RNA–Protein interactions for RNA: ENST00000544501.1

YBX3-214, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 181 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-214ENST00000544501 ZNF787Q6DD87 383 aa4.46□□□□□ -1.7
YBX3-214ENST00000544501 B4GALNT3Q6L9W6 998 aa4.46□□□□□ -1.7
YBX3-214ENST00000544501 TIMMDC1Q9NPL8 285 aa4.46□□□□□ -1.7
YBX3-214ENST00000544501 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.46□□□□□ -1.7
YBX3-214ENST00000544501 CABP1Q9NZU7 370 aa4.46□□□□□ -1.7
YBX3-214ENST00000544501 USP3Q9Y6I4 520 aa4.46□□□□□ -1.7
YBX3-214ENST00000544501 SLC35F4A4IF30 521 aa4.45□□□□□ -1.7
YBX3-214ENST00000544501 ATP2B4P23634 1241 aa4.45□□□□□ -1.7
YBX3-214ENST00000544501 NBPF1Q3BBV0 1214 aa4.45□□□□□ -1.7
YBX3-214ENST00000544501 NPAS3Q8IXF0 933 aa4.45□□□□□ -1.7
YBX3-214ENST00000544501 ZDHHC1Q8WTX9 485 aa4.45□□□□□ -1.7
YBX3-214ENST00000544501 L3MBTL2Q969R5 705 aa4.45□□□□□ -1.7
YBX3-214ENST00000544501 COL26A1Q96A83 441 aa4.45□□□□□ -1.7
YBX3-214ENST00000544501 C2orf49Q9BVC5 232 aaPredicted RBP4.45□□□□□ -1.7
YBX3-214ENST00000544501 TRAIPQ9BWF2 469 aa4.45□□□□□ -1.7
YBX3-214ENST00000544501 ZDHHC3Q9NYG2 299 aa4.45□□□□□ -1.7
YBX3-214ENST00000544501 CXXC1Q9P0U4 656 aaPredicted RBP4.45□□□□□ -1.7
YBX3-214ENST00000544501 GPC6Q9Y625 555 aaPredicted RBP4.45□□□□□ -1.7
YBX3-214ENST00000544501 SENP3-EIF4A1A0A087X0R7 540 aa4.44□□□□□ -1.7
YBX3-214ENST00000544501 SOBPA7XYQ1 873 aa4.44□□□□□ -1.7
YBX3-214ENST00000544501 EML1O00423 815 aa4.44□□□□□ -1.7
YBX3-214ENST00000544501 PRMT3O60678 531 aa4.44□□□□□ -1.7
YBX3-214ENST00000544501 PTCD1O75127 700 aaKnown RBP4.44□□□□□ -1.7
YBX3-214ENST00000544501 F11P03951 625 aa4.44□□□□□ -1.7
YBX3-214ENST00000544501 RHOQP17081 205 aa4.44□□□□□ -1.7
YBX3-214ENST00000544501 SSFA2P28290 1259 aa4.44□□□□□ -1.7
YBX3-214ENST00000544501 PLA2G4AP47712 749 aa4.44□□□□□ -1.7
YBX3-214ENST00000544501 TBCELQ5QJ74 424 aa4.44□□□□□ -1.7
YBX3-214ENST00000544501 C1orf53Q5VUE5 145 aa4.44□□□□□ -1.7
YBX3-214ENST00000544501 GMCL1Q96IK5 515 aa4.44□□□□□ -1.7
YBX3-214ENST00000544501 PRIMPOLQ96LW4 560 aa4.44□□□□□ -1.7
YBX3-214ENST00000544501 SLAIN2Q9P270 581 aa4.44□□□□□ -1.7
YBX3-214ENST00000544501 ZNF232Q9UNY5 417 aa4.44□□□□□ -1.7
YBX3-214ENST00000544501 TATP17735 454 aaPredicted RBP4.43□□□□□ -1.7
YBX3-214ENST00000544501 MSX1P28360 303 aa4.43□□□□□ -1.7
YBX3-214ENST00000544501 PHKA2P46019 1235 aa4.43□□□□□ -1.7
YBX3-214ENST00000544501 LBRQ14739 615 aaKnown RBP4.43□□□□□ -1.7
YBX3-214ENST00000544501 HOMEZQ8IX15 550 aa4.43□□□□□ -1.7
YBX3-214ENST00000544501 CCDC155Q8N6L0 562 aa4.43□□□□□ -1.7
YBX3-214ENST00000544501 CHMP7Q8WUX9 453 aaPredicted RBP4.43□□□□□ -1.7
YBX3-214ENST00000544501 VTI1AQ96AJ9 217 aa4.43□□□□□ -1.7
YBX3-214ENST00000544501 AIDAQ96BJ3 306 aa4.43□□□□□ -1.7
YBX3-214ENST00000544501 NXF1Q9UBU9 619 aaKnown RBP4.43□□□□□ -1.7
YBX3-214ENST00000544501 H7C1W4 665 aa4.42□□□□□ -1.7
YBX3-214ENST00000544501 LGR5O75473 907 aa4.42□□□□□ -1.7
YBX3-214ENST00000544501 BRD1O95696 1058 aa4.42□□□□□ -1.7
YBX3-214ENST00000544501 PDIA4P13667 645 aaKnown RBP4.42□□□□□ -1.7
YBX3-214ENST00000544501 FKBP5Q13451 457 aaPredicted RBP4.42□□□□□ -1.7
YBX3-214ENST00000544501 PHLDB3Q6NSJ2 640 aa4.42□□□□□ -1.7
YBX3-214ENST00000544501 PGBD3Q8N328 593 aa4.42□□□□□ -1.7
YBX3-214ENST00000544501 C7orf43Q8WVR3 580 aa4.42□□□□□ -1.7
YBX3-214ENST00000544501 CRISPLD1Q9H336 500 aa4.42□□□□□ -1.7
YBX3-214ENST00000544501 MTMR7Q9Y216 660 aa4.42□□□□□ -1.7
YBX3-214ENST00000544501 PARP3Q9Y6F1 533 aa4.42□□□□□ -1.7
YBX3-214ENST00000544501 CARNS1A5YM72 827 aa4.41□□□□□ -1.7
YBX3-214ENST00000544501 PPFIA3O75145 1194 aa4.41□□□□□ -1.7
YBX3-214ENST00000544501 ATP4AP20648 1035 aa4.41□□□□□ -1.7
YBX3-214ENST00000544501 ITGA6P23229 1130 aa4.41□□□□□ -1.7
YBX3-214ENST00000544501 TXLNAP40222 546 aa4.41□□□□□ -1.7
YBX3-214ENST00000544501 HIF1AQ16665 826 aa4.41□□□□□ -1.7
YBX3-214ENST00000544501 RTN1Q16799 776 aa4.41□□□□□ -1.7
YBX3-214ENST00000544501 NLRP8Q86W28 1048 aa4.41□□□□□ -1.7
YBX3-214ENST00000544501 TRIM22Q8IYM9 498 aa4.41□□□□□ -1.7
YBX3-214ENST00000544501 ALDH16A1Q8IZ83 802 aa4.41□□□□□ -1.7
YBX3-214ENST00000544501 NANOS1Q8WY41 292 aaKnown RBP4.41□□□□□ -1.7
YBX3-214ENST00000544501 MYO19Q96H55 970 aa4.41□□□□□ -1.7
YBX3-214ENST00000544501 GAS2L1Q99501 681 aaPredicted RBP4.41□□□□□ -1.7
YBX3-214ENST00000544501 PHACTR1Q9C0D0 580 aa4.41□□□□□ -1.7
YBX3-214ENST00000544501 HCN4Q9Y3Q4 1203 aa4.41□□□□□ -1.7
YBX3-214ENST00000544501 PATL2C9JE40 543 aaKnown RBP4.4□□□□□ -1.71
YBX3-214ENST00000544501 ARID4AP29374 1257 aaPredicted RBP4.4□□□□□ -1.71
YBX3-214ENST00000544501 ARSJQ5FYB0 599 aaPredicted RBP4.4□□□□□ -1.71
YBX3-214ENST00000544501 EFHC2Q5JST6 749 aa4.4□□□□□ -1.71
YBX3-214ENST00000544501 SH3PXD2AQ5TCZ1 1133 aa4.4□□□□□ -1.71
YBX3-214ENST00000544501 QTRT2Q9H974 415 aaKnown RBP4.4□□□□□ -1.71
YBX3-214ENST00000544501 ANKIB1Q9P2G1 1089 aa4.4□□□□□ -1.71
YBX3-214ENST00000544501 A0A1W2PNR3 127 aa4.39□□□□□ -1.71
YBX3-214ENST00000544501 H3BM21 787 aa4.39□□□□□ -1.71
YBX3-214ENST00000544501 TERTO14746 1132 aaKnown RBP4.39□□□□□ -1.71
YBX3-214ENST00000544501 KCNA1Q09470 495 aa4.39□□□□□ -1.71
YBX3-214ENST00000544501 DBN1Q16643 649 aa4.39□□□□□ -1.71
YBX3-214ENST00000544501 SAMD5Q5TGI4 173 aa4.39□□□□□ -1.71
YBX3-214ENST00000544501 C16orf46Q6P387 395 aa4.39□□□□□ -1.71
YBX3-214ENST00000544501 FIGNL1Q6PIW4 674 aa4.39□□□□□ -1.71
YBX3-214ENST00000544501 BICDL1Q6ZP65 573 aa4.39□□□□□ -1.71
YBX3-214ENST00000544501 RIPOR1Q6ZS17 1223 aa4.39□□□□□ -1.71
YBX3-214ENST00000544501 RHPN1Q8TCX5 695 aa4.39□□□□□ -1.71
YBX3-214ENST00000544501 ZIC5Q96T25 663 aa4.39□□□□□ -1.71
YBX3-214ENST00000544501 NUCKS1Q9H1E3 243 aaKnown RBP4.39□□□□□ -1.71
YBX3-214ENST00000544501 NEUROD4Q9HD90 331 aa4.39□□□□□ -1.71
YBX3-214ENST00000544501 VSIG8P0DPA2 414 aa4.38□□□□□ -1.71
YBX3-214ENST00000544501 C11orf91Q3C1V1 193 aa4.38□□□□□ -1.71
YBX3-214ENST00000544501 COX20Q5RI15 118 aa4.38□□□□□ -1.71
YBX3-214ENST00000544501 IER5Q5VY09 327 aa4.38□□□□□ -1.71
YBX3-214ENST00000544501 FOXR1Q6PIV2 292 aa4.38□□□□□ -1.71
YBX3-214ENST00000544501 SV2AQ7L0J3 742 aa4.38□□□□□ -1.71
YBX3-214ENST00000544501 KCTD17Q8N5Z5 321 aa4.38□□□□□ -1.71
YBX3-214ENST00000544501 CCER1Q8TC90 406 aaPredicted RBP4.38□□□□□ -1.71
YBX3-214ENST00000544501 SLC16A10Q8TF71 515 aa4.38□□□□□ -1.71
YBX3-214ENST00000544501 NGLY1Q96IV0 654 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms