD3Q0VAK6 560 aa15.04■□□□□ -0
YBX3-216ENST00000544622 RRP7AQ9Y3A4 280 aaKnown RBP15.04■□□□□ -0
YBX3-216ENST00000544622 ANP32CO43423 234 aa15.03■□□□□ -0
YBX3-216ENST00000544622 DDR1Q08345 913 aa15.03■□□□□ -0
YBX3-216ENST00000544622 KLHL34Q8N239 644 aa15.03■□□□□ -0
YBX3-216ENST00000544622 A0A087WZG4 1122 aa15.02■□□□□ -0
YBX3-216ENST00000544622 DCAF8L1A6NGE4 600 aa15.02■□□□□ -0
YBX3-216ENST00000544622 NBPF26B4DH59 902 aa15.02■□□□□ -0
YBX3-216ENST00000544622 POLRMTO00411 1230 aaKnown RBP15.02■□□□□ -0
YBX3-216ENST00000544622 CHL1O00533 1208 aa15.02■□□□□ -0
YBX3-216ENST00000544622 NEUROD2Q15784 382 aa15.02■□□□□ -0
YBX3-216ENST00000544622 NBPF10Q6P3W6 841 aaKnown RBP15.02■□□□□ -0
YBX3-216ENST00000544622 NBPF15Q8N660 670 aa15.02■□□□□ -0
YBX3-216ENST00000544622 C10orf71Q711Q0 1435 aa15.01□□□□□ -0.01
YBX3-216ENST00000544622 APAF1O14727 1248 aa15.01□□□□□ -0.01
YBX3-216ENST00000544622 TGFB2P61812 414 aa15.01□□□□□ -0.01
YBX3-216ENST00000544622 NFIXQ14938 502 aa15.01□□□□□ -0.01
YBX3-216ENST00000544622 TSPYL4Q9UJ04 414 aa15.01□□□□□ -0.01
YBX3-216ENST00000544622 PARP3Q9Y6F1 533 aa15.01□□□□□ -0.01
YBX3-216ENST00000544622 KIF13BQ9NQT8 1826 aa15.01□□□□□ -0.01
YBX3-216ENST00000544622 TBC1D2BQ9UPU7 963 aa15□□□□□ -0.01
YBX3-216ENST00000544622 CAMTA2O94983 1202 aa14.99□□□□□ -0.01
YBX3-216ENST00000544622 YBX3P16989 372 aaKnown RBP eCLIP14.99□□□□□ -0.013e-7■■□□□ 12.1
YBX3-216ENST00000544622 PIP4K2AP48426 406 aaPredicted RBP14.99□□□□□ -0.01
YBX3-216ENST00000544622 KIAA1551Q9HCM1 1747 aa14.98□□□□□ -0.01
YBX3-216ENST00000544622 PXDNLA1KZ92 1463 aa14.98□□□□□ -0.01
YBX3-216ENST00000544622 RGL2O15211 777 aa14.98□□□□□ -0.01
YBX3-216ENST00000544622 ZNF853P0CG23 659 aa14.98□□□□□ -0.01
YBX3-216ENST00000544622 KCNA3P22001 575 aa14.98□□□□□ -0.01
YBX3-216ENST00000544622 GPR162Q16538 588 aa14.98□□□□□ -0.01
YBX3-216ENST00000544622 CFAP44Q96MT7 982 aa14.98□□□□□ -0.01
YBX3-216ENST00000544622 NCBP3Q53F19 620 aaKnown RBP14.97□□□□□ -0.01
YBX3-216ENST00000544622 TBC1D9BQ66K14 1250 aa14.97□□□□□ -0.01
YBX3-216ENST00000544622 CLEC4GQ6UXB4 293 aa14.97□□□□□ -0.01
YBX3-216ENST00000544622 LRP10Q7Z4F1 713 aa14.97□□□□□ -0.01
YBX3-216ENST00000544622 DZIP3Q86Y13 1208 aaKnown RBP14.97□□□□□ -0.01
YBX3-216ENST00000544622 MRS2Q9HD23 443 aa14.97□□□□□ -0.01
YBX3-216ENST00000544622 NRXN2Q9P2S2 1712 aa14.97□□□□□ -0.01
YBX3-216ENST00000544622 ZNF330Q9Y3S2 320 aaPredicted RBP14.96□□□□□ -0.01
YBX3-216ENST00000544622 LAMB4A4D0S4 1761 aa14.96□□□□□ -0.02
YBX3-216ENST00000544622 ERBB4Q15303 1308 aa14.95□□□□□ -0.02
YBX3-216ENST00000544622 GRIN3BO60391 1043 aa14.95□□□□□ -0.02
YBX3-216ENST00000544622 SERPINB2P05120 415 aa14.95□□□□□ -0.02
YBX3-216ENST00000544622 PDIA6Q15084 440 aa14.95□□□□□ -0.02
YBX3-216ENST00000544622 SCN7AQ01118 1682 aa14.95□□□□□ -0.02
YBX3-216ENST00000544622 A0A0G2JLW4 131 aa14.94□□□□□ -0.02
YBX3-216ENST00000544622 DPEP1P16444 411 aa14.94□□□□□ -0.02
YBX3-216ENST00000544622 CCDC27Q2M243 656 aa14.94□□□□□ -0.02
YBX3-216ENST00000544622 NPM2Q86SE8 214 aaKnown RBP14.94□□□□□ -0.02
YBX3-216ENST00000544622 YY1P25490 414 aa14.93□□□□□ -0.02
YBX3-216ENST00000544622 KRT24Q2M2I5 525 aa14.93□□□□□ -0.02
YBX3-216ENST00000544622 BCORQ6W2J9 1755 aa14.93□□□□□ -0.02
YBX3-216ENST00000544622 AFDNP55196 1824 aaKnown RBP14.92□□□□□ -0.02
YBX3-216ENST00000544622 ERVV-1B6SEH8 477 aa14.92□□□□□ -0.02
YBX3-216ENST00000544622 HOXB7P09629 217 aa14.92□□□□□ -0.02
YBX3-216ENST00000544622 HLFQ16534 295 aa14.92□□□□□ -0.02
YBX3-216ENST00000544622 BICDL1Q6ZP65 573 aa14.92□□□□□ -0.02
YBX3-216ENST00000544622 SETDB2Q96T68 719 aa14.92□□□□□ -0.02
YBX3-216ENST00000544622 MBIPQ9NS73 344 aa14.92□□□□□ -0.02
YBX3-216ENST00000544622 IFT57Q9NWB7 429 aa14.92□□□□□ -0.02
YBX3-216ENST00000544622 CARMIL3Q8ND23 1372 aa14.92□□□□□ -0.02
YBX3-216ENST00000544622 N4BP2Q86UW6 1770 aaPredicted RBP14.91□□□□□ -0.02
YBX3-216ENST00000544622 PRR5LQ6MZQ0 368 aa14.91□□□□□ -0.02
YBX3-216ENST00000544622 WWC1Q8IX03 1113 aa14.91□□□□□ -0.02
YBX3-216ENST00000544622 PELP1Q8IZL8 1130 aaKnown RBP14.91□□□□□ -0.02
YBX3-216ENST00000544622 LAS1LQ9Y4W2 734 aaKnown RBP14.91□□□□□ -0.02
YBX3-216ENST00000544622 EIF2S2P20042 333 aaKnown RBP14.9□□□□□ -0.02
YBX3-216ENST00000544622 GNAI1P63096 354 aa14.9□□□□□ -0.02
YBX3-216ENST00000544622 CALD1Q05682 793 aaKnown RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms